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Merge pull request #4858 from solgenomics/topic/accession_upload_synonyms
2024-03-05
I
saak Yosief
T
e
cle
Merge pull request #4837 f
r
om
s
olgen
o
m
i
c
s/t
o
pic/g
e
o
_
field_map_d3
commit
|
commitdiff
|
tree
2024-01-12
I
s
a
ak Yosief Tecle
Merg
e
pull
r
equest #4
7
79
from sol
g
enomics/to
p
ic/s
o
lg
s
.
.
.
commit
|
commitdiff
|
tree
2024-01-04
Isaak Yosie
f
Tecle
Up
d
a
te selection
_
p
o
p
ulations
.
mas
commit
|
commitdiff
|
tree
2023-12-22
Is
a
a
k Yosief T
e
cle
M
er
g
e pull r
e
q
u
e
st #4764 from
s
o
lge
n
omics/top
i
c/update_load
_
.
.
.
commit
|
commitdiff
|
tree
2023-09-12
I
s
a
ak Yosief Tecle
s
horten w
a
it time
between jobs
commit
|
commitdiff
|
tree
2023-09-12
Isaak Yosief Tecle
update logic
a
l
c
ompari
s
on
is
s
ues with R 4
.
3
commit
|
commitdiff
|
tree
2023-03-21
Isaak Y
o
si
e
f T
e
cle
clea
n
up
commit
|
commitdiff
|
tree
2010-05-14
Isaak Yosief
Tecle
testing git c
o
mm
i
t
.
.
commit
|
commitdiff
|
tree
2010-05-13
I
s
aak Yosief Tecle
r
emoved linge
r
ing use SimpleFormPage
.
.
commit
|
commitdiff
|
tree
2010-05-13
I
saa
k
Yosi
e
f Tecle
added some tooltipped
t
ext to cla
r
ify
o
n the stati
s
tical
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Isaak Yosief T
e
c
l
e
two-qtl scan
m
o
m
entar
i
ly not availabl
e
, it takes ve
r
y
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Isaak Yos
i
e
f
T
e
c
l
e
c
orrected a text on the POD
.
.
commit
|
commitdiff
|
tree
2010-05-12
Isaak Yosief
T
ecle
im
p
r
o
ved legend content
d
i
spl
a
y
.
.
.
added c
o
ntrol stuctures
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Isa
a
k
Y
osi
e
f Tecle
implemented single marker QTL analysis
.
.
.
commit
|
commitdiff
|
tree
2010-05-11
Isaa
k
Y
osief Tecl
e
included a 2
.
5 cM genome
size
o
ption
.
.
commit
|
commitdiff
|
tree
2010-05-11
Is
a
ak Yosief Tecle
adde a link t
o
t
h
e map
d
ata submission
g
uidelines
.
.
commit
|
commitdiff
|
tree
2010-05-11
Isaak Yosief
Tecl
e
some
e
dits
.
.
commit
|
commitdiff
|
tree
2010-05-07
Isaa
k
Yosief
Te
c
le
remove
d
new
l
ine
tag
.
.
commit
|
commitdiff
|
tree
2010-05-07
Isaa
k
Yosief Tecle
replaced co
m
ma delimiters with tab
.
.
commit
|
commitdiff
|
tree
2010-05-07
Isaak
Yosie
f
Tecle
re
p
l
a
ced 'g
e
t_
e
ncoded
_
arguments' with 'ge
t
_all_encoded_argum
.
.
.
commit
|
commitdiff
|
tree
2010-05-07
Isaak Yos
i
ef
Tecle
a
dded miss
i
ng us
e
CXGN::Map
(
was crashing t
h
e
scri
p
t
.
.
.
commit
|
commitdiff
|
tree
2010-05-06
Isaak Y
o
sief Tecle
valida
t
e_
a
ll
.
t: added a
m
i
s
sing alt tag that was inva
l
idatin
.
.
.
commit
|
commitdiff
|
tree
2010-05-06
Isaak Yosief Tecle
added QT
L
detail page (qtl
.
p
l), Qtl indivi
d
u
a
ls list
.
.
.
commit
|
commitdiff
|
tree
2010-05-06
Isaak Yos
i
e
f
Tecle
validate_a
l
l
.
t: e
d
ited html tags that were
f
ailing
.
.
.
commit
|
commitdiff
|
tree
2010-05-05
Isaa
k
Yosief Tecl
e
di
s
plays a comment sect
i
o
n
.
