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use relative URIs for doing redirects for CGIs
2011-08-29
Jonathan
"
D
uke"
.
.
.
Fix EST Libra
r
y
s
earch and
a
dd
t
est
s
commit
|
commitdiff
|
tree
2011-08-08
J
o
natha
n
"Duke"
.
.
.
L
i
ft the us
e
of
L
ist
:
:Mo
r
eUtil
s
to the t
o
p of view
_
re
s
ult
.
pl
commit
|
commitdiff
|
tree
2011-06-21
Jonathan "Du
k
e"
.
.
.
Link to orga
n
ism pages in the organism search re
s
ults
commit
|
commitdiff
|
tree
2011-06-20
Jo
n
ath
a
n "Duke"
.
.
.
The b
e
havior of def
a
ulting to gene sear
c
h was d
e
emed
.
.
.
commit
|
commitdiff
|
tree
2011-06-20
J
o
n
a
t
han "Duke"
.
.
.
Fi
x
some bugs in the new sea
r
ch contro
l
ler
commit
|
commitdiff
|
tree
2011-06-20
Jonath
a
n "
D
uke
"
.
.
.
Merge
p
ull re
q
uest #23 from solgenomic
s
/top
i
c/blast_bug
commit
|
commitdiff
|
tree
2011-06-17
Jona
t
han "Duke"
.
.
.
Add more POD to v
i
ew_result
.
pl
commit
|
commitdiff
|
tree
2011-06-17
J
onatha
n
"Duke"
.
.
.
Add
t
h
r
e
e
m
ore
t
est
s
for
the cont
e
nt returned by vie
w
_result
.
pl
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "Duke"
.
.
.
M
a
k
e the vie
w
_
r
esult
.
pl te
s
ts pas
s
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "D
u
ke"
.
.
.
Modernize view_result
.
pl
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "Duke"
.
.
.
G
iv
e
view_result
.
pl s
o
me proper POD
commit
|
commitdiff
|
tree
2011-06-17
Jonatha
n
"Duke"
.
.
.
Use the correc
t
path to the blast repor
t
s and add
a
.
.
.
commit
|
commitdiff
|
tree
2011-06-17
Jonathan "Duke"
.
.
.
Ad
d
a
f
a
iling
test for a bug in
o
ur BL
A
ST re
p
ort view
e
r
commit
|
commitdiff
|
tree
2011-06-14
Jonathan "Duke"
.
.
.
Make SGN::Controller::Stock imm
u
t
able
commit
|
commitdiff
|
tree
2011-06-14
Jonathan "Du
k
e"
.
.
.
Add failing
st
o
ck search te
s
t, fo
u
nd by rb
u
els++
commit
|
commitdiff
|
tree
2011-06-14
Jonatha
n
"Duke"
.
.
.
Make the test
s
pass b
y
u
s
ing
g
et_ok inst
e
ad
of follow_link
_
ok
commit
|
commitdiff
|
tree
2011-06-14
Jon
a
than "Duke
"
.
.
.
I
mprov
e
s
tock sear
c
h test n
a
me
commit
|
commitdiff
|
tree
2011-06-14
Jonathan "Duk
e
"
.
.
.
Try
t
o make tempfile symlinking less fr
a
gile
commit
|
commitdiff
|
tree
2011-06-13
Jonat
h
an "Duke"
.
.
.
remove ill-form
e
d fe
a
t
u
re
s
e
arc
h
integration test
commit
|
commitdiff
|
tree
2011-06-10
Jona
t
han
"Duke"
.
.
.
fix f
u
nk
i
n
ess in expr
e
ssio
n
search
subtabs
commit
|
commitdiff
|
tree
2011-06-10
Jonathan "Duke"
.
.
.
fix or
g
anism s
e
arch t
e
st
commit
|
commitdiff
|
tree
2011-06-10
Jonathan "Duke"
.
.
.
M
erg
e
br
a
nch 'sear
c
h_controller'
commit
|
commitdiff
|
tree
2011-06-10
Jonathan "Duke"
.
.
