mason/page/detail_page_2_col_section.mas

   1 <%args>
   2 $trial_id => undef
   3 $trial_name => undef
   4 $stock_id => undef
   5 $stock_uniquename => undef
   6 $col1_width_class => "col-sm-1"
   7 $col2_width_class => "col-sm-11"
   8 $icon_class => "glyphicon glyphicon-th"
   9 $info_section_collapsible => 1
  10 $info_section_collapsed => 1
  11 $info_section_id => "2col_id"
  12 $info_section_title => "A title"
  13 $info_section_subtitle => "A subtitle"
  14 $buttons_html => undef
  15 $locations_by_program_json => undef
  16
  17 #Specific to trial detail page
  18 $has_plant_entries => undef
  19 $has_subplot_entries => undef
  20 $has_tissue_sample_entries => undef
  21 $has_expression_atlas => undef
  22 $expression_atlas_url => undef
  23 $site_project_name => undef
  24 $sgn_session_id => undef
  25 $user_name => undef
  26 $main_production_site_url => undef
  27 $trial_phenotype_files => undef
  28 $hidap_enabled => undef
  29 $location_name => undef
  30 $country_name => undef
  31 $breeding_program_name => undef
  32 $breeding_program_id => undef
  33 $year => undef
  34 $trial_type => undef
  35 $design_name => undef
  36 $planting_date => undef
  37 $transplanting_date => undef
  38 $harvest_date => undef
  39 $trial_description => undef
  40 $folder_name => undef
  41 $folder_id => undef
  42 $plot_width => undef
  43 $plot_length => undef
  44 $field_size => undef
  45 $field_trial_is_planned_to_be_genotyped => undef
  46 $field_trial_is_planned_to_cross => undef
  47 $identifier_prefix => undef
  48 $genotyping_facility => undef
  49 $management_factor_date => undef
  50 $management_factor_type => undef
  51 $trial_stock_type => undef
  52 $trial_stock_count => undef
  53 $trial_owner => undef
  54 $phenotypes_fully_uploaded => undef
  55 $user_can_modify => undef
  56 $latest_trial_activity => undef
  57 $has_col_and_row_numbers => undef
  58
  59 #Specific to stock detail page
  60 $type_name => undef
  61 $stockref => {}
  62 $stockprops => undef
  63 $edit_privs => undef
  64 $editable_stock_props => undef
  65 $editor_link => undef
  66 $source_dbs => {}
  67 $locus_add_uri => undef
  68 $new_locus_link => undef
  69 $allele_div => undef
  70 $is_owner => undef
  71 $map_html => undef
  72 $has_pedigree => undef
  73 $image_ids => undef
  74 $related_image_ids => undef
  75 $dbh => undef
  76 $trait_ontology_db_name => undef
  77 $pubs => undef
  78 $cvterm_add_uri => undef
  79 $referer => undef
  80
  81 #Specific to genotyping protocol detail page
  82 $protocol_id => undef
  83 $protocol_name => undef
  84 $protocol_description => undef
  85 $marker_names => []
  86 $header_information_lines => []
  87 $reference_genome_name => undef
  88 $species_name => undef
  89 $create_date => undef
  90 $sample_observation_unit_type_name => undef
  91 $marker_type => undef
  92 $genotype_data_type => undef
  93 $marker_info_headers => undef
  94 $assay_type => undef
  95
  96 #Specific to drone run detail page
  97 $drone_run_date => undef
  98 $id_extension => undef
  99
 100 #Specific to analysis detail page
 101 $analysis_metadata => undef
 102 $for_analysis_page => undef
 103 $data_level => undef
 104
 105 $program_id => undef
 106 $program_name => undef
 107
 108 #Specific to analysis model detail page
 109 $model_id => undef
 110 $model_name => undef
 111 $model_description => undef
 112 $model_properties => {}
 113 $model_file_ids => {}
 114 $model_type_name => undef
 115 $model_files => {}
 116
 117 #Specific to manage nirs page
 118 $nirs_files => undef
 119 $deleted_nirs_files => undef
 120 $all_nirs_files => undef
 121 $all_deleted_nirs_files => undef
 122 $locations => undef
 123 $sampling_facilities => ()
 124
 125 #Specific to analytics detail page
 126 $analytics_protocol_id => undef
 127 $analytics_protocol_name => undef
 128 $analytics_protocol_description => undef
 129 $analytics_protocol_type_id => undef
 130 $analytics_protocol_type_name => undef
 131 $analytics_protocol_create_date => undef
 132 $analytics_protocol_properties => {}
 133 $analytics_protocol_result_summary => {}
 134
 135 </%args>
 136
 137 <& /util/import_javascript.mas,
 138    classes => ["jquery", "jqueryui", "thickbox", "CXGN.Page.FormattingHelpers", "jquery.cookie", "CXGN.Stock", "d3.d3v4Min" ],
 139   entries => ["sequenced_accessions"]
 140 &>
 141
 142 <div class="row">
