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2010-07-15	Duke Leto	Get rid of warnings in insitu/detail/image.pl	commit \| commitdiff \| tree
2010-07-15	Duke Leto	Get rid of various warnings and needless output to...	commit \| commitdiff \| tree
2010-07-14	Duke Leto	Make the controller_Clone_Genomic.t tests more robust	commit \| commitdiff \| tree
2010-07-14	Duke Leto	Merge branch 'master' into vera	commit \| commitdiff \| tree
2010-07-09	Duke Leto	Make ontology annotations work for gene.mas	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Make t/tools/genefamily/search.t smarter about passing...	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Fix a loading order issue with Prototype and jQuery	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Add the appropriate JS libs to gene.mas	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Add warnings to CXGN::Page and CXGN::Scrap	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Move the info_section for SolCyc from locus_display...	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Refactor locus_display.pl and get rid of debug output...	commit \| commitdiff \| tree
2010-07-08	Duke Leto	Add Locus editors to validate_all.t	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Convert include_solcyc_links to Mason	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Add validation tests for locus_display to verify that...	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Convert Locus Ontology annotations to Mason	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Convert Locus ontology annotations to Mason	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Convert include_locus_network to Mason	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Add Locus Ajax handler to validate_all.t	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Convert part of locus_display.pl to Mason	commit \| commitdiff \| tree
2010-07-07	Duke Leto	Reformat SGN::Role::Site::Mason	commit \| commitdiff \| tree
2010-07-02	Duke Leto	Basic skeleton of a Gene mason component for feature.pl	commit \| commitdiff \| tree
2010-07-01	Duke Leto	Add qtl_load.pl to validate_all.t	commit \| commitdiff \| tree
2010-07-01	Duke Leto	Add 'use warnings' to qtl_load.pl	commit \| commitdiff \| tree
2010-06-29	Duke Leto	Merge branch 'feature'	commit \| commitdiff \| tree
2010-06-29	Duke Leto	Add a basic validation test for feature.pl	commit \| commitdiff \| tree
2010-06-28	Duke Leto	Skip the correct number of tests in t/validate/cview...	commit \| commitdiff \| tree
2010-06-28	Duke Leto	Enable a simple test for CXGN::Page::Form::Static	commit \| commitdiff \| tree
2010-06-28	Duke Leto	Refactor print_json in CXGN::Page::Form::AjaxFormPage	commit \| commitdiff \| tree
2010-06-26	Duke Leto	Add a total row to the related feature columnar table	commit \| commitdiff \| tree
2010-06-26	Duke Leto	Only render related features columnar table if a nonzero...	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Refactor a Cview test and get rid of a warning	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Steal pagination_control.mas from topic/organism_search...	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Render related features in a columnar table	commit \| commitdiff \| tree
2010-06-18	Duke Leto	First crack at a function to generate stats about the...	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Add accession and description	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Refactor dbxref rendering	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Add basic rendering of feature_cvterms	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Add file for db migrations needed	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Fix the parents argument to related_features.mas	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Add a mason component for related features	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Refactor sequence rendering to a mason component	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Add a component to render feature links	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Make max in-line sequence length 30 kilobases not kilobytes	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Provide FASTA download link for sequences >30 kilobases	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Fix bug in feature param parsing and add script to...	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Allow searching by feature_id	commit \| commitdiff \| tree
2010-06-18	Duke Leto	wip	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Pass along child and parent features	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Include javascript libs	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Up the version we require of Bio::Chado::Schema in...	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Some features do not have dbxrefs	commit \| commitdiff \| tree
2010-06-18	Robert Buels	added MooseX::Declare as Build.PL dep	commit \| commitdiff \| tree
2010-06-18	Duke Leto	Recreated feature branch from corrupted git repo	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Get rid of some warnings in gene_family_info.mas	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Properly skip some validation tests and make ./Build...	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Make a test file for the QTL analysis page that skips...	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Refactor validation of urls into a module, SGN::Test	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Remove AUTO_URLS feature from validate_all.t, which...	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Clean up validate_all.t some more and remove dead code	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Cleanup t/validate_all.t	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Add blib/* to .gitignore	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Re-enable the use of ./Build test	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Fix the QTL test	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Add a basic test for qtl.pl	commit \| commitdiff \| tree
2010-06-16	Duke Leto	Check for pop_id in qtl.pl and throw an error if not...	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Convert a 2-arg open in SGN::Controller::Clone::Genomic...	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Clean up CXGN::Cview::Chromosome::ITAG, get rid of...	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Convert to a 3-arg open with a better error message...	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Convert 2-arg open to 3-arg in CXGN::Transcript::DrawContigAlign	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Convert 2-arg open's in CXGN::Genefamily to slurp	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Clean up SGN::Image and convert a 2-arg open to 3-arg	commit \| commitdiff \| tree
2010-06-11	Duke Leto	Get rid of 2-arg open in CXGN::Bulk	commit \| commitdiff \| tree
2010-06-10	Duke Leto	Convert a 2-arg open to 3-arg with basic error handling	commit \| commitdiff \| tree
2010-06-10	Duke Leto	Improve muscle binary detection	commit \| commitdiff \| tree
2010-06-09	Duke Leto	Add some more align_viewer tests, which depend on the...	commit \| commitdiff \| tree
2010-06-09	Duke Leto	Replace another instance of open with slurp in align_viewer	commit \| commitdiff \| tree
2010-06-09	Duke Leto	Add a test for the basic alignment example	commit \| commitdiff \| tree
2010-06-09	Duke Leto	Use File::Slurp instead of open()	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Fix a typo in the POD of t/tools/align_viewer.t	commit \| commitdiff \| tree
2010-06-08	Duke Leto	More tests for align_viewer and add Test::Class as...	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Add tests for valid input to align_viewer	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Refactor get_arguments call	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Add basic tests for align_viewer	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Fix incorrect death message in t/bulk.t	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Realign and cleanup validate_all.t	commit \| commitdiff \| tree
2010-06-08	Duke Leto	Fixed link to japan.pl, closes #998	commit \| commitdiff \| tree
2010-05-27	Duke Leto	Only load CXGN.Effects once on the unigene_build detail...	commit \| commitdiff \| tree
2010-05-27	Duke Leto	Only load JS libs once in unigene_detail.mas	commit \| commitdiff \| tree
2010-05-24	Duke Leto	Remove some more useless debug output, but refrain...	commit \| commitdiff \| tree
2010-05-24	Duke Leto	Clean up some of the Bulk modules	commit \| commitdiff \| tree
2010-05-21	Duke Leto	Improve bulk.t and add a test for unigene_convert	commit \| commitdiff \| tree
2010-05-18	Duke Leto	Get rid of dead code and remove print to STDERR	commit \| commitdiff \| tree
2010-05-18	Duke Leto	Revert 6a9a055cc, which accidentally undid a bunch...	commit \| commitdiff \| tree
2010-05-18	Duke Leto	Fix bulk.t	commit \| commitdiff \| tree
2010-05-14	Duke Leto	Add vim swap files to .gitignore	commit \| commitdiff \| tree

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