pkgs/development/python-modules/stytra/default.nix

   1 { lib
   2 , anytree
   3 , arrayqueues
   4 , av
   5 , buildPythonPackage
   6 , colorspacious
   7 , fetchPypi
   8 , flammkuchen
   9 , git
  10 , gitpython
  11 , imageio
  12 , imageio-ffmpeg
  13 , lightparam
  14 , matplotlib
  15 , nose
  16 , numba
  17 , numpy
  18 , opencv4
  19 , pandas
  20 , pims
  21 , pyqt5
  22 , pyqtgraph
  23 , pyserial
  24 , pytestCheckHook
  25 , pythonOlder
  26 , qdarkstyle
  27 , qimage2ndarray
  28 , scikit-image
  29 , scipy
  30 , tables
  31 }:
  32
  33 buildPythonPackage rec {
  34   pname = "stytra";
  35   version = "0.8.34";
  36   pyproject = true;
  37   disabled = pythonOlder "3.7";
  38
  39   src = fetchPypi {
  40     inherit pname version;
  41     sha256 = "aab9d07575ef599a9c0ae505656e3c03ec753462df3c15742f1f768f2b578f0a";
  42   };
  43
  44   patches = [
  45     # https://github.com/portugueslab/stytra/issues/87
  46     ./0000-workaround-pyqtgraph.patch
  47   ];
  48
  49   propagatedBuildInputs = [
  50     opencv4
  51     pyqt5
  52     pyqtgraph
  53     numpy
  54     scipy
  55     numba
  56     pandas
  57     tables
  58     git
  59     scikit-image
  60     matplotlib
  61     qdarkstyle
  62     gitpython
  63     anytree
  64     qimage2ndarray
  65     flammkuchen
  66     pims
  67     colorspacious
  68     lightparam
  69     imageio
  70     imageio-ffmpeg
  71     arrayqueues
  72     av
  73   ];
  74
  75   nativeCheckInputs = [
  76     nose
  77     pytestCheckHook
  78     pyserial
  79   ];
  80
  81   disabledTestPaths = [
  82     # Crashes python
  83     "stytra/tests/test_z_experiments.py"
  84   ];
  85
  86   meta = with lib; {
  87     description = "A modular package to control stimulation and track behaviour";
  88     homepage = "https://github.com/portugueslab/stytra";
  89     license = licenses.gpl3Plus;
  90     maintainers = with maintainers; [ tbenst ];
  91     broken = true;  # incompatible with pyqtgraph>0.13.0: https://github.com/portugueslab/stytra/issues/87
  92   };
  93 }