 143     <div class="col-sm-12">
 144         <div class="well">
 145             <div class="row">
 146                 <div class="<% $col1_width_class %>">
 147                     <span style="font-size:3.5em;" class="<% $icon_class %>"></span>
 148                 </div>
 149                 <div class="<% $col2_width_class %>">
 150
 151                     <&| /page/info_section.mas, id => $info_section_id, title => $info_section_title, collapsible=>$info_section_collapsible, collapsed => $info_section_collapsed, subtitle=> $info_section_subtitle &>
 152
 153 % if ($buttons_html){
 154                         <div class="panel panel-default">
 155                             <div class="panel-body">
 156                                 <% $buttons_html %>
 157                             </div>
 158                         </div>
 159 % }
 160
 161                         <div class="panel panel-default">
 162                             <div class="panel-body">
 163
 164 % if ($info_section_id eq 'pheno_heatmap'){
 165                                 <& /breeders_toolbox/trial/phenotype_heatmap.mas, trial_id => $trial_id, data_level => $data_level, has_col_and_row_numbers => $has_col_and_row_numbers &>
 166 % } #End pheno_heatmap
 167 % if ($info_section_id eq 'trial_design_section'){
 168                                 <& /breeders_toolbox/trial/design_section.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name, trial_stock_type => $trial_stock_type &>
 169 % } #End trial_design_section
 170 % if ($info_section_id eq 'trial_detail_traits_assayed'){
 171
 172 % if ($has_expression_atlas) {
 173                                 <& /breeders_toolbox/trial/export_trial_to_expression_atlas.mas, trial_id => $trial_id, trial_name=>$trial_name, expression_atlas_url=>$expression_atlas_url, site_project_name=>$site_project_name, sgn_session_id=>$sgn_session_id, user_name=>$user_name, main_production_site_url=>$main_production_site_url &>
 174 % }
 175
 176                                 <& /breeders_toolbox/trial/phenotype_summary.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 177
 178 % } #End trial_detail_traits_assayed
 179
 180 % if ($info_section_id eq 'trial_raw_data') {
 181    <& /breeders_toolbox/trial/trial_raw_data.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 182 % }
 183
 184
 185 % if ($info_section_id eq 'compute_derived_traits'){
 186                                 <& /breeders_toolbox/trial/derived_trait.mas, trial_id => $trial_id &>
 187 % } #End compute_derived_traits
 188 % if ($info_section_id eq 'trial_upload_files'){
 189                                 <& /breeders_toolbox/trial/files_section.mas, trial_id => $trial_id, trial_phenotype_files => $trial_phenotype_files, trial_stock_type => $trial_stock_type, for_analysis_page => $for_analysis_page &>
 190 % } #End trial_upload_files
 191 % if ($info_section_id eq 'trial_analysis_tools'){
 192
 193
 194                                 <!-- analysis tools on saved measurements -->
 195                                <& /breeders_toolbox/trial/saved_measurement_analysis.mas,
 196                                      trial_id => $trial_id
 197                                 &>
 198                                 <!-- Phenotypic correlation analysis -->
 199                                 <& /solgs/tools/correlation/analysis.mas,
 200                                     corr_pop_id => $trial_id
 201                                 &>
 202
 203                                 <& /solgs/tools/anova/analysis.mas,
 204                                     trial_id => $trial_id
 205                                 &>
 206
 207                                  <!-- Population structure analysis PCA -->
 208                                 <& /solgs/tools/pca/analysis.mas,
 209                                     trial_id => $trial_id
 210                                   &>
 211
 212                                 <!-- Clustering -->
 213                                 <& /solgs/tools/cluster/analysis.mas,
 214                                     trial_id => $trial_id
 215                                   &>
 216
 217                                 <!-- kinship and inbreeding-->
 218                                 <& /solgs/tools/kinship/analysis.mas,
 219                                     trial_id => $trial_id
