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implement editing of an existing sequencing info record.
2019-09-09
L
u
kas Mueller
imp
l
emen
t
edi
t
ing
of an
e
x
ist
i
ng sequen
c
ing
i
nfo
r
ecord
.
commit
|
commitdiff
|
tree
2019-09-08
L
u
k
as Mueller
make deletion work
.
commit
|
commitdiff
|
tree
2019-09-05
Luk
a
s Muell
e
r
Merge branch 'ma
s
ter'
i
n
t
o to
p
i
c
/se
q
uenc
e
d_acce
s
sions2
commit
|
commitdiff
|
tree
2019-08-15
Lukas Muell
e
r
twea
k
s
e
quenced accessions
.
commit
|
commitdiff
|
tree
2019-08-05
Lukas Muelle
r
removing duplic
a
t
e file
(is in
mason/genomes/)
commit
|
commitdiff
|
tree
2019-08-05
Lukas Mueller
add
f
ile
s
fo
r
sequenc
e
d ac
c
essions
.
commit
|
commitdiff
|
tree
2019-08-05
Luka
s
M
u
eller
add
te
s
t for sequ
e
nc
i
ng inf
o
ob
j
e
ct
.
commit
|
commitdiff
|
tree
2019-08-03
Lu
k
as
Mueller
f
i
x con
f
lict in St
o
ck
.
pm
commit
|
commitdiff
|
tree
2019-08-03
Lukas Mu
e
ller
factor out
a CXGN
:
:Stock::Seq
u
e
n
cin
g
Info obj
e
ct
.
commit
|
commitdiff
|
tree
2019-07-19
Lukas
Mueller
f
i
x
typo in link
to tobacc
o
d
a
t
a
base
.
commit
|
commitdiff
|
tree
2019-07-19
L
u
kas Mu
e
ller
ad
d
dynamic mason
c
ontrolle
r
.
commit
|
commitdiff
|
tree
2019-07-19
Lu
k
as Mu
e
ller
add solcyc dynamic
mason page
.
commit
|
commitdiff
|
tree
2019-07-19
Lukas Muell
e
r
generate
datata
b
l
e
.
commit
|
commitdiff
|
tree
2019-07-18
Lukas Mueller
add missing so
u
rce entr
y
seq
u
en
c
ed_a
c
cessions
.
js
.
commit
|
commitdiff
|
tree
2019-07-18
Luk
a
s Mue
l
ler
make a
clean
b
r
anch f
o
r sequence
d
a
ccessio
n
s
.
commit
|
commitdiff
|
tree
2019-07-18
Luk
a
s Mueller
tweak t
r
ial designs that still
c
rash
.
commit
|
commitdiff
|
tree
2019-07-16
L
u
kas Mueller
s
tart
i
n
terfacing the mixed mod
e
l
tools wit
h
t
he analysis
.
.
.
commit
|
commitdiff
|
tree
2019-07-09
L
u
k
as Mueller
chang
e
t
h
e name of the
new location
so that th
e
old
.
.
.
commit
|
commitdiff
|
tree
2019-07-09
Lukas Muelle
r
make swap_
s
ample_wells
.
pl compile
.
commit
|
commitdiff
|
tree
2019-07-09
L
u
k
as Muel
l
er
add a
sc
r
ipt to swap samp
l
e wells in genoty
p
ing pl
a
tes
.
commit
|
commitdiff
|
tree
2019-07-05
L
ukas Muell
e
r
t
weak plugin
s
s
o tha
t
they (m
o
s
tly) wor
k
.
commit
|
commitdiff
|
tree
2019-07-05
Lukas M
u
eller
a
l
ways use
standard
objec
t
n
otation when callin
g
functions
.
.
.
commit
|
commitdiff
|
tree
2019-07-04
Lu
k
as Muell
e
r
m
a
ke al
l
t
est
s
pass in CXGN
/
Trial
.
t
.
commit
|
commitdiff
|
tree
2019-07-01
L
u
k
a
s
M
u
elle
r
m
a
ke t
r
ial
accessor accep
t
different flavors of Trial
.
