repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
next development cycle
2015-03-24
Steph
a
n Saal
f
eld
next development cycle
commit
|
commitdiff
|
tree
2015-03-24
Stepha
n
Saalfeld
re
-
release pom-
t
rakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Step
h
an Saalfeld
ne
x
t
d
e
v
elo
p
ment cycle (
p
rob
l
em with Ecli
p
s
e Kepler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saa
l
f
e
ld
release pom
-
trak
e
m
2
-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saa
l
feld
next
d
e
v
elopmen
t
cyc
l
e
commit
|
commitdiff
|
tree
2015-03-07
S
t
ephan
S
aalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
S
tep
h
an Saalf
e
ld
n
ext development c
y
cle
commit
|
commitdiff
|
tree
2015-02-14
S
t
e
phan Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
Ste
p
han Saalfeld
rele
a
se
commit
|
commitdiff
|
tree
2015-01-14
Stephan Saalfeld
ad
d
e
d
getters
for mls2 p,
q
, and w
commit
|
commitdiff
|
tree
2015-01-12
Ste
p
han
Saalfeld
Added Er
i
c Tr
a
utman's chec
k
for nu
m
ber
of
thread
s
to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
Fixe
d
Value2NoiseFil
t
e
r
max export
commit
|
commitdiff
|
tree
2014-12-19
S
tephan Saalfeld
bump t
o
next developme
n
t
c
y
cle
commit
|
commitdiff
|
tree
2014-12-19
St
e
phan Saalfeld
Me
r
ge remote
-
tracking branch 'ori
g
in'
commit
|
commitdiff
|
tree
2014-12-19
Steph
a
n
Saalfe
l
d
r
e
producible build pom-tr
a
kem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
S
t
ephan Saalfeld
s
epar
a
ted Coord
i
nat
e
Tr
a
ns
f
orm pa
r
t
s
of
l
enscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
St
e
phan Saa
l
f
el
d
added multipl
e
level downsampling for
C
olorProce
s
so
r
commit
|
commitdiff
|
tree
2014-12-17
St
e
p
han Saalfel
d
bump to next de
v
elopment cycl
e
commit
|
commitdiff
|
tree
2014-12-17
S
t
ephan
S
aalfeld
second try to make r
e
p
r
o
ducible build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
t
e
phan
S
a
alfeld
Merge branch 'intensit
y
-transform
'
commit
|
commitdiff
|
tree
2014-12-13
Ste
p
h
an Saalfeld
bump to n
e
xt developme
n
t
cycle
commit
|
commitdiff
|
tree
2014-12-13
S
t
ephan S
a
alfeld
r
eproducible build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan Saalfe
l
d
Mer
g
e remote-tr
a
c
king b
r
a
n
ch 'ori
g
i
n
/master'
commit
|
commitdiff
|
tree
2014-12-12
St
e
p
h
an Saa
l
feld
bu
m
p to
n
e
w de
v
elopment cycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan
S
aalfe
l
d
reprodu
c
ible
b
uild pom-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
Merg
e
b
r
anch 'maste
r
' of github
.
com:trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
S
t
ep
h
an
Saalfeld
a
dded ValueT
o
Noise f
i
lt
e
r which fills a given intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Step
h
an Saalf
e
ld
Update R
E
AD
M
E
commit
|
commitdiff
|
tree
2014-11-12
S
tephan S
a
alfel
d
Upd
a
te
R
EADME
commit
|
commitdiff
|
tree
2014-11-07
Step
h
a
n
Saalfeld
M
e
rge branch '
m
a
st
e
r' int
o
coor
d
XfmFi
x
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
h
an Saal
f
eld
Merge
r
em
o
t
e
-tracking bran
c
h
'origin/intensity-transform'
commit
|
commitdiff
|
tree
2014-10-04
S
tephan Saalf
e
ld
add
e
d Robust
N
o
rma
l
ize
d
L
o
ca
l
Contra
s
tFilter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Sa
a
lfeld
Cha
n
ged default block radius in N
o
rmalizeLocalCo
n
trast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saa
l
fel
d
aut
o
-removed some trai
n
in
g
whitespac
e
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
added run method t
h
at do
e
s not need a wo
r
k
e
r for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an Saalfeld
a
u
to-removed some t
r
ailing white
s
paces
commit
|
commitdiff
|
tree
2014-10-02
St
e
pha
n
Saalfeld
paralle
l
ized intersection tests for
p
airOverl
a
p
p
ingTiles
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saalfeld
a
u
to-finalize con
s
tant
propertie
s
and pa
r
ameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
thread
s
a
f
e Utils
.
