repo.or.cz
/
sgn.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
use relative URIs for doing redirects for CGIs
2011-08-29
Jon
a
than "Duke"
.
.
.
Fix EST Library se
a
r
c
h and a
d
d t
e
sts
commit
|
commitdiff
|
tree
2011-08-08
J
o
nathan "Duke"
.
.
.
Lift the use of
Lis
t
::MoreUtils
t
o
the to
p
of view
_
r
e
sult
.
pl
commit
|
commitdiff
|
tree
2011-06-21
Jonathan "Duke"
.
.
.
L
ink to
organism
p
ages in
t
he
o
rganism search r
e
sults
commit
|
commitdiff
|
tree
2011-06-20
Jonathan "
D
uke"
.
.
.
The
b
eh
a
vior of d
e
f
a
ulting to g
e
ne
search
w
as deemed
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
J
o
n
a
than "Duke"
.
.
.
Fix some
bugs
in the new search co
n
t
roller
commit
|
commitdiff
|
tree
2011-06-20
J
onathan "Duke
"
.
.
.
Merg
e
p
ull
reque
s
t #23 f
r
om sol
g
enomics
/
topic/b
l
ast_
b
ug
commit
|
commitdiff
|
tree
2011-06-17
Jona
t
han "Duke"
.
.
.
Add more POD to view_res
u
lt
.
pl
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "Duke"
.
.
.
Add three m
o
re
tests for t
h
e
content
r
eturned by view_result
.
pl
commit
|
commitdiff
|
tree
2011-06-17
Jonath
a
n "Duke"
.
.
.
Ma
k
e the v
i
ew_
r
esult
.
pl
tests pass
commit
|
commitdiff
|
tree
2011-06-17
J
o
nathan
"Duke"
.
.
.
Mod
e
r
n
ize view_result
.
p
l
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "Duke"
.
.
.
Give view_result
.
p
l some proper POD
commit
|
commitdiff
|
tree
2011-06-17
J
o
nathan "
D
uke
"
.
.
.
U
s
e
the
correct path to
the
blast reports
a
nd
a
d
d a
.
.
.
commit
|
commitdiff
|
tree
2011-06-17
J
onath
a
n "Duke"
.
.
.
A
dd a fa
i
ling test
f
or a bug in our BLAST report vi
e
wer
commit
|
commitdiff
|
tree
2011-06-14
Jonat
h
an "Duke"
.
.
.
Make SGN::Cont
r
olle
r
:
:Stock
immutable
commit
|
commitdiff
|
tree
2011-06-14
Jo
n
a
than "Duke"
.
.
.
Add fai
l
i
n
g
st
o
ck search test, found by rbuels+
+
commit
|
commitdiff
|
tree
2011-06-14
Jonathan
"
Duk
e
"
.
.
.
M
a
ke the tests pass by
u
sing g
e
t_ok ins
t
ead of follow_lin
k
_ok
commit
|
commitdiff
|
tree
2011-06-14
Jonathan "Duke
"
.
.
.
Imp
r
ove s
t
ock search te
s
t nam
e
commit
|
commitdiff
|
tree
2011-06-14
Jonathan "Duke"
.
.
.
Try to make temp
f
ile symlinkin
g
less frag
i
le
commit
|
commitdiff
|
tree
2011-06-13
Jo
n
a
than "Duke
"
.
.
.
r
emove ill
-
for
m
ed feature sea
r
c
h
integratio
n
t
est
commit
|
commitdiff
|
tree
2011-06-10
Jonat
h
an "Duke"
.
.
.
fix funkiness in expressio
n
s
earch subtabs
commit
|
commitdiff
|
tree
2011-06-10
Jonatha
n
"Duk
e
"
.
.
.
fix organism search test
commit
|
commitdiff
|
tree
2011-06-10
Jonathan
"
Duke"
.
.
.
Merge
branch 'searc
h
_controller'
commit
|
commitdiff
|
tree
2011-06-10
J
onathan "Duk
e
"
.
