.gitignore

   1 # Test directory
   2 test/*.wig
   3 test/*.bed
   4 test/log
   5 test/*_run_*
   6 test/subcommandstest_run_*
   7 test/__pycache__
   8 test/*.prof
   9 test/*.tottime
  10 test/*.calls
  11 test/*.cumulative
  12 test/speedtest*
  13 test/macs2*
  14 temp/
  15 other_test/
  16
  17 # cython files
  18 MACS3/IO/BedGraphIO.c
  19 MACS3/IO/Parser.c
  20 MACS3/IO/PeakIO.c
  21 MACS3/Signal/BedGraph.c
  22 MACS3/Signal/CallPeakUnit.c
  23 MACS3/Signal/FixWidthTrack.c
  24 MACS3/Signal/HMMR_EM.c
  25 MACS3/Signal/HMMR_HMM.c
  26 MACS3/Signal/HMMR_Signal_Processing.c
  27 MACS3/Signal/PairedEndTrack.c
  28 MACS3/Signal/PeakDetect.c
  29 MACS3/Signal/PeakModel.c
  30 MACS3/Signal/Pileup.c
  31 MACS3/Signal/Prob.c
  32 MACS3/Signal/RACollection.c
  33 MACS3/Signal/ReadAlignment.c
  34 MACS3/Signal/Region.c
  35 MACS3/Signal/ScoreTrack.c
  36 MACS3/Signal/Signal.c
  37 MACS3/Signal/SignalProcessing.c
  38 MACS3/Signal/UnitigRACollection.c
  39 MACS3/Signal/VariantStat.c
  40
  41 # MacOSX temp
  42 .DS_Store
  43
  44 # EMACS bk and temp file
  45 *~
  46 \#*\#
  47
  48 # Byte-compiled / optimized / DLL files
  49 __pycache__/
  50 *.py[cod]
  51 *$py.class
  52 *.pyc
  53 .pydevproject
  54 .project
  55
  56 # C extensions
  57 *.so
  58
  59 # Distribution / packaging
  60 .Python
  61 build/
  62 develop-eggs/
  63 bld-dir/
  64 dist/
  65 downloads/
  66 eggs/
  67 .eggs/
  68 parts/
  69 sdist/
  70 var/
  71 wheels/
  72 *.egg-info/
  73 .installed.cfg
  74 *.egg
  75 MANIFEST
  76
  77 # PyInstaller
  78 #  Usually these files are written by a python script from a template
  79 #  before PyInstaller builds the exe, so as to inject date/other infos into it.
  80 *.manifest
  81 *.spec
  82
  83 # Installer logs
  84 pip-log.txt
  85 pip-delete-this-directory.txt
  86
  87 # Unit test / coverage reports
  88 htmlcov/
  89 .tox/
  90 .coverage
  91 .coverage.*
  92 .cache
  93 nosetests.xml
  94 coverage.xml
  95 *.cover
  96 .hypothesis/
  97 .pytest_cache/
  98
  99 # Translations
 100 *.mo
 101 *.pot
 102
 103 # Django stuff:
 104 *.log
 105 local_settings.py
 106 db.sqlite3
 107
 108 # Flask stuff:
 109 instance/
 110 .webassets-cache
 111
 112 # Scrapy stuff:
 113 .scrapy
 114
 115 # Sphinx documentation
 116 docs/_build/
 117
 118 # PyBuilder
 119 target/
 120
 121 # Jupyter Notebook
 122 .ipynb_checkpoints
 123
 124 # pyenv
 125 .python-version
 126
 127 # celery beat schedule file
 128 celerybeat-schedule
 129
 130 # SageMath parsed files
 131 *.sage.py
 132
 133 # Environments
 134 .env
 135 .venv
 136 env/
 137 venv/
 138 ENV/
 139 env.bak/
 140 venv.bak/
 141
 142 # Spyder project settings
 143 .spyderproject
 144 .spyproject
 145
 146 # Rope project settings
 147 .ropeproject
 148
 149 # mkdocs documentation
 150 /site
 151
 152 # mypy
 153 .mypy_cache/