.
commit
|
commitdiff
|
tree
2010-05-05
Isaak Yosief Tecl
e
added
a
comm
e
nt sect
i
on
.
.
commit
|
commitdiff
|
tree
2010-05-04
Is
a
a
k Yosief Tecle
co
m
m
ented out a r
e
mn
a
nt cal
l
to
a
fu
n
ct
i
o
n
.
.
commit
|
commitdiff
|
tree
2010-05-04
Isa
a
k
Y
osi
e
f Tecle
added
p
opula
t
i
o
ns list to the personal p
a
ge of a submitter
.
.
.
commit
|
commitdiff
|
tree
2010-05-03
Isaak Yosie
f
Tecle
c
hange
d
file names to
b
e data t
y
p
e
a
nd po
p
ulation desc
r
i
p
tive
.
.
commit
|
commitdiff
|
tree
2010-05-03
Isaak Yosief Tecle
added a link
to the QTL data
s
ubmissi
o
n
inte
r
face
.
commit
|
commitdiff
|
tree
2010-05-03
I
s
aak Yosief Tecle
ah
.
.
cor
r
e
cted a t
y
p
o
.
.
.
commit
|
commitdiff
|
tree
2010-05-03
Isaak Yosief Tecle
add
e
d a co
m
ment
.
.
.
commit
|
commitdiff
|
tree
2010-05-03
Isaak Yosief Te
c
le
html tag edi
t
s
.
.
.
commit
|
commitdiff
|
tree
2010-05-03
Isaak
Y
osief Tecle
minor edits
.
.
commit
|
commitdiff
|
tree
2010-05-03
I
saak
Y
o
sief Te
c
le
ge
n
otype download script and r
e
lat
e
d modificati
o
ns
.
.
commit
|
commitdiff
|
tree
2010-04-27
Isa
a
k Y
o
sief Tecle
geneti
c
map is now linked t
o
a populat
i
on, if
a
p
plicable
.
.
.
commit
|
commitdiff
|
tree
2010-04-27
Isaak Yosief Tecle
QTL
m
ar
k
ers are now high
l
ighted on the po
p
ulatio
n
.
.
.
commit
|
commitdiff
|
tree
2010-04-27
Isaak Yosief Tecle
removed c
o
mmented ou
t
c
o
de
.
.
commit
|
commitdiff
|
tree
2010-04-26
Isaak Yosief Tecl
e
add
e
d a
link
to the QTL
submission interfac
e
s
.
.
commit
|
commitdiff
|
tree
2010-04-23
Isaak Yosief Tecl
e
r
e
o
rdered
s
ubsec
t
ions
.
.
commit
|
commitdiff
|
tree
2010-04-23
Isaak Yosief Te
c
le
c
o
nverted it to
mason co
m
ponent (qtl
/
qtl
.
m
a
s)
commit
|
commitdiff
|
tree
2010-04-23
Isaak
Yosief Tec
l
e
a qtl mason d
i
r
commit
|
commitdiff
|
tree
2010-04-22
I
saak Yos
i
e
f
Tecle
c
h
anges relat
e
d to the new QTL detail page; id
e
ntifies
.
.
.
commit
|
commitdiff
|
tree
2010-04-22
Isaak Yosief Tecle
a QTL detail page with
li
n
k
s
to
rel
e
vant datasets in SG
N
commit
|
commitdiff
|
tree
2010-04-22
Is
a
ak Yosief Tec
l
e
te
x
t
edits
.
.
commit
|
commitdiff
|
tree
2010-04-21
Isaak Yosief Tecle
edited
s
tatistics f
o
rm lay
o
ut
.
.
commit
|
commitdiff
|
tree
2010-04-21
Is
a
a
k
Yo
s
ief Tec
l
e
edited field
label
.
.
commit
|
commitdiff
|
tree
2010-04-16
Isaak Yosi
e
f
Tecle
minor re
f
ormatting to the dimensions
o
f the qtl plot
s
.
.
.
commit
|
commitdiff
|
tree
2010-04-15
Isa
a
k Yosi
e
f Tecle
minor clea
n
up
.
.
.
commit
|
commitdiff
|
tree
2010-04-12
Isaak Yo
s
ief Tecle
c
ommented out printi
n
g of some data
.
