repo.or.cz
/
sgn.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
use CXGN::Blast object instead of outdated CXGN::BlastDb object.
2018-11-02
Lukas Mueller
use
C
X
GN::Bl
a
st object
i
n
stead o
f
outdated CXGN:
:
BlastDb
.
.
.
commit
|
commitdiff
|
tree
2018-11-02
Luk
a
s Mueller
read jbrowse_src
from db
commit
|
commitdiff
|
tree
2018-11-02
L
ukas Mueller
a
d
d jbrowse_s
r
c c
o
lumn t
o
Blast object
.
commit
|
commitdiff
|
tree
2018-11-02
Lukas Mueller
Merge pu
l
l re
q
uest #2251
fro
m
solgenomics/topic
/
Upd
a
teMusaStock
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mueller
rename_stocks
.
p
l operatio
n
s
s
hould be d
o
ne on
u
n
iquename
.
.
.
commit
|
commitdiff
|
tree
2018-11-01
Luk
a
s
Muell
e
r
co
n
t
i
nue if a stock
is
not found
.
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mueller
r
emove un
n
eed
e
d
o
pti
o
n -c
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mueller
report if a s
t
ock is n
o
t
found
.
commit
|
commitdiff
|
tree
2018-11-01
Luk
a
s M
u
eller
modi
f
y rename_stocks
.
pl to rename stock uniquename
s
.
.
.
commit
|
commitdiff
|
tree
2018-10-20
L
u
kas Muell
e
r
Merge pull req
u
est #2234 from sol
g
enomi
c
s/topic/g
w
as_web
commit
|
commitdiff
|
tree
2018-10-12
Lukas Muel
l
er
fix undefin
e
d
v
alue
w
arnings in File
.
pm
commit
|
commitdiff
|
tree
2018-10-04
Lukas M
u
e
l
ler
remove stderr messa
g
es
.
commit
|
commitdiff
|
tree
2018-10-04
Luk
a
s Mueller
fix automatic
p
assword fi
e
ld data entry
b
y clicking
.
.
.
commit
|
commitdiff
|
tree
2018-09-12
Luk
a
s
Mueller
ignore emacs backup f
i
les also
in
d
b/run_all_patches
.
pl
commit
|
commitdiff
|
tree
2018-09-12
Lukas Mueller
ignore dbpatches that are emacs ba
c
k
u
p
file
s
.
commit
|
commitdiff
|
tree
2018-09-12
L
u
k
as M
u
e
ller
use postgre
s
password
from config file for runnin
g
.
.
.
commit
|
commitdiff
|
tree
2018-08-08
Lukas M
u
eller
db patch for i
m
age display order
.
commit
|
commitdiff
|
tree
2018-08-08
L
u
ka
s
M
u
el
l
er
m
a
ke the order of
images editable on detail
p
age
s
.
commit
|
commitdiff
|
tree
2018-07-22
Luka
s
Mueller
fi
x
URL form quick_cr
e
ate_user
.
commit
|
commitdiff
|
tree
2018-07-22
L
u
k
as Mu
e
ller
move
t
he q
u
ick cr
e
ate
u
s
er function from
c
gi to MVC
.
commit
|
commitdiff
|
tree
2018-07-02
Lukas
M
u
e
ller
report co
u
nt of dele
t
ed
imag
e
s
.
commit
|
commitdiff
|
tree
2018-07-02
Lukas Mueller
a sc
r
i
p
t
to delete
images
.
commit
|
commitdiff
|
tree
2018-06-26
L
ukas Mueller
fix typo in location upload form descr
i
ption
.
commit
|
commitdiff
|
tree
2018-06-06
Lukas Mueller
Merge pull req
u
e
st #1928 fro
m
solgenomics/top
i
c/ph
e
notype_
t
a
.
.
.
commit
|
commitdiff
|
tree
2018-06-06
Lu
k
a
s
Muell
e
r
Make Sl
u
rm the d
e
fault ba
c
kend by adding it to sgn
.
.
.
commit
|
commitdiff
|
tree
2018-05-31
Lukas
M
u
e
ller
run al
i
gnme
n
t job loc
a
lly
instead of on the cluster
.
.
.
commit
|
commitdiff
|
tree
2018-05-28
Lukas
M
ue
l
ler
Merge pull re
q
uest #1902 from so
l
genomi
c
s/t
o
pic/bra
p
i_1
.
