bin/generate_cview_release.sh

   1 #!/bin/bash
   2
   3 VERSION=`perl -e 'use CXGN::Cview; print $CXGN::Cview::VERSION; ' `;
   4
   5 echo "Generating the distribution for cview version $VERSION.";
   6
   7 LIB_ROOT=/sgn_website/perllib/
   8 CGI_ROOT=/sgn_website/sgn/
   9 RELEASEDIR=cview_release
  10
  11 echo "Removing old files...";
  12 rm -Rf $RELEASEDIR;
  13
  14 # generating target directories
  15 echo "Generating the target directories..."
  16 mkdir $RELEASEDIR;
  17 mkdir $RELEASEDIR/CXGN;
  18 mkdir $RELEASEDIR/cgi-bin/
  19
  20 echo "Export the svn repository...";
  21
  22 svn export $LIB_ROOT/CXGN/Cview $RELEASEDIR/CXGN/Cview
  23 cp -v $LIB_ROOT/CXGN/Cview.pm $RELEASEDIR/CXGN
  24 cp -v $LIB_ROOT/CXGN/Version.pm $RELEASEDIR/CXGN
  25 cp -v $LIB_ROOT/CXGN/Login.pm $RELEASEDIR/CXGN
  26 svn export $LIB_ROOT/CXGN/Page $RELEASEDIR/CXGN/Page
  27 cp -v $LIB_ROOT/CXGN/Page.pm $RELEASEDIR/CXGN
  28
  29 svn export $LIB_ROOT/CXGN/Map $RELEASEDIR/CXGN/Map
  30 svn export $LIB_ROOT/CXGN/Phylo $RELEASEDIR/CXGN/Phylo
  31
  32 svn export $LIB_ROOT/JSAN $RELEASEDIR/JSAN
  33 cp -v $LIB_ROOT/CXGN/JSAN.pm $RELEASEDIR/CXGN
  34 svn export $LIB_ROOT/CXGN/Marker $RELEASEDIR/CXGN/Marker
  35 cp -v $LIB_ROOT/CXGN/Marker.pm $RELEASEDIR/CXGN
  36
  37 svn export $LIB_ROOT/CXGN/VHost $RELEASEDIR/CXGN/VHost
  38 cp -v $LIB_ROOT/CXGN/VHost.pm $RELEASEDIR/CXGN
  39
  40 svn export $LIB_ROOT/CXGN/Garbage $RELEASEDIR/CXGN/Garbage
  41
  42 svn export $LIB_ROOT/CXGN/Configuration $RELEASEDIR/CXGN/Configuration
  43 cp -v $LIB_ROOT/CXGN/Configuration.pm $RELEASEDIR/CXGN/Configuration.pm
  44
  45 cp -v $LIB_ROOT/CXGN/Contact.pm $RELEASEDIR/CXGN/
  46 svn export $LIB_ROOT/CXGN/Accession $RELEASEDIR/CXGN/Accession
  47 cp -v $LIB_ROOT/CXGN/Accession.pm $RELEASEDIR/CXGN/Accession.pm
  48 svn export $LIB_ROOT/CXGN/AJAX $RELEASEDIR/CXGN/AJAX
  49 svn export $LIB_ROOT/CXGN/DB $RELEASEDIR/CXGN/DB
  50 cp $LIB_ROOT/CXGN/Fish.pm $RELEASEDIR/CXGN/Fish.pm
  51
  52 cp $LIB_ROOT/CXGN/Cookie.pm $RELEASEDIR/CXGN
  53 svn export $LIB_ROOT/CXGN/Tools $RELEASEDIR/CXGN/Tools
  54
  55 svn export $LIB_ROOT/CXGN/Apache $RELEASEDIR/CXGN/Apache
  56
  57 svn export $LIB_ROOT/CXGN/Chromatogram $RELEASEDIR/CXGN/Chromatogram
  58 cp $LIB_ROOT/CXGN/Image.pm $RELEASEDIR/CXGN
  59
  60 svn export $LIB_ROOT/CXGN/Genomic $RELEASEDIR/CXGN/Genomic
  61
  62 svn export $LIB_ROOT/CXGN/Chado $RELEASEDIR/CXGN/Chado
  63 svn export $LIB_ROOT/CXGN/People $RELEASEDIR/CXGN/People
  64 cp -v $LIB_ROOT/CXGN/People.pm $RELEASEDIR/CXGN
  65
  66 cp -v $LIB_ROOT/CXGN/Phenome.pm $RELEASEDIR/CXGN
  67 svn export $LIB_ROOT/CXGN/Phenome $RELEASEDIR/CXGN/Phenome
  68
  69 svn export $LIB_ROOT/CXGN/Physical $RELEASEDIR/CXGN/Physical
  70
  71 cp -v $LIB_ROOT/CXGN/LICENSE $RELEASEDIR/CXGN
  72
  73 cp -v $LIB_ROOT/CXGN/Primers.pm $RELEASEDIR/CXGN
  74
  75 svn export $LIB_ROOT/CXGN/Class $RELEASEDIR/CXGN/Class
  76 svn export $LIB_ROOT/CXGN/Error $RELEASEDIR/CXGN/Error
  77 svn export $LIB_ROOT/CXGN/Scrap $RELEASEDIR/CXGN/Scrap
  78 cp $LIB_ROOT/CXGN/Scrap.pm $RELEASEDIR/CXGN
  79
  80 svn export $LIB_ROOT/CXGN/Search $RELEASEDIR/CXGN/Search
  81 svn export $LIB_ROOT/CXGN/Searches $RELEASEDIR/CXGN/Searches
  82 cp -v $LIB_ROOT/CXGN/Tag.pm $RELEASEDIR/CXGN
  83
  84 svn export $LIB_ROOT/CXGN/Transcript $RELEASEDIR/CXGN/Transcript
  85 svn export $LIB_ROOT/CXGN/Unigene $RELEASEDIR/CXGN/Unigene
  86
  87 svn export $LIB_ROOT/CXGN/UserPrefs $RELEASEDIR/CXGN/UserPrefs
  88 cp -v $LIB_ROOT/CXGN/UserPrefs.pm $RELEASEDIR/CXGN
  89
  90 svn export $CGI_ROOT/cgi-bin/cview $RELEASEDIR/cgi-bin/cview/
  91 svn export $CGI_ROOT/cgi-bin/search $RELEASEDIR/cgi-bin/search
  92 svn export $CGI_ROOT/cgi-bin/markers $RELEASEDIR/cgi-bin/markers
  93
  94 echo "Copying the Makefile and other stuff...";
  95
  96 cp files/Makefile.PL $RELEASEDIR/
  97 cp -R files/conf $RELEASEDIR/conf
  98 cp -R files/doc $RELEASEDIR/doc
  99 cp files/post_install.sh $RELEASEDIR/
 100 cp files/README.txt $RELEASEDIR/
 101
 102 echo "tar-ing up the distribution...";
 103 tar cf cview_release.v$VERSION.tar --exclude "*~" --exclude "*Default.HostConf*" --exclude "*Page/SGN.pm" --exclude "*CGN.pm" --exclude "*FGN.pm" "cview_release";
 104
 105 echo "Done."