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Modernize CXGN::Search::CannedForms::MarkerSearch
2011-06-01
Jonathan "Duk
e
"
.
.
.
Moderniz
e
CXGN
:
:
S
earch::CannedForms::MarkerSearch
commit
|
commitdiff
|
tree
2011-06-01
Jonath
a
n "Du
k
e
"
.
.
.
Get rid of som
e
d
eps
that wil
l
go away soon
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Mo
d
ern
i
ze Can
n
edForms an
d
don
'
t use GlobalContext in
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
J
o
n
athan "Duke"
.
.
.
fol
l
ow rbuels
+
+ advi
c
e
a
n
d
do a
3
01
r
edirect
at the
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
J
onat
h
an "Duk
e
"
.
.
.
Add
t
he
l
e
gacy p
a
th of
dire
c
t_se
a
rch to the new control
l
er
commit
|
commitdiff
|
tree
2011-06-01
Jonathan
"
Duke"
.
.
.
M
e
rge
remote-
t
rac
k
ing branch 'o
r
igin/to
p
ic/organism_search
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonathan
"
Duke"
.
.
.
Add a skel
e
ton direc
t
s
earc
h
catalyst controller
commit
|
commitdiff
|
tree
2011-05-25
Jona
t
han "D
u
ke"
.
.
.
Merge branc
h
'topic/
s
ecretom'
commit
|
commitdiff
|
tree
2011-05-25
J
onathan
"Duke"
.
.
.
Merge
b
ra
n
ch 'master' into t
o
pic/secretom
commit
|
commitdiff
|
tree
2011-05-11
Jonathan "Duke"
.
.
.
Conv
e
r
t
ajax
o
rganism
controller integra
t
ion tests
.
.
.
commit
|
commitdiff
|
tree
2011-05-11
Jonat
h
an "Duke"
.
.
.
Move an
e
x
amp
l
e selen
i
um t
e
st to the prop
e
r hom
e
commit
|
commitdiff
|
tree
2011-05-06
Jona
t
han "Duke"
.
.
.
Make more c
v
term ajax
integration tests fail mor
e
g
r
acefu
l
ly
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke"
.
.
.
Make
cvte
r
m aja
x
integration tests fail more g
r
acefully
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
J
onathan "
D
uke"
.
.
.
Re
v
ert "fix test_all
.
p
l
hang
i
n
g
if ser
v
er fails
to
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonat
h
an
"
Duke"
.
.
.
Revert "cl
e
an up ser
v
er pr
o
cess if i
t
dies"
commit
|
commitdiff
|
tree
2011-05-06
Jonat
h
an
"
D
uke"
.
.
.
perltidy b
i
os
o
urce
v
al
i
dati
o
n
t
e
sts
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "D
u
ke"
.
.
.
Don't use SGN_TEST
_
SER
V
ER in
t
he biosource
validation
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonath
a
n "
D
uke
"
.
.
.
Modernize the blast inde
x
.
p
l
commit
|
commitdiff
|
tree
2011-05-05
Jonath
a
n "Duk
e
"
.
.
.
Add some useful w
a
rnings to t/test_all
.
p
l
to
d
ebug
.
.
.
commit
|
commitdiff
|
tree
2011-05-05
J
onathan "Duke"
.
.
.
Squas
h
a war
n
i
ng in th
e
C
v
i
e
w controlle
r
commit
|
commitdiff
|
tree
2011-05-05
Jonath
a
n
"Du
k
e"
.
.
.
Squash a
w
a
rning
commit
|
commitdiff
|
tree
2011-05-04
Jonathan
"
Duke"
.
.
.
Crush some warnings
commit
|
commitdiff
|
tree
2011-05-04
J
o
n
a
than "Duke"
.
.
.
Squash
warnings
commit
|
commitdiff
|
tree
2011-05-04
Jonathan
"Duke"
.
.
.
Make
alig
n
_vi
e
we
r
.
t
tests
u
s
e
SGN::Test::
W
WW::Mecha
n
i
z
e
commit
|
commitdiff
|
tree
2011-05-04
Jona
t
ha
n
"Duke"
.
.
.