.
.
commit
|
commitdiff
|
tree
2019-06-27
Lukas Muell
e
r
make test wor
k
, partially complete
.
commit
|
commitdiff
|
tree
2019-06-27
Lukas Muel
l
er
move class func
t
ions from Project
.
pm class back to
.
.
.
commit
|
commitdiff
|
tree
2019-06-27
Lukas Mueller
a
d
d
ow
n
er as a pr
o
ject
p
r
o
p
.
commit
|
commitdiff
|
tree
2019-06-11
Lukas Mueller
a
d
d start of Analysi
s
fram
e
w
o
rk
.
commit
|
commitdiff
|
tree
2019-05-25
Lukas Muel
l
er
a
d
d
a
fu
n
ctio
n
that retrie
v
es
all tra
i
l
metadata (fil
e
.
.
.
commit
|
commitdiff
|
tree
2019-05-25
L
u
k
as Mueller
fix confli
c
t in
CXGN::Trial
.
commit
|
commitdiff
|
tree
2019-05-22
L
u
kas Mueller
twe
a
k analysis and
m
ixed model
o
bje
c
t
s
.
commit
|
commitdiff
|
tree
2019-05-17
Lukas Mueller
ad
d
P
OD and
f
ix bu
g
that caused synonyms to b
e
l
oaded
.
.
.
commit
|
commitdiff
|
tree
2019-05-17
L
u
k
a
s
Mueller
fix issue with
b
last
commit
|
commitdiff
|
tree
2019-05-17
Lukas Mueller
workin
g
o
n sto
r
ing analyses,
w
ork in progress
.
commit
|
commitdiff
|
tree
2019-05-10
Lukas Mueller
add
missing CX
G
N
:
:
Phenotype
:
:File class
.
commit
|
commitdiff
|
tree
2019-05-01
Lu
k
as Muelle
r
tweaks
.
commit
|
commitdiff
|
tree
2019-04-21
L
ukas Mueller
refact
o
r st
o
r
e vcf ge
n
oty
p
es to separate metada
t
a sto
r
a
ge
.
.
.
commit
|
commitdiff
|
tree
2019-04-20
Lukas Mueller
mor
e
obje
c
t
s for mi
x
e
d
models
.
commit
|
commitdiff
|
tree
2019-04-18
Luk
a
s Mue
l
ler
ad
d
mi
x
ed mo
d
el
t
oo
l
s t
o
new bran
c
h (excessive co
n
flicts
.
.
.
commit
|
commitdiff
|
tree
2019-04-09
Lukas Mueller
implement genotype de
l
e
tion using
n
d_protocol_
i
d
.
commit
|
commitdiff
|
tree
2019-04-08
Lukas Mue
l
ler
implem
e
nt genotype deletion script
.
Should pr
o
ba
b
ly
.
.
.
commit
|
commitdiff
|
tree
2019-04-05
Lukas Muel
l
er
add genotype deletion script
.
commit
|
commitdiff
|
tree
2019-04-04
Lukas Mueller
tweak
prot
o
col handling
.
commit
|
commitdiff
|
tree
2019-03-22
Lukas
Mueller
r
emove unnecessary co
d
e from parsing
.
commit
|
commitdiff
|
tree
2019-03-22
Lukas Mueller
choose correct plugin
i
n scri
p
t
.
commit
|
commitdiff
|
tree
2019-03-22
Lukas Mueller
an experiment
a
l script that loads trans
p
osed vcf
f
i
l
e
s
.
.
.
commit
|
commitdiff
|
tree
2019-03-20
L
u
kas Mueller
add
a
flexi
b
l
e
controll
e
r for static pages
.
commit
|
commitdiff
|
tree
2019-02-01
Lukas M
u
eller
add POD t
o
CXGN::G
e
notype
.
commit
|
commitdiff
|
tree
2019-02-01
Lu
k
as Mueller
adding a function for c
h
ecking the concorda
n
ce of pa
r
ental
.
