share/html/online/map.html

   1 <title>map file format</title>
   2 <body>
   3 <h1>map file format</h1>
   4 This file maps matrix data to RGB values which is used by the
   5 <a href="do_dssp.html">do_dssp</a> program.<p>
   6 The format of this file is as follow: first line number of elements
   7 in the colormap. Then for each line: The first character is
   8 a code for the secondary structure type.
   9 Then comes a string for use in the legend of the plot and then the
  10 R (red) G (green) and B (blue) values. <p>
  11 In this case the colors are
  12 (in order of appearance): white, red, black, cyan, yellow, blue,
  13 magenta, orange.
  14 <pre>
  15 8
  16 ~       Coil            1.0       1.0     1.0
  17 E       B-Sheet         1.0       0.0     0.0
  18 B       B-Bridge        0.0       0.0     0.0
  19 S       Bend            0.0       0.8     0.8
  20 T       Turn            1.0       1.0     0.0
  21 H       A-Helix         0.0       0.0     1.0
  22 G       3-Helix         1.0       0.0     1.0
  23 I       5-Helix         1.0       0.6     0.0
  24 </pre>
  25 </body>