Make
SGN:
:
Test::Data qu
i
eter by d
e
fault
commit
|
commitdiff
|
tree
2011-05-03
Jonathan
"
Duke"
.
.
.
Fix
C
ontent-di
s
position t
e
st for SGN::Con
t
roller
:
:Downloa
d
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "Duke"
.
.
.
f
i
x
typ
o
i
n
sg
n
.
conf
commit
|
commitdiff
|
tree
2011-05-03
Jo
n
athan "Duke"
.
.
.
Groom for
m
a
t
t
i
ng
h
e
lp
e
rs
.
t a bit
commit
|
commitdiff
|
tree
2011-05-03
Jonathan
"Duk
e
"
.
.
.
Preve
n
t some u
n
initialized value warning
s
commit
|
commitdiff
|
tree
2011-04-26
J
on
a
than "Duke"
.
.
.
Make t/01app
.
t use T
e
st::Most
(
trigger jitterbug)
commit
|
commitdiff
|
tree
2011-04-26
Jona
t
han "
D
uke"
.
.
.
Tidy up a script to tempt
t
he Jitterbu
g
gods
commit
|
commitdiff
|
tree
2011-04-26
J
o
n
at
h
an "Duke"
.
.
.
Yet another trivial change to trigg
e
r Jitterbug
commit
|
commitdiff
|
tree
2011-04-26
Jonathan
"Duke"
.
.
.
Ignore a f
i
le whi
c
h i
s
g
en
e
rated by newer Module::B
u
ild's
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duk
e
"
.
.
.
T
r
ivial change t
o
Build
.
PL to
t
rigger jitterbug
commit
|
commitdiff
|
tree
2011-04-26
Jo
n
athan "Du
k
e"
.
.
.
Merge branch 'master'
i
nto topi
c
/se
c
retom
commit
|
commitdiff
|
tree
2011-04-22
J
o
nat
h
an "Duke"
.
.
.
Remove the mini
f
i
e
d
c
o
l
orbox and reset colorbox
.
js
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "D
u
k
e
"
.
.
.
Pro
p
erl
y
squash re
d
e
finition w
a
rning
s
commit
|
commitdiff
|
tree
2011-04-21
Jonathan "D
u
k
e"
.
.
.
Warn
i
ng squash in
i
nfo_s
e
ction
.
m
a
s
commit
|
commitdiff
|
tree
2011-04-15
Jonathan "Duke"
.
.
.
M
erge branch 'topic/tmpredpl'
commit
|
commitdiff
|
tree
2011-03-24
J
o
nath
a
n "Duke"
.
.
.
Merge r
e
mot
e
-
t
racking bra
n
ch
'
origin/topi
c
/stock_search'
commit
|
commitdiff
|
tree
2011-03-24
Jonatha
n
"Duke"
.
.
.
Me
r
ge remo
t
e-tracking branch 'ori
g
in/topi
c
/
s
tock_sear
c
h
.
.
.
commit
|
commitdiff
|
tree
2011-03-24
Jonathan "Duke"
.
.
.
Use un
m
inified the jquery, because it will be minified
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
J
o
n
athan "Duk
e
"
.
.
.
R
emove a useless use of catfi
l
e
,
rbuels++
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
M
ake stock search
work
p
roperly from direct_search
.
pl
commit
|
commitdiff
|
tree
2011-03-23
Jonathan
"
Duke"
.
.
.
M
e
rge remote-trackin
g
branch 'orig
i
n/topic/stock
_
search
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonath
a
n "Duke"
.
.
.
Store the stock s
e
arch form in an external YAML
f
i
le
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "
D
uke"
.
.
.
conta
i
ner_at
t
ributes i
s
n
o
t a
va
l
id FormFu att
r
i
b
ute
.
.
.
commit
|
commitdiff
|
tree
2011-03-23
Jonathan "Duke"
.
.
.
Mer
g
e
remote
-
t
r
acking bran
c
h 'origin/
t
o
pic/stock
_
search
.
.
.
commit
|
commitdiff
|
tree
2011-03-22
Jonathan "Duk
e
"
.
.
.
wip
commit
|
commitdiff
|
tree
2011-03-17
Jona
t
han "D
u
ke"
.
.
.