.
.
commit
|
commitdiff
|
tree
2019-01-27
Lukas Mueller
add to do in S
t
ock
.
pm
commit
|
commitdiff
|
tree
2018-12-20
Luk
a
s Muel
l
er
fix i
s
s
u
e
with
new locati
o
n ge
o
json format a
n
d
m
e
t
ada
t
a
.
commit
|
commitdiff
|
tree
2018-12-11
Luka
s
Mue
l
ler
fix s
h
ow and
d
ownload lin
k
s for
matc
h
ed BLAST sequence
.
commit
|
commitdiff
|
tree
2018-11-03
L
u
kas
M
ueller
fix confl
i
ct
commit
|
commitdiff
|
tree
2018-11-03
Luka
s
Muel
l
er
blast test d
a
tabase re
i
n
d
exing
.
commit
|
commitdiff
|
tree
2018-11-02
Lukas Muel
l
er
use CXGN:
:
Blast object
i
nstead o
f
outdated
C
XGN
:
:Blast
D
b
.
.
.
commit
|
commitdiff
|
tree
2018-11-02
L
u
kas Muelle
r
read jbrowse_s
r
c
from db
commit
|
commitdiff
|
tree
2018-11-02
Lukas Mueller
add jb
r
o
w
s
e_src colum
n
to Blast
ob
j
e
c
t
.
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mueller
re
n
ame_stocks
.
pl operations
s
h
o
uld
be done on uniq
u
e
na
m
e
.
.
.
commit
|
commitdiff
|
tree
2018-11-01
Luka
s
Mueller
c
o
ntinue if a s
t
ock i
s
not found
.
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mueller
rem
o
v
e
unneeded option -c
commit
|
commitdiff
|
tree
2018-11-01
Lukas Muelle
r
repo
r
t
if a stock
is not found
.
commit
|
commitdiff
|
tree
2018-11-01
Lukas Mu
e
ller
modify rename_stocks
.
p
l
to rename stock un
i
q
uenames
.
.
.
commit
|
commitdiff
|
tree
2018-10-04
Lukas Mueller
remove stderr
m
essages
.
commit
|
commitdiff
|
tree
2018-10-04
Luk
a
s Mueller
fix automati
c
pa
s
swo
r
d
field dat
a
e
n
tr
y
by click
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2018-09-12
Lukas
M
ueller
ignore emac
s
b
a
ckup
files also in db/run_all_patches
.
pl
commit
|
commitdiff
|
tree
2018-09-12
Luk
a
s M
u
eller
ignor
e
dbpatch
e
s t
h
at ar
e
emacs bac
k
u
p files
.
commit
|
commitdiff
|
tree
2018-09-12
Lukas M
u
eller
use postgres passwo
r
d fro
m
config
file for run
n
ing
.
.
.
commit
|
commitdiff
|
tree
2018-08-08
Lukas Muelle
r
db
p
a
t
c
h
for image disp
l
ay or
d
er
.
commit
|
commitdiff
|
tree
2018-08-08
Luk
a
s Mueller
make the order of images
e
d
itable on de
t
ail pages
.
commit
|
commitdiff
|
tree
2018-07-22
Lukas Muel
l
e
r
fix URL form qui
c
k_cr
e
ate_user
.
commit
|
commitdiff
|
tree
2018-07-22
Lu
k
as Mueller
move the
q
uick
create user f
u
nction from cgi to
MVC
.
commit
|
commitdiff
|
tree
2018-07-02
Lukas Muell
e
r
report
c
ount
of de
l
eted images
.
commit
|
commitdiff
|
tree
2018-07-02
Lukas Muel
l
e
r
a script to de
l
ete images
.
commit
|
commitdiff
|
tree
2018-06-26
Lukas Mueller
f
i
x
typo in
l
ocati
o
n
upload form descri
p
tio
n
.
commit
|
commitdiff
|
tree
2018-06-06
Lukas
Mueller
M
ake
S
lurm the
default backend b
y
a
d
ding it to sgn
.
