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pom-trakem2-1.4.0
2015-09-03
Stephan
S
aalfel
d
pom-tra
k
em
2
-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Ste
p
h
a
n
Saalfeld
added multi-threading fo
r
c
o
efficient
s
m
a
tching
commit
|
commitdiff
|
tree
2015-09-03
Step
h
an Saalfel
d
p
u
t m
a
tch i
n
tensities
c
ommands into wor
k
e
rs
to b
l
ock
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
Wo
r
king version without multi-thr
e
ading and bureaucra
t
s
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
inclu
d
e
d ma
t
ch intensities p
l
u
g
in, build wit
h
SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Steph
a
n Sa
a
l
feld
M
e
rge pu
l
l
request #11 from hanslovsky/master
commit
|
commitdiff
|
tree
2015-04-07
Stephan S
a
alfeld
next development cycle
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
han Saalfeld
release pom-trake
m
2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
St
e
phan S
a
alfeld
re-release pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalfeld
next developm
e
nt cycle
commit
|
commitdiff
|
tree
2015-03-24
Ste
p
h
an Saalfel
d
re-re
l
eas
e
pom-t
r
ak
e
m2-
1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
S
t
ephan
S
aa
l
fel
d
next
develo
p
ment cycle (prob
l
em with Eclipse Kepler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stepha
n
S
aalfeld
rele
a
se
pom
-
trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Step
h
a
n Sa
a
l
fel
d
ne
x
t
developmen
t
cycle
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfeld
relea
s
e
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saal
f
eld
next dev
e
lop
m
ent cycle
commit
|
commitdiff
|
tree
2015-02-14
Stephan
Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
St
e
p
h
an
S
a
alfeld
r
e
lease
commit
|
commitdiff
|
tree
2015-01-14
Step
h
an Saalfeld
ad
d
ed gette
r
s
f
or mls2 p,
q
, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saa
l
feld
Adde
d
Eric T
r
a
u
tm
a
n
'
s check for n
u
m
ber of
t
hreads
t
o
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Ste
p
h
an
S
aalfel
d
Fixed Value2NoiseFilter max export
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
b
u
m
p
t
o
next
development cycle
commit
|
commitdiff
|
tree
2014-12-19
St
e
phan Saalf
e
ld
Merge remote-tracking branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
reproducible build pom-t
r
a
k
em2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stepha
n
Saalfeld
separate
d
Coord
i
nateT
r
ansform parts o
f
len
s
correc
t
ion
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Saalfel
d
added multiple level downsampling for C
o
l
orPr
o
cessor
commit
|
commitdiff
|
tree
2014-12-17
St
e
phan Saalfeld
b
u
m
p to
ne
x
t devel
o
pment cycle
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
sec
o
n
d try to
make r
e
producible
build p
o
m-trak
e
m2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
teph
a
n
Saalfel
d
Merge br
a
n
ch 'int
e
nsit
y
-transform
'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
bump
to
next de
v
el
o
pme
n
t cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
reproducible build pom-
t
r
akem
2
-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
S
t
e
p
han S
a
alfeld
M
e
rge remot
e
-t
r
acking bra
n
ch 'o
r
igin/maste
r
'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfel
d
bump to
n
ew development cycl
e
commit
|
commitdiff
|
tree
2014-12-12
S
t
eph
a
n Saalfeld
reproducibl
e
buil
d
pom-tra
k
em2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
S
t
epha
n
Saa
l
feld
M
e
rge branch 'master
'
of github
.