Add a s
t
ub f
o
r updat
i
ng t
h
e trait ra
n
ge when t
h
e tra
i
t
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
Jonath
a
n
"
Duke
"
.
.
.
Add a div
that can b
e
populated w
i
th the val
i
d
trait
.
.
.
commit
|
commitdiff
|
tree
2011-03-16
J
o
n
athan "
D
uk
e
"
.
.
.
Fix stock search
p
agination links
a
nd
r
e
f
actor c
o
n
troller
commit
|
commitdiff
|
tree
2011-03-16
Jonat
h
an
"
D
uke"
.
.
.
Refactor sto
c
k controller
.
No functional changes
commit
|
commitdiff
|
tree
2011-03-15
Jonat
h
an
"Duke"
.
.
.
S
h
o
w the advanced option
s
in stock search result
s
if
.
.
.
commit
|
commitdiff
|
tree
2011-03-14
Jona
t
han "Duke"
.
.
.
Upd
a
te
t
he
'
About SGN' blurb to be
m
o
re inclusive to
.
.
.
commit
|
commitdiff
|
tree
2011-03-15
Jonathan
"
Duke
"
.
.
.
Fix syntax error in o
r
ganism controller test
commit
|
commitdiff
|
tree
2011-03-11
Jonathan "Duke"
.
.
.
M
ake the advanced checkbox on stock
s
ea
r
ch fina
l
ly
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
J
o
n
a
than "D
u
ke"
.
.
.
U
s
e t
h
e
bare
l
y-do
c
umente
d
container_attribute
s
in FormFu
commit
|
commitdiff
|
tree
2011-03-10
Jona
t
han
"Duke
"
.
.
.
Te
l
l FormF
u
to add
C
SS classe
s
to
c
e
rtain adva
n
ced
.
.
.
commit
|
commitdiff
|
tree
2011-02-28
Jonathan "
D
uke"
.
.
.
perltidy on assing_owne
r
.
pl
commit
|
commitdiff
|
tree
2011-02-28
Jonathan "Duke"
.
.
.
Clean up cr
u
ft
i
n assign_ow
n
er
.
p
l
commit
|
commitdiff
|
tree
2011-02-04
J
on
a
than "
D
uke"
.
.
.
Moderniz
e
and
uncruftify
t
he c
v
iew
index
.
mas
a
b
it
commit
|
commitdiff
|
tree
2011-02-04
Jona
t
han
"
D
u
ke
"
.
.
.
Add some klingon sensibility to
Secretom code and clean
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
J
o
na
t
han
"Duke
"
.
.
.
Rem
o
ve
c
ruft from
c
vi
e
w index
.
pl
commit
|
commitdiff
|
tree
2011-02-04
Jonathan
"
Duke"
.
.
.
Ref
a
ctor
O
r
ganism controller t
e
s
ts a bit
commit
|
commitdiff
|
tree
2011-02-04
Jonatha
n
"
Du
k
e
"
.
.
.
Properly skip ITAG re
l
e
a
se te
s
ts when required data
.
.
.
commit
|
commitdiff
|
tree
2011-02-04
Jonathan "Duke"
.
.
.
Add
t/data to
.
gi
t
i
g
nore
commit
|
commitdiff
|
tree
2011-02-04
Jonat
h
a
n
"Duke"
.
.
.
P
roperly
w
arn the
exit
c
ode i
f
s
o
me
t
hing
fai
l
s
i
n SGN
.
.
.
commit
|
commitdiff
|
tree
2011-02-03
Jonathan "Duke"
.
.
.
Perlt
i
dy on t/phe
n
ome
/
qtl
.
t
commit
|
commitdiff
|
tree
2011-02-01
Jonat
h
an "Duke"
.
.
.
Conv
e
rt bulk te
s
t
s
to use SGN
:
:
Test::WWW::
M
e
chanize
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Make SGN::B
u
ild report
b
etter errors w
h
en checking
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke
"
.
.
.
Move
S
GN::View::Email::ErrorEmai
l
tes
t
s to a
nice
r
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonathan "Duke"
.
.
.
Skip some QTL te
s
t
s
if the heat
m
ap is not
p
r
es
e
nt,
.
.