.
.
commit
|
commitdiff
|
tree
2018-05-31
Lukas Mueller
run align
m
ent job locally instead
of on
the c
l
u
s
t
er
.
.
.
commit
|
commitdiff
|
tree
2018-05-25
Lukas M
u
eller
r
e
moving old version of insi
l
icopcr in cgi-bin dir
.
.
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas Muel
l
er
fix
passwor
d
reset li
n
k
.
commit
|
commitdiff
|
tree
2018-05-24
Lukas Mueller
Remove protocol from link, as it sh
o
uld
b
e already
.
.
.
commit
|
commitdiff
|
tree
2018-05-24
Luka
s
Mu
e
ller
fi
x
hostname in email link
.
commit
|
commitdiff
|
tree
2018-05-24
L
u
kas
Mue
l
ler
fix commen
t
e
d
out code
.
commit
|
commitdiff
|
tree
2018-05-23
Lukas
M
ue
l
ler
t
wea
k
cookie popup
.
commit
|
commitdiff
|
tree
2018-05-19
Lu
k
as Mu
e
ll
e
r
start e
d
iting towards B
r
API v1
.
1 compatibilit
y
commit
|
commitdiff
|
tree
2018-05-18
Lu
k
as
Mu
e
l
l
er
c
h
ange pag
e
Size
and c
u
rrentPage parame
t
ers to i
n
t
.
.
.
commit
|
commitdiff
|
tree
2018-05-16
Lukas Mueller
r
emove include intended for other branch for now
.
commit
|
commitdiff
|
tree
2018-05-11
Luk
a
s Mueller
fix
c
on
f
l
ict in site/
f
ooter
.
mas
.
/
commit
|
commitdiff
|
tree
2018-05-10
L
u
kas
M
uell
e
r
Move co
m
mon footer element inc
l
ude into the parent
.
.
.
commit
|
commitdiff
|
tree
2018-05-10
L
ukas Mue
l
ler
Tweak redirect
a
f
ter login p
a
ge
.
commit
|
commitdiff
|
tree
2018-05-09
Lukas Mueller
d
el
e
te old cgi-bin log
i
n scripts
.
commit
|
commitdiff
|
tree
2018-05-08
Lukas
Mueller
remove d
u
pli
c
ated code
.
commit
|
commitdiff
|
tree
2018-05-08
Lukas Mueller
mo
v
e preventDefault() to beginning
o
f function
.
commit
|
commitdiff
|
tree
2018-05-08
Lukas Mu
e
l
l
e
r
remove debuggin
pa
s
sword log
g
ing
.
commit
|
commitdiff
|
tree
2018-05-07
L
u
kas Muelle
r
re
l
oad pages
a
fter login/logout; remove some d
e
bug
.
.
.
commit
|
commitdiff
|
tree
2018-05-07
Lukas
Mu
e
ller
r
emov
e
unused code
.
commit
|
commitdiff
|
tree
2018-05-07
Lukas Muelle
r
h
ave em
a
i
ls sent to main
_
produ
c
tion_
s
ite_u
r
l, not the
.
.
.
commit
|
commitdiff
|
tree
2018-05-06
Lukas Mu
e
ller
tw
e
ak input form for new account
.
commit
|
commitdiff
|
tree
2018-05-06
Luka
s
Mueller
tw
e
ak ac
c
o
unt creatio
n
.
commit
|
commitdiff
|
tree
2018-05-04
Lu
k
as Mue
l
ler
remove un
n
eeded maso
n
component
.
commit
|
commitdiff
|
tree
2018-05-01
Lukas Mueller
fix db patch scrip
t
for encoding
p
asswo
r
ds
.
commit
|
commitdiff
|
tree
2018-04-30
L
u
k
a
s
Mueller
remove debu
g
gi
n
g ale
r
ts
commit
|
commitdiff
|
tree
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