Public Git Hosting - sgn.git/search

2011-11-18	Jonathan "Duke"...	Update SGN::Test::WWW::Mechanize to add a diagnostic...	commit \| commitdiff \| tree
2011-11-18	Jonathan "Duke"...	Tidy phenome validation tests	commit \| commitdiff \| tree
2011-11-04	Jonathan "Duke"...	Todo some marker validation tests that link to gbrowse...	commit \| commitdiff \| tree
2011-11-04	Jonathan "Duke"...	Make more tests skip properly if necessary	commit \| commitdiff \| tree
2011-11-04	Jonathan "Duke"...	Skip some insilicopcr tests when qsub is not configured	commit \| commitdiff \| tree
2011-11-04	Jonathan "Duke"...	perltidy	commit \| commitdiff \| tree
2011-11-04	Jonathan "Duke"...	Skip some QTL controller tests if qsub is not configured...	commit \| commitdiff \| tree
2011-11-02	Jonathan "Duke"...	Use aliased.pm instead of constant.pm in CXGN/Transcript...	commit \| commitdiff \| tree
2011-11-02	Jonathan "Duke"...	Modernize t/SGN/Controller/Clone_Genomic.t	commit \| commitdiff \| tree
2011-10-28	Jonathan "Duke"...	Make the qtl_analysis tests fail more gracefully	commit \| commitdiff \| tree
2011-10-11	Jonathan "Duke"...	Speed up bulk gene downloader and narrow down where...	commit \| commitdiff \| tree
2011-10-10	Jonathan "Duke"...	Add more bulk gene tests	commit \| commitdiff \| tree
2011-10-10	Jonathan "Duke"...	Add some defensive error checking in the bulk controller...	commit \| commitdiff \| tree
2011-10-05	Jonathan "Duke"...	Make it so only a single sql query is needed regardless...	commit \| commitdiff \| tree
2011-10-05	Jonathan "Duke"...	Make conversion to bioperl objects a different catatlyst...	commit \| commitdiff \| tree
2011-10-05	Jonathan "Duke"...	Make the actual freezing of sequences another catalyst...	commit \| commitdiff \| tree
2011-10-05	Jonathan "Duke"...	Refactor more of the bulk gene controller into smaller...	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Refactor some bulk gene code into smaller catalyst...	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Force a plaintext description in a slightly hacky way...	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Get extremely close to making the last failing test...	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Correct the CDS FASTA id line description	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Make the cds test pass	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Add a failing test for a cds gene	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Fix a subtle logic bug and add more bulk gene tests...	commit \| commitdiff \| tree
2011-10-04	Jonathan "Duke"...	Add more detail to the bulk gene test names	commit \| commitdiff \| tree
2011-09-28	Jonathan "Duke"...	Add another bulk gene test	commit \| commitdiff \| tree
2011-09-28	Jonathan "Duke"...	Fix some logic bugs in the bulk gene download, down...	commit \| commitdiff \| tree
2011-09-28	Jonathan "Duke"...	Correct bulk gene tests to use an actually gene identifier	commit \| commitdiff \| tree
2011-09-28	Jonathan "Duke"...	Make bulk gene tests less noisy and closer to passing	commit \| commitdiff \| tree
2011-09-28	Jonathan "Duke"...	Clean up some warnings in the bulk controller and set...	commit \| commitdiff \| tree
2011-09-27	Jonathan "Duke"...	Generate the js menu correctly for the bulk gene downloader	commit \| commitdiff \| tree
2011-09-27	Jonathan "Duke"...	Revert "Merge remote branch 'origin/topic/github_news'"	commit \| commitdiff \| tree
2011-09-27	Jonathan "Duke"...	Add some CDS bulk gene tests	commit \| commitdiff \| tree
2011-09-27	Jonathan "Duke"...	Add a very basic test of mrna_cds_protein_sequence	commit \| commitdiff \| tree
2011-09-27	Jonathan "Duke"...	Convert mrna_and_protein_sequence to mrna_cds_protein_sequen...	commit \| commitdiff \| tree
2011-09-26	Jonathan "Duke"...	Depend on XML::Atom instead of XML::Atom::Feed and...	commit \| commitdiff \| tree
2011-09-26	Jonathan "Duke"...	Add a dep for a recent version of DateTime::TimeZone	commit \| commitdiff \| tree
2011-09-26	Jonathan "Duke"...	Merge remote branch 'origin/topic/github_news'	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add some tests for requests containing invalid gene ids	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Downgrade BCS::Sequence::Feature objects to bioperl...	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Get the protein data test passing, and make cache key...	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add a failing test for downloading gene protein data	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add tests for downloading protein data for a gene	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Verify the bulk gene download datatype is reasonable...	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add a test that verifies that a data type was submitted	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add a test to verify the correct cDNA sequence is returned	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	correct the gene identifier example	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Give features and genes their own caches and return...	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Add a failing test that checks for non-zero length...	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Freeze and thaw seqs in our cache and add more tests	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Get the current bulk gene tests passing	commit \| commitdiff \| tree
2011-09-23	Jonathan "Duke"...	Start using the very useful mrna_and_protein_sequence...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Attempt to get closer to actually grabbing useful sequence...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Make the bulk gene example id fit in the box	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Add an example gene identifier to the bulk gene mason...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Teach the bulk gene controller about file uploads,...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Merge remote branch 'origin/topic/bulk_gene' into topic...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Add a bulk gene download mason component	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Add tags to .gitignore	commit \| commitdiff \| tree
2011-09-21	Jonathan "Duke"...	Fix the bulk feature tests after rbuels-- broke them	commit \| commitdiff \| tree
2011-09-20	Jonathan "Duke"...	Link to the solgenomics github news correctly and render...	commit \| commitdiff \| tree
2011-09-20	Jonathan "Duke"...	Link to github news activity from main page instead...	commit \| commitdiff \| tree
2011-09-20	Jonathan "Duke"...	Revert "Revert "fixed typo a dep (XML::Atom::Feed)""	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a link to the solgenomics twitter account on our...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a gene tab to the bulk menu	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Start implementing bulk gene downloads	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Merge remote branch 'origin/topic/bulk_download'	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Make the bulk feature download work correctly with...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add more bulk feature tests	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Tweak the sequence API	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a test for the current behavior of throwing a 404...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a failing test; Currently, if any identifiers are...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Fix bug where leading/trailing whitespace in identifier...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Fix caching logic, cache seq ids and add failing test	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Always append newline between form input and upload...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Add tests for appending file uploads to form input	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Refactor a function out of an inner scope	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Provide txt and fasta links and add tests	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Fix a subtle bug where our sha1 did not take into account...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Refactor menu code into a catalyst action and render...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	These are actually integration tests	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Implement file upload feature, which appends the contents...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Remove radio boxes from bulk feature mason component...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Get the feature js menu bar on the bulk feature page	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix bulk feature ui so that feature_type is a radio...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix bug and add test for case when nothing is submitted	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Give real examples in the bulk feature mason component	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Use freeze+thaw instead of get+set; This makes the...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Add bulk controller test	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Add more bulk controller tests	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Attempt to test for cache directory removal bug in...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Extend Catalyst::Controller earlier	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Remove some unnecessary code from the bulk controller	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Correct some bulk feature tests and tweak some settings	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix stringification and sequence identifier bugs in...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix a bulk test so that it correctly verifies no wrong...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Closer to a working prototype...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Don't use a lockfile for now, get closer to a basic...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Fix lockfile issue and improve tests for bulk feature...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Improve tests	commit \| commitdiff \| tree
next

Sol Genomics Network

RSS Atom