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2011-09-22	Jonathan "Duke"...	Attempt to get closer to actually grabbing useful sequence...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Make the bulk gene example id fit in the box	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Add an example gene identifier to the bulk gene mason...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Teach the bulk gene controller about file uploads,...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Merge remote branch 'origin/topic/bulk_gene' into topic...	commit \| commitdiff \| tree
2011-09-22	Jonathan "Duke"...	Add a bulk gene download mason component	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a gene tab to the bulk menu	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Start implementing bulk gene downloads	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Merge remote branch 'origin/topic/bulk_download'	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Make the bulk feature download work correctly with...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add more bulk feature tests	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Tweak the sequence API	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a test for the current behavior of throwing a 404...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Add a failing test; Currently, if any identifiers are...	commit \| commitdiff \| tree
2011-09-19	Jonathan "Duke"...	Fix bug where leading/trailing whitespace in identifier...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Fix caching logic, cache seq ids and add failing test	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Always append newline between form input and upload...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Add tests for appending file uploads to form input	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Refactor a function out of an inner scope	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Provide txt and fasta links and add tests	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Fix a subtle bug where our sha1 did not take into account...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Refactor menu code into a catalyst action and render...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	These are actually integration tests	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Implement file upload feature, which appends the contents...	commit \| commitdiff \| tree
2011-09-16	Jonathan "Duke"...	Remove radio boxes from bulk feature mason component...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Get the feature js menu bar on the bulk feature page	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix bulk feature ui so that feature_type is a radio...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix bug and add test for case when nothing is submitted	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Give real examples in the bulk feature mason component	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Use freeze+thaw instead of get+set; This makes the...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Add bulk controller test	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Add more bulk controller tests	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Attempt to test for cache directory removal bug in...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Extend Catalyst::Controller earlier	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Remove some unnecessary code from the bulk controller	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Correct some bulk feature tests and tweak some settings	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix stringification and sequence identifier bugs in...	commit \| commitdiff \| tree
2011-09-15	Jonathan "Duke"...	Fix a bulk test so that it correctly verifies no wrong...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Closer to a working prototype...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Don't use a lockfile for now, get closer to a basic...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Fix lockfile issue and improve tests for bulk feature...	commit \| commitdiff \| tree
2011-09-14	Jonathan "Duke"...	Improve tests	commit \| commitdiff \| tree
2011-09-13	Jonathan "Duke"...	Correctly forward to the fetch_sequences action in...	commit \| commitdiff \| tree
2011-09-13	Jonathan "Duke"...	Make sure the path to our bulk feature cache exists...	commit \| commitdiff \| tree
2011-09-13	Jonathan "Duke"...	Create a bulk feature download cache	commit \| commitdiff \| tree
2011-09-12	Jonathan "Duke"...	Grab the sequences of the identifier list and use SGN...	commit \| commitdiff \| tree
2011-09-12	Jonathan "Duke"...	Remove non-existing function from our exports	commit \| commitdiff \| tree
2011-09-12	Jonathan "Duke"...	Fill out the bulk controller a bit more	commit \| commitdiff \| tree
2011-09-12	Jonathan "Duke"...	Add a mason component for downloading bulk features	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	perltidy /bulk/input.pl	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Modernize bulk/input.pl and clean up AUTHORS	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Fix the URL of the bulk loader and improve a test	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Add a skeleton bulk download controller	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Finish organizing the test suite and updating the test...	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Organize the test suite	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Add a readme for our test suite, fixes #27	commit \| commitdiff \| tree
2011-09-09	Jonathan "Duke"...	Merge branch 'topic/organism_image'	commit \| commitdiff \| tree
2011-09-08	Jonathan "Duke"...	Add more tests to SGN::Image after finally figuring...	commit \| commitdiff \| tree
2011-09-07	Jonathan "Duke"...	Add a test for some of the SGN::Image methods	commit \| commitdiff \| tree
2011-09-07	Jonathan "Duke"...	Add some basic SGN::Image tests	commit \| commitdiff \| tree
2011-09-07	Jonathan "Duke"...	Make SGN::Image grab a dbh from SGN::Context if one...	commit \| commitdiff \| tree
2011-09-07	Jonathan "Duke"...	Remove cruft and add Modern::Perl to SGN::Image	commit \| commitdiff \| tree
2011-08-29	Jonathan "Duke"...	Fix EST Library search and add tests	commit \| commitdiff \| tree
2011-08-08	Jonathan "Duke"...	Lift the use of List::MoreUtils to the top of view_result.pl	commit \| commitdiff \| tree
2011-06-21	Jonathan "Duke"...	Link to organism pages in the organism search results	commit \| commitdiff \| tree
2011-06-20	Jonathan "Duke"...	The behavior of defaulting to gene search was deemed...	commit \| commitdiff \| tree
2011-06-20	Jonathan "Duke"...	Fix some bugs in the new search controller	commit \| commitdiff \| tree
2011-06-20	Jonathan "Duke"...	Merge pull request #23 from solgenomics/topic/blast_bug	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Add more POD to view_result.pl	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Add three more tests for the content returned by view_result.pl	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Make the view_result.pl tests pass	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Modernize view_result.pl	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Give view_result.pl some proper POD	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Use the correct path to the blast reports and add a...	commit \| commitdiff \| tree
2011-06-17	Jonathan "Duke"...	Add a failing test for a bug in our BLAST report viewer	commit \| commitdiff \| tree
2011-06-14	Jonathan "Duke"...	Make SGN::Controller::Stock immutable	commit \| commitdiff \| tree
2011-06-14	Jonathan "Duke"...	Add failing stock search test, found by rbuels++	commit \| commitdiff \| tree
2011-06-14	Jonathan "Duke"...	Make the tests pass by using get_ok instead of follow_link_ok	commit \| commitdiff \| tree
2011-06-14	Jonathan "Duke"...	Improve stock search test name	commit \| commitdiff \| tree
2011-06-14	Jonathan "Duke"...	Try to make tempfile symlinking less fragile	commit \| commitdiff \| tree
2011-06-13	Jonathan "Duke"...	remove ill-formed feature search integration test	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	fix funkiness in expression search subtabs	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	fix organism search test	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	Merge branch 'search_controller'	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	add the search tabs the main search index	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	do not link to insitu search	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	Forward to the correct private path	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	Attempt to get organism controller to play nice with...	commit \| commitdiff \| tree
2011-06-10	Jonathan "Duke"...	Put organism search under the search controller namespace	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	give the search controller mason component a better...	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	Use skip_cgi param to SGN::Test::WWW::Mechanize	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	Don't link to feature search yet and add a test for...	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	Correct redirect direct_search.pl requests and improve...	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	Add a bit of POD to the new search controller	commit \| commitdiff \| tree
2011-06-09	Jonathan "Duke"...	Do not use $c in direct_search.pl and improve search...	commit \| commitdiff \| tree
2011-06-07	Jonathan "Duke"...	Add an insitu search tab	commit \| commitdiff \| tree
2011-06-07	Jonathan "Duke"...	Add organism and feature search tabs	commit \| commitdiff \| tree
2011-06-07	Jonathan "Duke"...	Make the old glossarysearch.pl redirect to the new...	commit \| commitdiff \| tree
2011-06-07	Jonathan "Duke"...	Add glossary search to the new catalyst search controller	commit \| commitdiff \| tree
2011-06-07	Jonathan "Duke"...	Add lots of integration tests for various SGN searches	commit \| commitdiff \| tree
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