1
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
f
ix password re
s
et link
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
Remov
e
protocol from link, as it should
b
e al
r
eady
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas
Mueller
fix hostname i
n
email link
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muel
l
er
fix
commen
t
ed out code
.
commit
|
commitdiff
|
tree
2018-05-26
L
u
kas M
u
eller
tweak cookie popup
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
remov
e
in
c
lu
d
e intend
e
d for
ot
h
e
r
bra
n
ch
f
or now
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mue
l
ler
Move commo
n
footer
element
i
nc
l
ude
i
n
t
o the parent
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Luka
s
M
u
elle
r
T
wea
k
redir
e
c
t
after login page
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muelle
r
delete old cgi-bin login sc
r
ipts
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas
M
ueller
r
e
move
d
uplicated cod
e
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mue
l
ler
mo
v
e
pr
e
ven
t
De
f
ault()
to
b
eginn
i
ng
of
functio
n
.
commit
|
commitdiff
|
tree
2018-05-26
L
u
kas Mueller
r
emove
d
e
bu
g
gin
pa
s
s
w
o
rd loggin
g
.
commit
|
commitdiff
|
tree
2018-05-26
Lu
k
a
s Mueller
reload pages
afte
r
login/logout
;
r
e
move
some debug
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muelle
r
remo
v
e u
n
use
d
code
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muel
l
er
hav
e
emails sent to main_p
r
o
duc
t
i
on_site_u
r
l,
n
ot the
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Luk
a
s
M
ueller
t
weak input form
f
o
r new account
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
tw
e
a
k
account creation
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
remove
u
nneeded ma
s
on comp
o
ne
n
t
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
fix
d
b patch script f
o
r encoding p
a
sswords
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas M
u
e
l
l
e
r
remove
d
ebuggi
n
g alerts
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
fix parsing for dbhost;
add dbport
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muell
e
r
chan
g
ing
l
ogin page path on
webpages
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mu
e
ller
add
a
cookie warning m
e
ssage
.
commit
|
commitdiff
|
tree
2018-05-26
Luka
s
Mueller
Twea
k
login page
t
o look like
jav
a
script login
.
commit
|
commitdiff
|
tree
2018-05-26
L
u
kas Mu
e
ller
f
a
ctor ou
t
com
m
on
footer code elem
e
nts such that footers
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
Add ref
e
rer to login page
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mue
l
ler
tweak login comp
o
nen
t
s
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mu
e
lle
r
add
logout function
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muelle
r
add
r
udimentary pod
to logi
n
_u
s
er function
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Muel
l
er
d
ra
w
l
o
g
in button
s
using javascript
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
wor
k
in progress to
e
ncypt
passwo
r
ds
a
nd con
v
ert cgi
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lu
k
as
Mueller
fix
date range qu
e
ry
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
show
r
eal
d
ata, not ran
d
o
m data poi
n
ts
.
commit
|
commitdiff
|
tree
2018-05-26
L
u
kas M
u
el
l
er
add
an
e
xperimental
s
ect
i
on with an activity graph
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas
M
ueller
a
dd a db stats p
a
ge
.
commit
|
commitdiff
|
tree
2018-05-26
L
ukas Muel
l
e
r
fix
b
ug
s
with l
i
nkage_group_ids, works wi
t
h or without
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
a
d
d POD to modifi
e
d GenomeMaps
.
pm
.
commit
|
commitdiff
|
tree
2018-05-26
Luk
a
s Muelle
r
chang
e
m
a
p_id
t
o
m
ap_version_id
b
eca
u
se the
brapi interface
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
L
u
k
as Mueller
allo
w
f
i
ltering by
l
inkageGroupId as
i
n spec
i
fic
a
t
i
o
n
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas
Mueller
change
map_id to ma
p
_vers
i
on id in map constructor
.
.
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas
Mu
e
ller
imp
l
ement map position
cal
l
t
h
roug
h
C
view o
b
jects
.
commit
|
commitdiff
|
tree
2018-05-26
L
ukas Mu
e
ller
retr
i
eve m
a
p information
th
r
o
u
gh Cvi
e
w objects
.
commit
|
commitdiff
|
tree
2018-05-26
Lukas Mueller
Imple
m
ent
details function
- no
t
yet wor
k
i
ng
.
commit
|
commitdiff
|
tree
2018-05-25
Lukas Mue
l
ler
rem
o
ving old version o
f
insilicopcr in cgi-bin dir
.
.
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas Mue
l
ler
Merge pull r
e
quest #1897
from sol
g
enomi
c
s/topic/
e
ncode_passw
.
.