.
commit
|
commitdiff
|
tree
2011-02-01
Jonatha
n
"Du
k
e
"
.
.
.
M
ake SGN::View::St
o
ck generat
e
c
v
term links from cvterm
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
J
o
nathan
"Duke"
.
.
.
Skip some tests if member_search_for
m
is not a
v
ailab
l
e
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "D
u
ke"
.
.
.
Add
s
ome diagno
s
itc
s
and
a t
e
st fo
r
SGN::Contr
o
ller
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duk
e
"
.
.
.
Skip some genomic clone test
s
i
f
the rel
e
vant form
.
.
.
commit
|
commitdiff
|
tree
2011-01-31
Jonatha
n
"Duke
"
.
.
.
G
i
ve Bio::S
e
creTary::TMpred mode
r
n kl
i
n
g
o
n
-l
i
ke powers
commit
|
commitdiff
|
tree
2011-01-31
J
onathan "
D
uke"
.
.
.
P
e
rltidy on Bio::
S
ec
r
eTa
r
y::TM
p
red
commit
|
commitdiff
|
tree
2011-01-31
Jonathan "Duke
"
.
.
.
Cache th
e
db when looking up feature_cvterms
a
nd p
r
event
.
.
.
commit
|
commitdiff
|
tree
2011-01-28
Jonatha
n
"Duk
e
"
.
.
.
update
.
gitignore
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Du
k
e"
.
.
.
Move SGN::
V
iew::Email tests
commit
|
commitdiff
|
tree
2011-01-28
Jonathan "Du
k
e"
.
.
.
Prettify SGN::C
o
ntr
o
lle
r
::Stock
commit
|
commitdiff
|
tree
2011-01-28
Jonat
h
an
"
Duke"
.
.
.
M
ake some t
r
i
v
ial cha
n
ges to trigg
e
r
jitterbug
commit
|
commitdiff
|
tree
2011-01-26
J
o
nathan "Duke"
.
.
.
Merge branc
h
'topic/co
n
tact'
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "Duke"
.
.
.
Get user
e
mail correctly
commit
|
commitdiff
|
tree
2011-01-26
Jonathan "D
u
k
e
"
.
.
.
Modernize the Contact C
o
ntroll
e
r
commit
|
commitdiff
|
tree
2011-01-26
Jon
a
than "Duke"
.
.
.
Perltidy on loc
u
s
_
display
.
pl
commit
|
commitdiff
|
tree
2011-01-26
J
onathan "Duk
e
"
.
.
.
Refactor some SGN:
:
Authentication
:
:* code
commit
|
commitdiff
|
tree
2011-01-24
J
onathan "Duke"
.
.
.
U
s
e
S
GN::View::Email in
s
tead
of
t
he deprecated
CXG
N
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
J
o
n
athan "Duke"
.
.
.
Remove /tools/c
o
ntact
.
pl an
d
all refere
n
ces
t
o i
t
,
.
.
.
commit
|
commitdiff
|
tree
2011-01-22
J
o
n
atha
n
"
Duke"
.
.
.
Modernize cosii_submission
commit
|
commitdiff
|
tree
2011-01-22
Jonathan "Duke"
.
.
.
perlt
i
dy on t/in
t
egration/contac
t
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jona
t
han
"Duke"
.
.
.
Perl
t
i
d
y t/cvi
e
w/ma
p
.
t
commit
|
commitdiff
|
tree
2011-01-20
Jonathan "Duke"
.
.
.
Fix
S
GN:
:
Build::Changelog te
s
t
s
commit
|
commitdiff
|
tree
2011-01-20
Jon
a
than "Duke"
.
.
.
Fix sequ
e
nce
A
PI
tests
commit
|
commitdiff
|
tree
2011-01-13
J
onathan "Duke"
.
.
.
Fix error count and remove some commented-
o
ut code
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tree
2010-12-09
Jonathan
"
D
u
ke"
.
.
.
I
g
nore some temp data
f
i
les
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2010-12-07
Jon
a
than
"
Duke"
.
.
.
Add a tr
a
it_lis
t
.
pl validation test
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2010-12-07
Jon
a
than
"Duke"
.
.
.
A
dd some more QTL search validatio
n
te
s
ts
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