com
:
t
rakem2/TrakEM
2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfel
d
a
d
d
ed Va
l
ueToNo
i
se fi
l
t
e
r whi
c
h
f
i
lls a given inte
n
s
i
ty
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
S
t
ephan Sa
a
lfe
l
d
Up
d
at
e
R
EADM
E
commit
|
commitdiff
|
tree
2014-11-12
Ste
p
h
a
n Saalfe
l
d
U
pdate README
commit
|
commitdiff
|
tree
2014-11-07
St
e
phan Saalfeld
Merge branch '
m
a
ster' into coordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Sa
a
l
feld
Merge
r
emote-tracking branch '
o
rigin/in
t
ensity-tran
s
form'
commit
|
commitdiff
|
tree
2014-10-04
Stephan
S
a
a
l
f
eld
added Robust
N
orma
l
izedLocalContr
a
stFil
t
e
r
,
fast
and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
S
t
ephan
S
aalfeld
Chan
g
ed
default
block radiu
s
in NormalizeLocalCon
t
rast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saalf
e
ld
auto-removed
s
ome training wh
i
tespaces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ep
h
a
n
Saalfeld
added
r
un meth
o
d
that doe
s
not n
e
ed a worker for
e
asier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aalfe
l
d
auto-removed
s
ome traili
n
g whi
t
espaces
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saalfeld
parallelize
d
intersection tests for pairOverlapping
T
ile
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
auto-
f
i
nal
i
ze constant properties and parameters i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
threadsafe Ut
i
ls
.
ens
u
re
(
File)
commit
|
commitdiff
|
tree
2014-06-06
St
e
phan Saalfeld
fixed bug in
generation o
f
a
l
phamasks
commit
|
commitdiff
|
tree
2014-06-05
Stepha
n
Saalfeld
externalized Distort
i
onCorrec
t
ion
.
run to
ena
b
le
calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
tephan
S
a
a
lfeld
E
clipse aut
u
-c
o
smetics in Distorti
o
nCorrection
commit
|
commitdiff
|
tree
2014-05-19
St
e
p
h
an Saalfeld
Me
r
ge bran
c
h 'master
'
into intens
i
ty-transfor
m
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
han Saalfeld
use standard wri
t
er for co
o
r
dinatetransf
o
rms
commit
|
commitdiff
|
tree
2014-05-19
Stephan
S
aalfeld
depend
on java
x
.
med
i
a for jai
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n S
a
alfel
d
added metho
d
s
for downsampling more than one level
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saal
f
eld
rep
l
aced plugins
.
config with the Fi
j
i
v
ersion
commit
|
commitdiff
|
tree
2013-09-20
St
e
ph
a
n Saalfeld
Merge b
r
anch 'master' of
s
sh://repo
.
or
.
cz
/
sr
v
/
g
it/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
han
S
aalfeld
Merge branc
h
'
master'
of ssh:/
/
r
epo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an
S
a
al
f
eld
Parallel
p
a
irOverlappingTiles did not work and report
e
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n Saalfel
d
Merg
e
branc
h
'master' of ssh://repo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Step
h
an Saa
l
feld
r
e-added
l
eg
a
cy optimizer
for sp
r
ing meshes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
teph
a
n Saalfeld
T2-N
I
T
/
pom
.
x
ml can inherit
version nu
m
ber
from paren
t
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added m
i
s
sing dep
e
nd
e
ncies to
j
ava3
d
core-util
s
and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
e
phan S
a
a
lfeld
se
t
p
a
rent pom of pom-trakem2 to
pom-
f
i
ji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
Merge branch
'spring-mesh2' of ssh://rep
o
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
te
p
han
Saalfeld
Merg
e
branch 'master' into s
p
rin
g
-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
r
a
i
sed m
p
icbg depe
n
dency version to 0
.
6
.