.
.
a
dd the search
t
abs the
main search in
d
ex
commit
|
commitdiff
|
tree
2011-06-10
J
on
a
t
han
"
Du
k
e"
.
.
.
do not link t
o
insitu s
e
ar
c
h
commit
|
commitdiff
|
tree
2011-06-10
Jo
n
athan "Duke"
.
.
.
For
w
ard to the correct privat
e
path
commit
|
commitdiff
|
tree
2011-06-10
Jo
n
athan "Duke"
.
.
.
Attempt t
o
get
organism
c
o
ntrolle
r
t
o
play nice with
.
.
.
commit
|
commitdiff
|
tree
2011-06-10
Jonatha
n
"Duke"
.
.
.
P
ut organism search
u
nder
t
he search
controlle
r
n
a
mespace
commit
|
commitdiff
|
tree
2011-06-09
J
o
nathan "Du
k
e"
.
.
.
give the search controller mason compo
n
ent a bett
e
r
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Jon
a
t
h
an "Duke"
.
.
.
Use sk
i
p_cgi
para
m
t
o
SGN
:
:
T
est::WWW::Mechanize
commit
|
commitdiff
|
tree
2011-06-09
Jon
a
t
h
a
n
"
D
u
ke"
.
.
.
Don
'
t link to
f
eatur
e
search yet and add a test for
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Jonathan
"Duk
e
"
.
.
.
Corre
c
t redirect
d
i
r
e
ct_search
.
pl req
u
ests and im
p
ro
v
e
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Jona
t
han "Du
k
e"
.
.
.
Add a bit of POD to th
e
new s
e
arch
controller
commit
|
commitdiff
|
tree
2011-06-09
Jonath
a
n "
D
uke"
.
.
.
Do not
u
se $c in direct_search
.
p
l
and impr
o
ve search
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "D
u
ke"
.
.
.
A
d
d an insitu search tab
commit
|
commitdiff
|
tree
2011-06-07
Jona
t
han
"
D
uke"
.
.
.
Add organism and feature
s
earch
tabs
commit
|
commitdiff
|
tree
2011-06-07
J
onatha
n
"Duke"
.
.
.
Make
t
he old
g
lossarysearch
.
pl redirect to
t
he ne
w
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jonatha
n
"Duke"
.
.
.
A
d
d
glossary
s
earch to the new ca
t
alyst search control
l
er
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke"
.
.
.
Add lot
s
of integration tests for va
r
ious
SGN
s
e
a
rch
e
s
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke
"
.
.
.
Fix phe
n
otype
s
ea
r
ch action and ad
d
tests
commit
|
commitdiff
|
tree
2011-06-07
J
onat
h
an "Duke"
.
.
.
fix the template_e
x
per
i
ment_plat
f
or
m
search
a
ction
commit
|
commitdiff
|
tree
2011-06-07
Jona
t
ha
n
"Duke"
.
.
.
I
m
prove test
s
and add s
e
a
r
ch a
l
ia
commit
|
commitdiff
|
tree
2011-06-07
J
o
nathan "Du
k
e
"
.
.
.
Fix a bug wit
h
search co
n
troller ar
g
s an
d
a
dd lot
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duk
e
"
.
.
.
Make the
searc
h
con
t
r
o
ller use the new
U
RL scheme
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke"
.
.
.
Put search co
n
t
roller
tests
in a more reasonable
plac
e
commit
|
commitdiff
|
tree
2011-06-07
Jo
n
a
than "Duke"
.
.
.
U
pda
t
e P
O
D and t
e
st to re
m
ove remna
n
ts of D
i
rect
S
earch
commit
|
commitdiff
|
tree
2011-06-02
J
onathan "Duke"
.
.
.
fix est se
a
r
ch
commit
|
commitdiff
|
tree
2011-06-02
Jonathan
"
Duke
"
.
.
.
Teach our catalyst sea
r
ch action to match regardless
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
Jonat
h
an "Duke"
.