 220                                 &>
 221
 222
 223                                   <& /tools/heritability/heritability.mas,
 224                                     trial_id => $trial_id
 225                                 &>
 226
 227                                 <& /solgs/population/trait_acronyms.mas,
 228                                   trial_id => $trial_id
 229                               &>
 230
 231 % if ($c->req->base =~ /sweetpotatobase/) {
 232                                 <& /tools/qualityControl/qualityControl.mas,
 233                                     trial_id => $trial_id
 234                                 &>
 235 % }
 236
 237 % if ($hidap_enabled) {
 238                                 <& /hidap/hidap_trial_link.mas, main_production_site_url=>$main_production_site_url, program => $breeding_program_name, folder => $folder_name, trial => $trial_name &>
 239 % }
 240 % } #End trial_analysis_tools
 241 % if ($info_section_id eq 'trial_weather_data'){
 242                                 <& /breeders_toolbox/trial/weather.mas, location => $location_name &>
 243 % } #End trial_weather_data
 244 % if ($info_section_id eq 'trial_jbrowse_data'){
 245                                 <& /breeders_toolbox/trial/jbrowse_instance.mas, trial_id => $trial_id &>
 246 %} #End trial_jbrowse_data
 247 % if ($info_section_id eq 'trial_linkage_section'){
 248                                 <&| /page/info_section.mas, title => 'Field Trial to Field Trial Linkage', id => 'field_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 249                                     <& /breeders_toolbox/trial/field_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => $trial_type, trial_name=>$trial_name &>
 250                                 </&>
 251                                 <&| /page/info_section.mas, title => 'Field Trial to Genotyping Plate Linkage', id => 'genotyping_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 252                                     <& /breeders_toolbox/trial/genotyping_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 253                                 </&>
 254                                 <&| /page/info_section.mas, title => 'Field Trial to Crossing Experiment Linkage', id => 'crossing_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 255                                     <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 256                                 </&>
 257 %} #End trial_linkage_section
 258 % if ($info_section_id eq 'trial_deletion_section'){
 259                                 <&| /page/info_section.mas, title=>'Delete trial data', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 260                                     <& /breeders_toolbox/trial/trial_deletion.mas, trial_id => $trial_id  &>
 261                                 </&>
 262 %} #End trial_deletion_section
 263 % if ($info_section_id eq 'trial_data_agreement_section'){
 264                                 <& /breeders_toolbox/data_agreement.mas, trial_id => $trial_id &>
 265 % } #End trial_data_agreement_section
 266 % if ($info_section_id eq 'trial_status_section'){
 267                                 <& /breeders_toolbox/trial/trial_status.mas, trial_id => $trial_id, trial_name => $trial_name, breeding_program_name => $breeding_program_name, location_name => $location_name, year => $year, trial_type => $trial_type, planting_date => $planting_date, transplanting_date => $transplanting_date, harvest_date => $harvest_date, trial_description => $trial_description, folder_id => $folder_id, design_name => $design_name, has_plant_entries => $has_plant_entries, phenotypes_fully_uploaded => $phenotypes_fully_uploaded, user_can_modify => $user_can_modify, user_name => $user_name &>
 268 % } #End trial_status_section
 269 % if ($info_section_id eq 'trial_soil_data_section'){
 270                                 <& /breeders_toolbox/trial/trial_soil_data.mas, trial_id => $trial_id &>
 271 % } #End trial_soil_data_section
 272
 273
 274 % if ($info_section_id eq 'stock_additional_info_section'){
 275                                 <& /stock/additional_info_section.mas, stock_id => $stock_id, type_name => $type_name, stockprops => $stockprops, edit_privs => $edit_privs, editable_stock_props => $editable_stock_props, editor_link => $editor_link, source_dbs => $source_dbs, locus_add_uri => $locus_add_uri, allele_div => $allele_div, is_owner => $is_owner &>