.
add the sea
r
ch
ta
b
s the mai
n
search index
commit
|
commitdiff
|
tree
2011-06-10
Jonathan
"Duke"
.
.
.
d
o not l
i
nk
to
ins
i
tu s
e
arch
commit
|
commitdiff
|
tree
2011-06-10
Jon
a
t
han "Duk
e
"
.
.
.
Fo
r
wa
r
d to the cor
r
ect private p
a
t
h
commit
|
commitdiff
|
tree
2011-06-10
J
onathan "D
u
ke"
.
.
.
At
t
empt
to get organism control
l
er to play
nice
w
ith
.
.
.
commit
|
commitdiff
|
tree
2011-06-10
Jo
n
athan "Duke"
.
.
.
Put organi
s
m search under
t
he search cont
r
o
l
ler name
s
pace
commit
|
commitdiff
|
tree
2011-06-09
Jonat
h
a
n
"
D
uke"
.
.
.
give the search controller
mason
component a be
t
ter
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
J
o
nathan "Du
k
e"
.
.
.
Use sk
i
p_cgi
para
m
to SGN:
:
Test::WWW::Mechanize
commit
|
commitdiff
|
tree
2011-06-09
Jonath
a
n
"Du
k
e"
.
.
.
D
on't link to featu
r
e se
a
rch yet an
d
add a test fo
r
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Jonathan "Duke"
.
.
.
Correct
redire
c
t direct_
s
earch
.
pl re
q
uests
and improve
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Jonathan
"
Duke"
.
.
.
Add a bit of POD to
the new
search contro
l
ler
commit
|
commitdiff
|
tree
2011-06-09
Jonathan
"Duk
e
"
.
.
.
Do
n
ot use $c in dire
c
t
_
s
e
a
rch
.
pl
a
n
d
improve search
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "
D
uke"
.
.
.
Add an ins
i
tu s
e
a
r
ch tab
commit
|
commitdiff
|
tree
2011-06-07
Jonathan
"
D
u
ke"
.
.
.
A
dd org
a
ni
s
m and
f
e
atu
r
e
s
earch ta
b
s
commit
|
commitdiff
|
tree
2011-06-07
Jona
t
han "Duke"
.
.
.
Make
the
o
ld
glossary
s
earc
h
.
pl
redir
e
ct to
the new
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jona
t
han "Duke"
.
.
.
Add glossar
y
search to the new
c
atalys
t
sear
c
h controller
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke"
.
.
.
Add lots of integration t
e
sts
f
or var
i
o
u
s SGN
searches
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke
"
.
.
.
Fix
p
henotype
s
ear
c
h action and add tests
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Du
k
e"
.
.
.
fix the template_experimen
t
_pl
a
tform search act
i
on
commit
|
commitdiff
|
tree
2011-06-07
Jonat
h
a
n "Duke"
.
.
.
Impr
o
ve tests and add se
a
rch al
i
a
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "
D
uke"
.
.
.
F
ix a bug with search con
t
r
o
ller args and add
lots
.
.
.
commit
|
commitdiff
|
tree
2011-06-07
Jon
a
tha
n
"Duke"
.
.
.
Make the
s
e
arc
h
contro
l
l
er
use the new URL scheme
commit
|
commitdiff
|
tree
2011-06-07
Jon
a
than
"
Duke"
.
.
.
Put search c
o
ntroller te
s
ts in a more reasona
b
le pl
a
ce
commit
|
commitdiff
|
tree
2011-06-07
Jonathan "Duke"
.
.
.
U
p
date POD and test to
remove remnants of D
i
r
e
ctSearch
commit
|
commitdiff
|
tree
2011-06-02
Jonathan "Du
k
e"
.
.
.
fix est search
commit
|
commitdiff
|
tree
2011-06-02
Jonat
h
an
"
Duke"
.
.
.
Teach
o
ur c
a
t
a
lyst
s
e
a
r
c
h action to
m
atch regardless
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
Jon
a
t
h
an
"
Du
k
e"
.
.
.
For
w
a
rd
t
o a mason component
s
o the autohandler i
s
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
Jonathan "D
u
ke"
.
.