.
.
Forward to a mason c
o
mponent s
o
th
e
aut
o
handl
e
r is
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
Jonathan "Duk
e
"
.
.
.
Gut the old direct_se
a
rc
h
.
p
l
a
n
d fix up the new
s
earch
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
J
onathan "Duke"
.
.
.
Conver
t
crufty d
i
rect_search
.
pl to sligh
t
ly les
s
cruf
t
y
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "
D
uke"
.
.
.
Get rid of i
n
dex
.
pl b
e
cause it creates an
e
ndless redirect
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
h
a
n
"
Duke"
.
.
.
N
o
need for Cat
a
lystX::Glob
a
lCon
t
e
xt
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
h
a
n
"
D
u
k
e"
.
.
.
gut /search/index
.
pl and
mak
e
it r
e
direct to /s
e
a
r
ch
commit
|
commitdiff
|
tree
2011-06-01
Jonath
a
n "Du
k
e
"
.
.
.
F
i
x
said t
e
sts
commit
|
commitdiff
|
tree
2011-06-01
J
o
nathan
"
Duke"
.
.
.
Add eve
r
y kind of search to our
v
alid
a
ti
o
n
t
ests
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Teach direct_search
.
pl
h
ow t
o
redirect
t
o the new
controller
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jo
n
athan "Duke"
.
.
.
Add
more search tes
t
s
commit
|
commitdiff
|
tree
2011-06-01
Jonatha
n
"Duke"
.
.
.
add a
n
d
re
a
r
range
s
ome v
a
lidation tes
t
s
commit
|
commitdiff
|
tree
2011-06-01
Jonatha
n
"Duke"
.
.
.
a
dd some search tes
t
s
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "
D
u
ke"
.
.
.
add a v
a
lidatio
n
test for glossary sea
r
ch
commit
|
commitdiff
|
tree
2011-06-01
J
o
nathan "Duke"
.
.
.
Merge
b
r
a
nch 'mas
t
er' into se
a
rch_cont
r
olle
r
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Get rid of t
h
e ma
d
dening C
o
nf
i
g
::General warning
s
commit
|
commitdiff
|
tree
2011-06-01
Jon
a
than "
D
uke"
.
.
.
D
i
rec
t
Search is now Sea
r
ch
commit
|
commitdiff
|
tree
2011-06-01
J
o
nathan "Duke"
.
.
.
s/direct//g
commit
|
commitdiff
|
tree
2011-06-01
Jon
a
than "Duke"
.
.
.
R
emov
e
ju
n
k
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Modern
i
ze CX
G
N::Searc
h
::CannedForms
:
:M
a
rkerSearch
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Ge
t
rid of some deps
t
hat will
go away
soon
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Moderniz
e
CannedForms a
n
d
don't use G
l
oba
l
Conte
x
t
in
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
J
o
nathan "Duke
"
.
.
.
follow rbuels++ advice and
d
o
a 301 redirect at the
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
han
"
D
uke"
.
.
.
Add th
e
legacy pa
t
h o
f
d
i
rect_search to
t
he new contro
l
ler
commit
|
commitdiff
|
tree
2011-06-01
J
o
nathan "Duke"
.
.
.
Merge remote-tracking bran
c
h
'
o
r
i
g
in/
t
opic/organism_sea
r
ch
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonatha
n
"Duke"
.
.
.
A
dd
a skeleton
d
irect search catal
y
st
c
ontro
l
ler
commit
|
commitdiff
|
tree
2011-05-25
Jon
a
th
a
n "Duke"
.
.
.
Merge bra
n
ch 'topic
/
sec
r
etom'
commit
|
commitdiff
|
tree
2011-05-25
Jonathan "
D
uke"
.
.
.
M
e
r
ge branch 'master' into topic/secretom
commit
|
commitdiff
|
tree
2011-05-11
Jona
t
han "Duke"
.
.
.
Conv
e
rt ajax organism controlle
r
integrati
o
n tests
.