 276 % } #End stock_additional_info_section
 277 % if ($info_section_id eq 'stock_trials_section'){
 278                                 <& /stock/trials.mas, stock_id => $stock_id &>
 279 % } #End stock_trials_section
 280 % if ($info_section_id eq 'stock_upload_files'){
 281                                 <& /stock/accession_files.mas, stock_id => $stock_id &>
 282 % } #End stock_upload_files
 283 % if ($info_section_id eq 'stock_traits_section'){
 284                                 <& /stock/traits.mas, stock_id => $stock_id &>
 285 % } #End stock_traits_section
 286 % if ($info_section_id eq 'stock_genotypes_section'){
 287                                 <& /stock/direct_genotypes.mas, stock_id => $stock_id, map_html => $map_html &>
 288 % } #End stock_genotypes_section
 289 % if ($info_section_id eq 'stock_pedigree_section'){
 290                                 <&| /page/info_section.mas, title=>"Pedigree and Descendants" , collapsible=> 1, collapsed=>0 &>
 291                                     <& /pedigree/stock_pedigree.mas, stock_id => $stock_id, has_pedigree => $has_pedigree &>
 292                                 </&>
 293
 294                                 <& /pedigree/stock_pedigree_string.mas, stock_id => $stock_id &>
 295 % } #End stock_pedigree_section
 296 % if ($info_section_id eq 'stock_related_stock_section'){
 297                                 <& /stock/related_stock.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename, stock_type => $type_name &>
 298 % } #End stock_related_stock_section
 299 % if ($info_section_id eq 'stock_images_section'){
 300                                 <& /image/compare_images.mas, stock_id => $stock_id &>
 301
 302                                 <&| /page/info_section.mas, title=>"Images of This Stock(" .  scalar(@$image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 303                                     <& /image/print_images.mas , images=>$image_ids , dbh=>$dbh, additional_image_button_id=>'stock_images' &>
 304                                 </&>
 305
 306                                 <&| /page/info_section.mas, title=>"Images of Related Stock(s) (" .  scalar(@$related_image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 307                                     <& /image/print_images.mas , images=>$related_image_ids , dbh=>$dbh, additional_image_button_id=>'related_stock_images' &>
 308                                 </&>
 309 % } #End stock_images_section
 310 % if ($info_section_id eq 'stock_sequencing_status_section'){
 311                                 <& /stock/sequencing_status.mas, stock_id => $stock_id &>
 312 % } #End stock requencing status section
 313 % if ($info_section_id eq 'stock_literature_annotation_section'){
 314                                 <&| /page/info_section.mas, title=>"Literature annotation (".scalar( @$pubs ).")" , id=>"publications" , collapsible=>1, collapsed=>1 &>
 315
 316
 317 % foreach my $publication ( @$pubs  ) {
 318   <& /chado/publication.mas, pub=>$publication &>
 319     <br >
 320 % }
 321
 322                                 </&>
 323
 324                                 <&| /page/info_section.mas, id   => 'stock_ontology', title=>"Ontology annotation (" . $stockref->{ontology_count} . ")" &>
 325                                     <& /ontology/associate_ontology.mas,
 326                                     trait_db_name => $trait_ontology_db_name,
 327                                     object_id     => $stock_id ,
 328                                     object_name   => "stock",
 329                                     cvterm_add_uri=> $cvterm_add_uri,
 330                                     ontology_url  => "/stock/$stock_id/ontologies/",
 331                                     reference_uri => "/stock/$stock_id/references/",
 332                                     evidence_with_uri => "/stock/$stock_id/evidences/",
 333                                     show_form     => $is_owner  &>
 334                                 </&>
 335 % } #End stock_literature_annotation_section
 336 % if ($info_section_id eq 'stock_jbrowse_section'){
 337                                 <p id="jbrowse_check">[loading...]</p>
 338 % } #End stock_jbrowse_section