.
Gut the old direct_search
.
pl
and fix u
p
the new search
.
.
.
commit
|
commitdiff
|
tree
2011-06-02
Jonathan "Duke"
.
.
.
Convert c
r
ufty
d
irect
_
s
earch
.
pl to
s
l
i
ght
l
y
l
ess crufty
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonatha
n
"Duke"
.
.
.
G
et
rid of index
.
pl becau
s
e it create
s
an
e
ndless re
d
irect
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jo
n
athan "Du
k
e"
.
.
.
No need fo
r
Cat
a
l
yst
X
::
G
lob
a
lContext
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
gut /sear
c
h/
i
ndex
.
pl and ma
k
e it redirect
to
/
search
commit
|
commitdiff
|
tree
2011-06-01
Jonat
h
an
"
Duke"
.
.
.
Fix said test
s
commit
|
commitdiff
|
tree
2011-06-01
Jonath
a
n "Duke"
.
.
.
A
d
d every
k
ind of s
e
arch to our validati
o
n te
s
ts
commit
|
commitdiff
|
tree
2011-06-01
Jonathan
"
Duke"
.
.
.
Teach direct_search
.
pl h
o
w
to redirect to the
n
ew cont
r
oller
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonathan
"
Duke"
.
.
.
Add mor
e
search tests
commit
|
commitdiff
|
tree
2011-06-01
J
onathan "Duke"
.
.
.
add and rea
r
range some
validation tests
commit
|
commitdiff
|
tree
2011-06-01
Jonatha
n
"Duke"
.
.
.
add some sear
c
h
t
est
s
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duk
e
"
.
.
.
a
d
d a validation test for glossary search
commit
|
commitdiff
|
tree
2011-06-01
J
onathan "Duke"
.
.
.
Me
r
ge bran
c
h 'master' int
o
search_cont
r
oller
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "
D
uke"
.
.
.
Get
r
id of
t
he
m
addening Co
n
fi
g
::General war
n
i
n
gs
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
DirectSearch is now Sear
c
h
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "
D
uke"
.
.
.
s/direct//g
commit
|
commitdiff
|
tree
2011-06-01
Jona
t
han "Duke"
.
.
.
Remov
e
junk
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "Duke"
.
.
.
Mode
r
nize CXG
N
::Search
:
:CannedForms::MarkerSearc
h
commit
|
commitdiff
|
tree
2011-06-01
J
onathan
"
D
uke"
.
.
.
G
e
t
rid of some deps that
will g
o
aw
a
y s
o
on
commit
|
commitdiff
|
tree
2011-06-01
Jon
a
tha
n
"Duke"
.
.
.
Modernize CannedForms and don't use
G
l
o
b
al
C
ontext in
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jonathan "
D
uke"
.
.
.
follow r
b
u
e
l
s++ advice and do a 301 r
e
direct at the
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
Jon
a
than "Duk
e
"
.
.
.
Add the legacy p
a
th of di
r
ect_search
to
t
h
e new co
n
troller
commit
|
commitdiff
|
tree
2011-06-01
Jonathan
"Duke
"
.
.
.
Merge rem
o
te-tracking b
r
a
nch 'or
i
gin
/
to
p
ic/organism_search
.
.
.
commit
|
commitdiff
|
tree
2011-06-01
J
onathan "Duke"
.
.
.
Ad
d
a skeleton di
r
e
c
t
search
catalyst
c
ontroller
commit
|
commitdiff
|
tree
2011-05-25
J
onathan "Duke"
.
.
.
Merge
b
ranch 'topic
/
secr
e
tom'
commit
|
commitdiff
|
tree
2011-05-25
Jon
a
than "Duke"
.
.
.
M
e
r
ge bra
n
c
h 'maste
r
'
in
t
o topic/sec
r
et
o
m
commit
|
commitdiff
|
tree
2011-05-11
Jonathan
"
Duke"
.
.
.
Conv
e
r
t
a
j
ax organism controlle
r
integration tests
.
.
.
commit
|
commitdiff
|
tree
2011-05-11
Jonat
h
an
"
Duke"
.