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas Mu
e
lle
r
fix password reset link
.
commit
|
commitdiff
|
tree
2018-05-24
L
u
kas
Mu
e
ller
Remove
p
rotoc
o
l from link, as it
should be a
l
ready
.
.
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas M
u
eller
fix hostna
m
e
i
n email link
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas Mueller
fix commented
o
u
t co
d
e
.
commit
|
commitdiff
|
tree
2018-05-24
Luka
s
Mueller
Merge pul
l
request
#18
9
4
f
ro
m
solgenomics
/
top
i
c/encode_passwords
commit
|
commitdiff
|
tree
2018-05-23
L
u
k
a
s
M
ue
l
ler
tw
e
ak
cookie
p
opup
.
commit
|
commitdiff
|
tree
2018-05-19
Lukas
Mue
l
ler
s
tart editing toward
s
BrAPI v1
.
1 compati
b
il
i
ty
commit
|
commitdiff
|
tree
2018-05-18
Lu
k
a
s Mu
e
ller
c
ha
n
ge page
S
ize a
n
d cu
r
re
n
tPa
g
e pa
r
ame
t
ers
t
o
int
.
.
.
commit
|
commitdiff
|
tree
2018-05-16
L
u
kas
Mu
e
ller
remove inclu
d
e
i
ntended for other bra
n
ch for now
.
commit
|
commitdiff
|
tree
2018-05-16
Lukas Mueller
M
erg
e
pull
r
equest #
1
864 from solgenomics/topic/common_foote
.
.
.
commit
|
commitdiff
|
tree
2018-05-16
Lukas Mueller
Merge
p
ull request
#
1876 fr
o
m solgenomics/t
o
pic/add_refacto
r
.
.
.
commit
|
commitdiff
|
tree
2018-05-16
Lukas M
u
eller
M
erge p
u
ll request #185
3
from solgenomics/topic/westc
o
tt
commit
|
commitdiff
|
tree
2018-05-16
Lukas Mueller
Me
r
ge pu
l
l request
#
1845 fr
o
m
solgen
o
mics/topic/locus
_
seq_an
.
.
.
commit
|
commitdiff
|
tree
2018-05-11
Lu
k
as Muelle
r
fix conflict in s
i
te
/
fo
o
ter
.
m
a
s
.
/
commit
|
commitdiff
|
tree
2018-05-10
Lukas Muell
e
r
Move common
foote
r
element
i
nclude into
t
he parent
.
.
.
commit
|
commitdiff
|
tree
2018-05-10
Lukas Mueller
Tweak redirect after l
o
gi
n
page
.
commit
|
commitdiff
|
tree
2018-05-09
Lukas Mueller
Mer
g
e pul
l
r
equ
e
st
#
1863
f
rom s
o
lgen
o
mi
c
s/topic/sol_mee
t
ing_2018
commit
|
commitdiff
|
tree
2018-05-09
Lukas Mueller
d
elete old cgi-b
i
n login scripts
.
commit
|
commitdiff
|
tree
2018-05-09
Luk
a
s
Mueller
Merg
e
p
ull request
#
1862 f
r
om
s
olgenomics/topic/var
i
tome_project
commit
|
commitdiff
|
tree
2018-05-08
Lukas
Mueller
remove dupli
c
ated co
d
e
.
commit
|
commitdiff
|
tree
2018-05-08
Lukas Mueller
mo
v
e preve
n
t
De
f
au
l
t
(
) to beginni
n
g of function
.
commit
|
commitdiff
|
tree
2018-05-08
L
u
ka
s
Mueller
remove debu
g
g
i
n
password logging
.
commit
|
commitdiff
|
tree
2018-05-07
Luka
s
Mueller
reload pages after
l
ogi
n
/logout; re
m
ove som
e
debug
.
.
.
commit
|
commitdiff
|
tree
2018-05-07
Lukas Mueller
remove unused code
.
commit
|
commitdiff
|
tree
2018-05-07
L
ukas
M
ue
l
l
e
r
have email
s
se
n
t
t
o
m
ain_productio
n
_site_url, no
t
the
.
.
.
commit
|
commitdiff
|
tree
2018-05-06
Lukas Mueller
t
weak input
f
or
m
for new account
.
commit
|
commitdiff
|
tree
2018-05-06
Lukas Muell
e
r
tweak acco
u
n
t
creation
.
commit
|
commitdiff
|
tree
2018-05-04
Lukas Muell
e
r
remove
u
nneed
e
d mason component
.
commit
|
commitdiff
|
tree
next