pkgs/applications/science/biology/sumatools/default.nix

   1 { lib, gccStdenv, fetchFromGitLab, zlib }:
   2
   3 let
   4   stdenv = gccStdenv;
   5   meta = with lib; {
   6     description = "Fast and exact comparison and clustering of sequences";
   7     homepage = "https://metabarcoding.org/sumatra";
   8     maintainers = [ maintainers.bzizou ];
   9     platforms = platforms.unix;
  10   };
  11
  12 in rec {
  13
  14   # Suma library
  15   sumalibs = stdenv.mkDerivation rec {
  16     version = "1.0.34";
  17     pname = "sumalibs";
  18     src = fetchFromGitLab {
  19       domain = "git.metabarcoding.org";
  20       owner = "obitools";
  21       repo = pname;
  22       rev = "sumalib_v${version}";
  23       sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a";
  24     };
  25     makeFlags = [ "PREFIX=$(out)" ];
  26     inherit meta;
  27   };
  28
  29   # Sumatra
  30   sumatra = stdenv.mkDerivation rec {
  31     version = "1.0.34";
  32     pname = "sumatra";
  33     src = fetchFromGitLab {
  34       domain = "git.metabarcoding.org";
  35       owner = "obitools";
  36       repo = pname;
  37       rev = "${pname}_v${version}";
  38       sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6";
  39     };
  40     buildInputs = [ sumalibs zlib ];
  41     makeFlags = [
  42       "LIBSUMA=${sumalibs}/lib/libsuma.a"
  43       "LIBSUMAPATH=-L${sumalibs}"
  44       "PREFIX=$(out)"
  45     ];
  46     inherit meta;
  47   };
  48
  49   # Sumaclust
  50   sumaclust = stdenv.mkDerivation rec {
  51     version = "1.0.34";
  52     pname = "sumaclust";
  53     src = fetchFromGitLab {
  54       domain = "git.metabarcoding.org";
  55       owner = "obitools";
  56       repo = pname;
  57       rev = "${pname}_v${version}";
  58       sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds";
  59     };
  60     buildInputs = [ sumalibs ];
  61     makeFlags = [
  62       "LIBSUMA=${sumalibs}/lib/libsuma.a"
  63       "LIBSUMAPATH=-L${sumalibs}"
  64       "PREFIX=$(out)"
  65     ];
  66     inherit meta;
  67   };
  68 }