.
.
Move a
n
example sele
n
i
u
m test to the pro
p
er home
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke
"
.
.
.
Make more
c
vterm a
j
a
x
in
t
eg
r
ation
t
e
sts fail
m
ore gracefully
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "D
u
ke"
.
.
.
Make cvterm ajax
i
nt
e
gration tes
t
s fail more gracefull
y
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
J
onathan
"
Duk
e
"
.
.
.
Re
v
ert "fix test_
a
ll
.
pl hanging if ser
v
er fails to
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duk
e
"
.
.
.
Revert "cle
a
n up server process
if
i
t dies"
commit
|
commitdiff
|
tree
2011-05-06
Jonat
h
an "Du
k
e"
.
.
.
perltidy biosource validation tests
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "Duke"
.
.
.
Don't use SGN_TEST_SERVER in
the biosource valid
a
tion
.
.
.
commit
|
commitdiff
|
tree
2011-05-06
Jonathan "D
u
k
e
"
.
.
.
Mo
d
erni
z
e
the b
l
ast
i
ndex
.
pl
commit
|
commitdiff
|
tree
2011-05-05
J
o
nathan
"
Duke"
.
.
.
A
dd some useful wa
r
nings to t/test_all
.
pl to debug
.
.
.
commit
|
commitdiff
|
tree
2011-05-05
Jonathan
"
Duk
e
"
.
.
.
Sq
u
ash a war
n
ing
i
n the Cview controller
commit
|
commitdiff
|
tree
2011-05-05
Jonat
h
an "Duke"
.
.
.
Squa
s
h a warni
n
g
commit
|
commitdiff
|
tree
2011-05-04
Jonathan "Duk
e
"
.
.
.
C
r
ush some
w
a
rnings
commit
|
commitdiff
|
tree
2011-05-04
Jo
n
athan "Duke"
.
.
.
Squash warnings
commit
|
commitdiff
|
tree
2011-05-04
Jonathan
"
Duk
e
"
.
.
.
M
a
k
e align
_
vie
w
er
.
t tests use SGN:
:
Tes
t
::WWW
:
:
Me
c
han
i
ze
commit
|
commitdiff
|
tree
2011-05-04
Jo
n
at
h
a
n "D
u
ke"
.
.
.
M
ake SGN
:
:Test
:
:
Data qui
e
ter b
y
defa
u
lt
commit
|
commitdiff
|
tree
2011-05-03
Jonathan "D
u
ke"
.
.
.
Fix Content-d
i
sposition
test for SGN::
C
ontroller::
D
o
w
nload
commit
|
commitdiff
|
tree
2011-05-03
Jonat
h
an "Duke"
.
.
.
fix typo in sgn
.
c
o
nf
commit
|
commitdiff
|
tree
2011-05-03
Jonathan
"
Duke"
.
.
.
G
room format
t
inghelper
s
.
t a bit
commit
|
commitdiff
|
tree
2011-05-03
Jon
a
t
h
an
"
D
u
ke"
.
.
.
Prevent
s
ome un
i
nitialized value warnings
commit
|
commitdiff
|
tree
2011-04-26
Jon
a
than "Duke"
.
.
.
Make t/01app
.
t
use Tes
t
::Most (trigger
jitterbug)
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "Duke"
.
.
.
Ti
d
y
up a scr
i
pt to tempt t
h
e Jitterbu
g
gods
commit
|
commitdiff
|
tree
2011-04-26
Jona
t
han "Duke"
.
.
.
Yet anot
h
er triv
i
al change to t
r
igger
J
itterbug
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "
D
uke"
.
.
.
Igno
r
e a fil
e
w
hi
c
h is genera
t
ed by newer
Module::Build
'
s
commit
|
commitdiff
|
tree
2011-04-26
Jo
n
athan "Duke"
.
.
.
Trivial change
t
o
Build
.
P
L
to
trigger j
i
t
t
erbug
commit
|
commitdiff
|
tree
2011-04-26
Jonathan "D
u
ke"
.
.
.
Merge bran
c
h
'
master' i
n
to
topic/secretom
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