documents/getting_started.txt

   1 <div class="subheading">
   2 Portals
   3 </div>
   4 <div class="boxsubcontent">
   5 <a class="creativitylinks" href="/breeders/">Breeder's Toolbox</a><br />
   6 <a href="/outreach/">Outreach</a><br />
   7 </div>
   8 <div class="subheading">
   9 SGN info
  10 </div>
  11 <div class="boxsubcontent">
  12 <a class="creativitylinks" href="/content/sgn_data.pl">SGN data overview</a><br />
  13 <a class="creativitylinks" href="/about/index.pl">More about SGN</a><br />
  14 <a class="creativitylinks" href="/solanaceae-project/index.pl">SOL project</a> <br />
  15 <a class="creativitylinks" href="/solanaceae-project/index.pl#SOL_news">SOL newsletter</a><br />
  16 <a class="creativitylinks" href="/about/tomato_sequencing.pl">International tomato project</a><br />
  17 <a class="creativitylinks" href="/about/ecosol/">The ECO-SOL project</a><br />
  18 <a class="creativitylinks" href="/secretom/">The Secretom project</a><br />
  19 </div>
  20 <div class="subheading">
  21 SOL species
  22 </div>
  23 <div class="boxsubcontent">
  24 <i>Solanaceae</i><br />
  25 <a class="creativitylinks" href="/content/sgn_data.pl#Solanumlycopersicum">Tomato</a> |
  26 <a class="creativitylinks" href="/content/sgn_data.pl#Solanumtuberosum">Potato</a> |
  27 <a class="creativitylinks" href="/content/sgn_data.pl#Capsicumannuum">Pepper</a><br />
  28 <a class="creativitylinks" href="/content/sgn_data.pl#Solanummelongena">Eggplant</a> |
  29 <a class="creativitylinks" href="/content/sgn_data.pl#Petuniahybrida">Petunia</a> |
  30 <a class="creativitylinks" href="/content/sgn_data.pl#Nicotianatabacum">Nicotiana</a><br />
  31
  32 <a class="creativitylinks" href=
  33 "/about/solanum_nomenclature.pl">Solanum nomenclature</a>
  34 <br />
  35 <table cellpadding="0" cellspacing="0">
  36 <tr><td>
  37 <i>Rubiaceae</i><br />
  38 <a class="creativitylinks" href="/content/coffee.pl">Coffee</a><br />
  39 </td>
  40 <td width="10">&nbsp;</td>
  41 <td>
  42 <i>Plantaginaceae</i><br />
  43 <a class="creativitylinks" href="/content/sgn_data.pl#Antirrhinummajus">Snapdragon</a><br />
  44 </td></tr></table>
  45 </div>
  46
  47 <div class="subheading">
  48 Tomato genome
  49 </div>
  50 <div class="boxsubcontent">
  51 <a class="creativitylinks" href="/about/tomato_sequencing.pl">Sequencing progress</a><br />
  52 <a class="creativitylinks" href="/search/direct_search.pl?search=BACs">Search BACs</a><br />
  53 <a class="creativitylinks" href="/maps/physical/overgo_process_explained.pl">Overgo plating process</a><br />
  54 <a class="creativitylinks" href="/gbrowse/">Genome browser</a><br />
  55 <a class="creativitylinks" href="/solanaceae-project/sol-bioinformatics/">SOL bioinformatics resources</a><br />
  56 </div>
  57 <div class="subheading">
  58 Maps and markers
  59 </div>
  60 <div class="boxsubcontent">
  61 <a class="creativitylinks" href="/cview/index.pl">Available maps</a><br />
  62 <a class="creativitylinks" href="/search/direct_search.pl?search=Markers">Search markers</a><br />
  63 More about <a class="creativitylinks" href="markers/microsats.pl">SSR</a> |
  64 <a class="creativitylinks" href="markers/cos_markers.pl">COS</a> |
  65 <a class="creativitylinks" href="markers/cosii_markers.pl">COSII</a><br />
  66 <a class="creativitylinks" href="ftp://ftp.solgenomics.net/COSII/">COSII marker data (FTP)</a><br />
  67 </div>
  68 <div class="subheading">
  69 SOL Loci
  70 </div>
  71 <div class="boxsubcontent">
  72 <a class="creativitylinks" href="/search/direct_search.pl?search=loci">Search Solanaceae loci</a><br />
  73 <a class="creativitylinks" href="/phenome/">Submit locus annotations</a>
  74 </div>
  75 <div class="subheading">
  76 Phenotypes and mutants
  77 </div>
  78 <div class="boxsubcontent">
  79 <a class="creativitylinks" href="/search/direct_search.pl?search=phenotypes">Solanaceae phenotypes search</a><br />
  80 <a class="creativitylinks" href="/phenome/">Submit phenotype information</a><br />
  81 <!-- a class="creativitylinks" href=
  82 "/mutants/mutants_main.pl">Other mutant pages</a -->
  83 </div>
  84 <div class="subheading">
  85 Sequences
  86 </div>
  87 <div class="boxsubcontent">
  88 <a class="creativitylinks" href="/search/direct_search.pl?search=bacs">Search BACs and BAC ends</a><br />
  89 <a class="creativitylinks" href="/search/direct_search.pl?search=EST">Search ESTs</a> |
  90 <a class="creativitylinks" href="/search/direct_search.pl?search=Unigene">Unigenes</a> |
  91 <a class="creativitylinks" href="/search/direct_search.pl?search=Loci">Loci</a>
  92 <!-- a class="creativitylinks" href="/search/library_search.pl?term=">cDNA libraries</a><br /> -->
  93 </div>
  94 <div class="subheading">
  95 Tools
  96 </div>
  97 <div class="boxsubcontent">
  98 <a class="creativitylinks" href="/tools/blast/">BLAST</a> |
  99 <a class="creativitylinks" href="/tools/intron_detection/find_introns.pl">Intronfinder</a><br />
 100 <a class="creativitylinks" href="/tools/align_viewer/">Alignment</a> &amp;&nbsp;
 101 <a class="creativitylinks" href="/tools/tree_browser/">tree browser</a><br />
 102 <a class="creativitylinks" href="/downloads/">Downloads</a> | <a class="creativitylink" href="ftp://ftp.solgenomics.net/">FTP Site</a>
 103 </div>
 104
 105 <div class="subheading">
 106 Order cDNA &amp; BAC clones
 107 </div>
 108 <div class="boxsubcontent">
 109 <a class="creativitylinks" href=
 110 "/help/ordering/index.pl">Ordering page</a>
 111 </div>