1-
S
NAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
l
f
e
l
d
raise
d
dependency to Simpl
e
_Neurit
e
_Tracer t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saal
f
eld
Me
r
g
e
b
r
a
n
ch 'maste
r
'
into spring-
m
e
s
h2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
adde
d
co
m
ments
an
d
auto-f
i
nalize in DistortionCo
r
rection/NLT
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfel
d
a
d
de
d
mpi
c
bg
.
ve
r
sion as maven pro
p
erty,
commit
|
commitdiff
|
tree
2013-05-06
S
t
ephan
S
aalfeld
t
ra
c
k mo
v
e of the imglib
1
dependency
commit
|
commitdiff
|
tree
2013-04-22
S
t
eph
a
n Sa
a
lfeld
Merge b
r
anch
'mast
e
r' into spring-me
s
h2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
Saalfeld
Merge branch 'master' into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Ste
p
han Saalfeld
use a
r
r
aylist where arr
a
ylists
are
r
eturned
commit
|
commitdiff
|
tree
2013-01-16
S
tephan Saalfeld
adjust
m
p
icbg spring-
m
e
s
h2
w
hich needs less d
a
mping
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saalfeld
Fixed bu
g
in
P
a
tch
.
getFullC
o
ordinate
T
r
ansform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan
Saalfel
d
Changed fixedP
a
tches/Til
e
s
input co
l
lect
i
o
n
to
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair constructor has to be public
commit
|
commitdiff
|
tree
2013-01-10
St
e
phan Saalfeld
f
orgot
to set isAlig
n
ed flag
in
e
lastic
layer alig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Steph
a
n Saalfe
l
d
el
a
stic montage pa
r
am must
be
p
u
b
lic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Sa
a
lfeld
ad
d
ed P
a
tch
.
g
etFullCord
i
nateTransform() which generates
a
commit
|
commitdiff
|
tree
2013-01-07
Steph
a
n Saalfeld
* removed is
A
l
igned from Abstract Param
class
commit
|
commitdiff
|
tree
2013-01-05
S
t
ephan Saalfeld
877: it is legal
f
or layerThi
n
g
t
o
be null
commit
|
commitdiff
|
tree
2012-12-21
S
t
ephan Saalfeld
C
orrected several lon
g
-standing
issues
wi
t
h S
I
FT-linear an
d
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
R
egularize
d
LayerAlignment got more flexi
b
le API met
h
ods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfel
d
c
l
e
aring cache in layer alignment must be defau
l
t true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
print op
t
imizer
r
esults and do not pr
i
nt "
m
atc
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
d
o
not remove empty layers
i
n layer alignment
commit
|
commitdiff
|
tree
2012-11-07
S
t
ephan Sa
a
lfeld
fixe
d
versio
n
n
umber of
m
pic
b
g dependency
commit
|
commitdiff
|
tree
2012-11-07
S
t
ephan
S
aalfeld
f
ixed merge error: moved Robust
N
o
rm
a
lizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Step
h
a
n
Saalfeld
mul
t
i
-
t
h
rea
d
ed R
o
bustNorma
l
ize
L
ocalC
o
ntr
a
st main b
o
dy
commit
|
commitdiff
|
tree
2012-09-01
St
e
pha
n
S
aalfeld
R
e
moved Dis
p
layCanvas
.
setDrawingCol
o
r(in
t
,int,
b
oolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
tephan Saalf
e
ld
Merge branc
h
'master' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Sa
a
lfeld
adde
d
experi
m
enta
l
local
contrast enhancer
RobustNormaliz
e
Lo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
tephan Saalf
e
ld
removed obsole
t
e
choice fr
o
m align layers
d
ialog
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfel
d
split e
l
astic mont
a
ge dialo
g
for b
l
ock matching
and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Sa
a
l
f
e
ld
Me
r
ge b
r
an
c
h 'mas
t
er' of ssh:/
/
r
e
po
.
o
r
.
cz/srv/git/
t
rak
e
m2
commit
|
commitdiff
|
tree
2012-06-26
Stephan S
a
alfeld
use and do not ign
o
re alpha in he
l
per m
e
thod
commit
|
commitdiff
|
tree
2012-06-21
Stepha
n
Saalfeld
use the n
e
w sequential dialogs
i
n "monta
g
e" for a selecti
o
n
.
.
.
commit
|
commitdiff
|
tree
next