.
commit
|
commitdiff
|
tree
2010-04-09
I
s
aak
Y
osief Tecle
cha
n
g
es in
u
sage
o
f
t
he ba
y
esian credible interval
.
.
.
commit
|
commitdiff
|
tree
2010-04-09
Is
a
ak
Y
osief T
e
cle
qtl position is now estima
t
ed based o
n
bayesi
a
n credible
.
.
.
commit
|
commitdiff
|
tree
2010-03-30
Isaak Yosief T
e
c
l
e
now r/qtl ta
k
es cr
o
ss type fi
l
e a
s
input
f
ile,
r
e
ads
.
.
.
commit
|
commitdiff
|
tree
2010-03-30
Isaak
Yosief Tecle
now it creates a cross
t
y
pe
file
,
with c
r
oss type val
u
e
.
.
.
commit
|
commitdiff
|
tree
2010-03-26
Isaa
k
Yosi
e
f
Tecle
p
erltidy on cvterms_search
.
pl
commit
|
commitdiff
|
tree
2010-03-26
Isaak Yosief T
e
cle
made the 'search again'
s
ecti
o
n collapsible
commit
|
commitdiff
|
tree
2010-03-24
Isa
a
k Y
o
sief Tecle
added missing SG
N
::Context a
r
g
ument
commit
|
commitdiff
|
tree
2010-03-24
Is
a
ak Yosief
T
ecl
e
c
vt
e
rms/u
s
er subm
i
tted traits a
r
e linked t
o
the
correspon
d
in
.
.
.
commit
|
commitdiff
|
tree
2010-03-24
Is
a
ak Yosie
f
T
ecle
replace
d
use of C
X
GN::VHost
with SGN::Context; rear
r
anged
.
.
.
commit
|
commitdiff
|
tree
2010-03-23
Isaak Y
o
s
ie
f
Tecle
perltidy on population_indls
.
pl
commit
|
commitdiff
|
tree
2010-03-23
I
s
a
a
k Yosief Tecl
e
re-o
r
d
e
red execution of
t
he QTL analys
i
s
an
d
d
i
splay
.
.
.
commit
|
commitdiff
|
tree
2010-03-23
I
s
aak
Yosief
T
e
c
le
QTL a
n
alysis on cvterms/us
e
r submitted tra
i
t
s i
s
allow
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-03-23
Is
a
ak
Y
osief
T
ecle
perltidy on pop_downl
o
ad
.
pl
commit
|
commitdiff
|
tree
2010-03-23
Isaak Yosief T
e
cle
r
e
move
d
spacing in the header that
was
faili
n
g the
.
.
.
commit
|
commitdiff
|
tree
2010-03-22
Isaak
Yosi
e
f
Tecle
rearranged page subs
e
ctions
.
.
.
commit
|
commitdiff
|
tree
2010-03-22
Isaa
k
Yosief
T
ecle
stepwise
p
rog
r
ess of qtl data uploading is now emailed
.
.
.
commit
|
commitdiff
|
tree
2010-03-17
I
s
a
ak Yo
s
ief Tecle
perltidy
on tr
a
i
t_list
.
pl
commit
|
commitdiff
|
tree
2010-03-17
I
saak Yosief Tecle
page t
i
tle changes
.
.
.
commit
|
commitdiff
|
tree
2010-03-16
Isaak Yosief Tecle
some refining of
co
d
e
.
.
commit
|
commitdiff
|
tree
2010-03-16
Isaak
Y
o
s
ief Te
c
l
e
added a condition
t
o check if
a us
e
r is l
o
gg
e
din before
.
.
.
commit
|
commitdiff
|
tree
2010-03-12
Is
a
ak Yos
i
ef Tecle
edited a
typo
.
commit
|
commitdiff
|
tree
2010-03-10
Is
a
ak Yosief T
e
cle
a
bug fix
.
.
commit
|
commitdiff
|
tree
2010-03-10
Isa
a
k
Y
osief Tecle
now also qtl
populations submitted by use
r
s (
a
nd if
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
Isaak Yos
i
ef Te
c
le
ch
a
nged t
h
e object of th
e
i
s
_from_qtl me
t
h
od
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
Isaak Y
o
sie
f
T
e
cle
d
e
pending
o
n wheth
e
r a trait
i
s
mapped t
o
the
S
P ontology
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
I
saak Yosief Tecl
e
a detail p
a
ge for user
s
ubm
i
tte
d
traits
.