.
.
commit
|
commitdiff
|
tree
2011-05-11
Jonatha
n
"Duke"
.
.
.
Move an e
x
a
m
ple selenium te
s
t t
o
t
he proper home
commit
|
commitdiff
|
tree
2011-05-06
Jon
a
than "Duk
e
"
.
.
.
Make more cv
t
e
r
m
ajax integratio
n
tests fail more gr
a
cefu
l
ly
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonatha
n
"Duke"
.
.
.
Make
c
vter
m
ajax
integra
t
ion tests fail more gracefully
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan
"
Duk
e
"
.
.
.
Rev
e
rt "fix test
_
all
.
pl hanging if server fails to
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonat
h
a
n
"Duke"
.
.
.
Rever
t
"clean
up ser
v
er
process
if
i
t dies"
commit
|
commitdiff
|
tree
2011-05-06
Jona
t
h
a
n "Duke"
.
.
.
perltidy bio
s
ou
r
c
e
validation tests
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke"
.
.
.
Don't use SGN_TEST_SERV
E
R in t
h
e bioso
u
rce validation
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonath
a
n
"
Duk
e
"
.
.
.
Modernize
t
h
e
blast index
.
pl
commit
|
commitdiff
|
tree
2011-05-05
Jonath
a
n
"Duke"
.
.
.
Add some us
e
ful warnings
t
o
t/test_all
.
pl
to
d
ebug
.
.
.
commit
|
commitdiff
|
tree
2011-05-05
Jonathan "Duke"
.
.
.
Squas
h
a warning in the Cview controller
commit
|
commitdiff
|
tree
2011-05-05
Jonathan "Duke
"
.
.
.
S
q
uas
h
a war
n
i
ng
commit
|
commitdiff
|
tree
2011-05-04
Jonathan "Duke"
.
.
.
Crush s
o
me warnings
commit
|
commitdiff
|
tree
2011-05-04
Jo
n
athan "Du
k
e"
.
.
.
Squa
s
h
warnings
commit
|
commitdiff
|
tree
2011-05-04
Jona
t
ha
n
"
D
uke"
.
.
.
Make al
i
gn_viewer
.
t
tests use SGN
:
:Test::WW
W
:
:
Mechan
i
ze
commit
|
commitdiff
|
tree
2011-05-04
Jonathan "Duk
e
"
.
.
.
Make SGN::Test:
:
Data q
u
ieter by default
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "D
u
ke"
.
.
.
Fi
x
Content-dispo
s
ition test for SG
N
::Controller::D
o
wnload
commit
|
commitdiff
|
tree
2011-05-03
Jonath
a
n "Du
k
e"
.
.
.
f
ix typo in sgn
.
c
onf
commit
|
commitdiff
|
tree
2011-05-03
Jonathan
"
Duke"
.
.
.
G
r
o
o
m form
a
ttinghelpers
.
t a bit
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "Duke"
.
.
.
Prevent some
u
ninitialized value warnings
commit
|
commitdiff
|
tree
2011-04-26
Jon
a
t
ha
n
"Du
k
e
"
.
.
.
Mak
e
t
/01app
.
t use Test::
M
o
s
t (trigger
j
itterb
u
g)
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duk
e
"
.
.
.
Ti
d
y up a script
t
o tempt the J
i
t
t
erbug gods
commit
|
commitdiff
|
tree
2011-04-26
Jo
n
athan "D
u
ke"
.
.
.
Ye
t
another trivial change to trigger Jitterbug
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duke"
.
.
.
Ig
n
o
re a f
i
l
e
whic
h
is gener
a
ted by
newer Module::Build's
commit
|
commitdiff
|
tree
2011-04-26
Jonat
h
an "Duke"
.
.
.
Triv
i
al change
to B
u
i
l
d
.
P
L to trigg
e
r
jitterb
u
g
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duke"
.
.
.
Merge branch 'master' into to
p
ic/
s
ecretom
commit
|
commitdiff
|
tree
next