ensu
r
e(Fi
l
e)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saalfe
l
d
f
ixed bug in generation of alphamasks
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saa
l
fel
d
exter
n
alized Distortion
C
orrection
.
run to enabl
e
c
alling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saalfeld
Eclip
s
e aut
u
-cos
m
e
t
ics i
n
Distor
t
ionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stepha
n
Saalf
e
ld
Merge branch 'master' i
n
to in
t
ensity-transform
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Saa
l
feld
use
s
tand
a
rd
w
riter for coordinatetransforms
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n Saalfeld
depend
o
n ja
v
ax
.
media for j
a
i
commit
|
commitdiff
|
tree
2014-05-19
S
tep
h
an Saalfeld
added methods for downsa
m
pling mo
r
e than one level
commit
|
commitdiff
|
tree
2013-10-10
Stepha
n
Saalfeld
replac
e
d
p
lugi
n
s
.
config with the
Fiji ve
r
sion
commit
|
commitdiff
|
tree
2013-09-20
Stepha
n
Saalfeld
M
e
rge b
r
anch '
m
aster' o
f
ss
h
://repo
.
or
.
cz/sr
v
/
git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
M
erge branch 'master'
of ssh://repo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Sa
a
lfeld
Parallel p
a
i
r
O
v
erl
a
ppin
g
Tiles d
i
d not work
an
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
Merge
branch 'master' o
f
s
s
h://r
e
po
.
o
r
.
c
z/srv/git/
t
r
akem2
commit
|
commitdiff
|
tree
2013-09-16
Step
h
a
n Saalfeld
r
e-ad
d
ed legacy
optimizer for spring meshes, this woul
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalf
e
ld
T2-NIT/pom
.
x
m
l
can inherit version
n
umber from par
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
add
e
d
m
issing d
e
pen
d
encies to
ja
v
a3d c
o
re-ut
i
l
s an
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
teph
a
n Saalfeld
se
t
paren
t
pom of pom-trakem2 to pom-fiji
.
2
.
0
.
0-SNAPSHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
ld
Merge branch 'spring-mesh2' of ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
h
a
n Saal
f
eld
Merge branc
h
'maste
r
'
i
n
t
o
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfeld
r
a
ised mpic
b
g dependency ve
r
s
i
on to 0
.
6
.
1-S
N
A
P
S
HOT
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saalfe
l
d
raised dependency to
Simp
l
e_Ne
u
ri
t
e_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfeld
Merge br
a
nch 'master' i
n
t
o spring-mes
h
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalf
e
l
d
added comments and auto-finalize in DistortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
S
tep
h
an
S
aalfeld
added mpicb
g
.
version as maven property
,
commit
|
commitdiff
|
tree
2013-05-06
St
e
phan
Saalfel
d
track move of
t
he im
g
lib1
d
ep
e
ndency
commit
|
commitdiff
|
tree
2013-04-22
Stephan
Saalfeld
M
e
r
g
e
b
ranch
'ma
s
ter' into sp
r
in
g
-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan
Saal
f
el
d
Merge branch 'master
'
into sp
r
ing-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stepha
n
Saal
f
e
l
d
use arraylist where arr
a
yl
i
sts are
r
eturned
commit
|
commitdiff
|
tree
2013-01-16
Stephan
Saalfeld
adjust mpi
c
b
g
spring
-
m
e
sh
2
which needs le
s
s damping
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixe
d
bug in P
a
tch
.
