pkgs/development/python-modules/deid/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   pythonOlder,
   6   pytestCheckHook,
   7   matplotlib,
   8   pydicom,
   9   python-dateutil,
  10   setuptools,
  11 }:
  12
  13 let
  14   deid-data = buildPythonPackage rec {
  15     pname = "deid-data";
  16     version = "unstable-2022-12-06";
  17     format = "pyproject";
  18     disabled = pythonOlder "3.7";
  19
  20     nativeBuildInputs = [ setuptools ];
  21     propagatedBuildInputs = [ pydicom ];
  22
  23     src = fetchFromGitHub {
  24       owner = "pydicom";
  25       repo = "deid-data";
  26       rev = "5750d25a5048fba429b857c16bf48b0139759644";
  27       hash = "sha256-c8NBAN53NyF9dPB7txqYtM0ac0Y+Ch06fMA1LrIUkbc=";
  28     };
  29
  30     meta = {
  31       description = "Supplementary data for deid package";
  32       homepage = "https://github.com/pydicom/deid-data";
  33       license = lib.licenses.mit;
  34       maintainers = [ lib.maintainers.bcdarwin ];
  35     };
  36   };
  37 in
  38 buildPythonPackage rec {
  39   pname = "deid";
  40   version = "0.3.22";
  41
  42   format = "pyproject";
  43   disabled = pythonOlder "3.7";
  44
  45   # Pypi version has no tests
  46   src = fetchFromGitHub {
  47     owner = "pydicom";
  48     repo = pname;
  49     # the github repo does not contain Pypi version tags:
  50     rev = "40dc96125daeb65856d643e12c3d6dfec756be0d";
  51     hash = "sha256-OtxQPF29eqt8I1Q12ga8a1IjBVO+VBk6y0DQmRtCNoU=";
  52   };
  53
  54   propagatedBuildInputs = [
  55     matplotlib
  56     pydicom
  57     python-dateutil
  58   ];
  59
  60   nativeCheckInputs = [
  61     deid-data
  62     pytestCheckHook
  63   ];
  64
  65   pythonImportsCheck = [ "deid" ];
  66
  67   meta = with lib; {
  68     description = "Best-effort anonymization for medical images";
  69     mainProgram = "deid";
  70     homepage = "https://pydicom.github.io/deid";
  71     license = licenses.mit;
  72     maintainers = with maintainers; [ bcdarwin ];
  73   };
  74 }