.
commit
|
commitdiff
|
tree
2010-03-05
I
saak Yosief
T
ecl
e
f
i
xed a
b
ug
r
elated to
u
ser t
r
aits loa
d
i
ng to the db
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
Isaak Yosief Te
c
le
c
leaned
c
ode
.
.
commit
|
commitdiff
|
tree
2010-03-04
Isa
a
k Yo
s
ief Tecle
related to the chan
g
e in funct
i
o
n
name (has_qtl_data
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Isaak Yos
i
e
f
T
ecle
fixed
h
t
m
l t
a
gs that
were fa
i
ling page tests
commit
|
commitdiff
|
tree
2010-03-02
Isaak Yosief Tecle
added a backslsh to image t
a
g
commit
|
commitdiff
|
tree
2010-03-02
Isaak
Y
o
sief
T
ecle
add
e
d full stop at the
e
nd of a s
e
ntence
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Is
a
ak
Y
osie
f
T
e
cle
edited punctuations
.
.
.
commit
|
commitdiff
|
tree
2010-02-26
Isaak Yosi
e
f
Tecle
add
e
d the QTL Map
p
i
n
g lin
k
and
descriptio
n
.
.
commit
|
commitdiff
|
tree
2010-02-26
Isaak
Y
osief Tecle
added QT
L
Ma
p
ping
.
.
.
commit
|
commitdiff
|
tree
2010-02-26
Isa
a
k
Yosie
f
Tecl
e
a pa
g
e r
e
direct
t
o th
e
qtl search in
t
erface
.
Int
e
nded
.
.
.
commit
|
commitdiff
|
tree
2010-02-26
I
s
aak
Y
osief Tecle
creating
a
qtl dir
.
.
.
h
a
s a page re
d
irect to th
e
q
tl
.
.
.
commit
|
commitdiff
|
tree
2010-02-25
I
s
aak Yosief Tecl
e
fix
e
d some mi
n
or errorr related to the popul
a
tions
.
.
.
commit
|
commitdiff
|
tree
2010-02-25
Isaak Y
o
sief Tecle
added a s
u
bse
c
tio
n
wh
e
r
e
s
ubmitters populations
a
re
.
.
.
commit
|
commitdiff
|
tree
2010-02-24
Isaak Yosief Tecle
genet
i
c maps of (qtl) pop
u
lations set
to p
r
iva
t
e are
.
.
.
commit
|
commitdiff
|
tree
2010-02-23
Is
a
ak Yosief Tecle
minor form spacing
a
djustm
e
nt
.
.
commit
|
commitdiff
|
tree
2010-02-23
Isa
a
k Yosief Tecle
merging [17053:17278]
.
.
br
a
nches/tecl
e
to trun
k
commit
|
commitdiff
|
tree
2010-02-23
Isaak Yosief Tecle
mergi
n
g [16954:17278]
.
.
branches/tecle to trunk
commit
|
commitdiff
|
tree
2010-02-23
Isaak Yo
s
ief T
e
cle
mer
g
ing [16954:17278]
.
.
b
ra
n
ch
e
s/tecle to trunk
commit
|
commitdiff
|
tree
2010-02-23
Isaak Y
o
sief Te
c
le
merging [
1
6
9
5
4
:17278]
.
.
branches/te
c
le
t
o trunk
commit
|
commitdiff
|
tree
2010-02-23
Isa
a
k Yosief Tecle
mer
g
ing
[
17162:1
7
2
7
8
]
.
.
branch
e
s/tecl
e
to trunk
commit
|
commitdiff
|
tree
2010-02-23
Isaak
Yosi
e
f
Te
c
le
addi
n
g
o
r
ganism_b
r
ow
s
er
.
pl [17
0
53]
.
.
branches/t
e
cle
.
.
.
commit
|
commitdiff
|
tree
2010-02-23
Isaa
k
Yosie
f
T
ecl
e
m
erg
i
ng [16968:
1
727
8
]
.
.
branches/tecle t
o
trunk
commit
|
commitdiff
|
tree
2010-02-23
I
s
aak Yosief Tec
l
e
add
i
ng qtl_load
.
pl [17223]
.
.
branches/tecle to t
r
unk
commit
|
commitdiff
|
tree
2010-02-23
Is
a
ak Yosief Tecle
mergi
n
g [17
2
24:172
7
8] branches/tecle to trun
k
commit
|
commitdiff
|
tree
next