getFullCoordi
n
ateTrans
f
o
r
m that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
S
aa
l
feld
Ch
a
nged fixedPatches/Tiles
i
nput collection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalf
e
ld
P
air constructor has to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan
Saalfeld
fo
r
got to
s
et isAl
i
gned
f
lag in
elastic
layer alignmen
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
epha
n
Saal
f
eld
elas
t
ic montage param
m
ust be
public
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saal
f
eld
added Patch
.
get
F
ullCordinate
T
ransform(
)
w
hich generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* removed isAligned from Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877:
it
is l
e
g
a
l for layerThing to
b
e null
commit
|
commitdiff
|
tree
2012-12-21
S
t
ephan
S
aalfeld
C
o
rrecte
d
s
e
veral l
o
ng-standing i
s
sues
w
ith SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
aalfel
d
Regu
l
ar
i
zedL
a
y
erAl
i
g
n
ment
g
ot more flexible API me
t
hods and
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saal
f
e
l
d
clearing
c
ache in layer alignme
n
t m
u
st be defau
l
t true
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an Saalf
e
ld
pr
i
nt optimizer
results
and do not print "ma
t
c
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saal
f
eld
d
o
n
ot remove e
m
pty lay
e
rs in
layer
alignment
commit
|
commitdiff
|
tree
2012-11-07
Step
h
an
Saalfeld
f
i
x
ed version number
of mpicb
g
dependenc
y
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed
m
e
r
ge
error: m
o
ved Robust
N
o
r
m
alize
L
oca
l
C
ont
r
ast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
te
p
h
an S
a
alfeld
m
ulti-th
r
ea
d
ed RobustNorm
a
lizeLo
c
a
lContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Ste
p
han Saalfeld
R
emoved DisplayCa
n
vas
.
setDr
a
wingColor(int,in
t
,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saal
f
eld
Merge branch 'mas
t
er' of s
s
h://
r
epo
.
or
.
c
z
/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Steph
a
n Saalfeld
added expe
r
imenta
l
local contrast enhan
c
er RobustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
t
ephan Saalfeld
r
emove
d
ob
s
olete choice from align layers
d
i
a
l
og
commit
|
commitdiff
|
tree
2012-06-26
Stephan S
a
alfeld
split e
l
astic montage dialog for blo
c
k match
i
ng
and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
S
aalfe
l
d
Merge bra
n
ch 'ma
s
ter' of ssh
:
//r
e
po
.
or
.
cz/srv/g
i
t/tra
k
e
m2
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
S
a
alfeld
use and do not ignore alpha in he
l
p
er m
e
thod
commit
|
commitdiff
|
tree
2012-06-21
S
tephan
S
aalf
e
ld
u
s
e the new sequential di
a
logs in "monta
g
e
" for a
se
l
ection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfel
d
Merge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Ste
p
han Saalfeld
f
i
xe
d
range ch
e
ck
i
n layer alig
n
m
e
nt
commit
|
commitdiff
|
tree
2012-06-14
Step
h
an Saalfel
d
f
i
xed c
o
nditi
o
n
check in Alig
n
Layers for re
g
ular
i
z
ation
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
S
t
e
phan Saalfeld
Merge
branch 'mas
t
er' into
regularized-af
f
in
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do n
o
t consider
disconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aa
l
feld
Merge b
r
anch
'
regularized-affine' of s
s
h
://repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-
a
lign
graphs and match only overlap
p
ing ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Saalfe
l
d
pr
e
-align g
r
aphs
a
nd match only over
l
apping ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saal
f
eld
initiali
z
e Tile mode
l
s and not onl
y
patches in alignGraphs
commit
|
commitdiff
|
tree
next