 339 % if ($info_section_id eq 'stock_comments_section'){
 340                                 <& /page/comments.mas, object_type=>'stock', object_id=>$stock_id, referer=>$referer &>
 341 % } #End stock_comments_section
 342 % if ($info_section_id eq 'stock_delete_section'){
 343                                 <& /stock/delete.mas, stock_id=>$stock_id &>
 344 % } #End stock_delete_section
 345
 346
 347 % if ($info_section_id eq 'manage_tissue_samples_field_trials'){
 348                                 <& /breeders_toolbox/tissue_samples/field_trials_with_tissue_samples.mas &>
 349 % } #End manage_tissue_samples_field_trials
 350 % if ($info_section_id eq 'manage_tissue_samples_genotyping_trials'){
 351                                 <& /breeders_toolbox/tissue_samples/genotyping_trials.mas &>
 352 % } #End manage_tissue_samples_genotyping_trials
 353 % if ($info_section_id eq 'manage_tissue_samples_sampling_trials'){
 354                                 <& /breeders_toolbox/tissue_samples/sampling_trials.mas &>
 355 % } #End manage_tissue_samples_sampling_trials
 356 % if ($info_section_id eq 'trial_details'){
 357                                 <& /breeders_toolbox/trial/trial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_type=>$trial_type, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, plot_width=>$plot_width, plot_length=>$plot_length, field_size=>$field_size, field_trial_is_planned_to_be_genotyped=>$field_trial_is_planned_to_be_genotyped, field_trial_is_planned_to_cross=>$field_trial_is_planned_to_cross, trial_stock_type => $trial_stock_type, trial_stock_count => $trial_stock_count, trial_owner => $trial_owner, latest_trial_activity => $latest_trial_activity &>
 358 % } #End trial_details
 359 % if ($info_section_id eq 'stocks_search_graphical_filtering'){
 360                                 <& /search/stocks_graphicalfiltering.mas &>
 361 % } #End stocks_search_graphical_filtering
 362
 363
 364 % if ($info_section_id eq 'genotyping_data_project_details'){
 365                                 <& /breeders_toolbox/genotyping_data_project/details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, year=>$year, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, genotyping_facility => $genotyping_facility, genotype_data_type => $genotype_data_type, trial_owner => $trial_owner &>
 366 % } #End genotyping_data_project_details
 367 % if ($info_section_id eq 'genotyping_data_project_protocols'){
 368                                 <& /breeders_toolbox/genotyping_data_project/protocols.mas, trial_id=>$trial_id &>
 369 % } #End genotyping_data_project_protocols
 370 % if ($info_section_id eq 'genotyping_data_project_data'){
 371                                 <& /breeders_toolbox/genotyping_data_project/genotype_data.mas, trial_id=>$trial_id &>
 372 % } #End genotyping_data_project_data
 373 % if ($info_section_id eq 'genotyping_project_plates'){
 374                                 <& /breeders_toolbox/genotyping_data_project/genotyping_plates.mas, trial_id=>$trial_id &>
 375 % } #End genotyping_project_plates
 376 % if ($info_section_id eq 'genotyping_project_deletion_section'){
 377                                 <& /breeders_toolbox/genotyping_data_project/genotyping_project_deletion.mas, trial_id=>$trial_id &>
 378 % } #End genotyping_project_deletion_section
 379 % if ($info_section_id eq 'project_pcr_genotype_data'){
 380                                 <& /breeders_toolbox/genotyping_data_project/pcr_genotype_data.mas, trial_id => $trial_id, marker_names => $marker_names &>
 381 % } #End project_pcr_genotype_data
 382
 383
 384 % if ($info_section_id eq 'identifier_generation_list'){
 385                                 <& /breeders_toolbox/identifier_generation/list_identifier_generation.mas &>
 386 % } #End identifier_generation_list
 387 % if ($info_section_id eq 'management_factor_details'){
 388                                 <& /breeders_toolbox/trial/management_factor_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, year=>$year, management_factor_type=>$management_factor_type, management_factor_date=>$management_factor_date &>
 389 % } #End management_factor_details
 390 % if ($info_section_id eq 'management_factor_design'){
 391                                 <& /breeders_toolbox/trial/design_section_management_factor.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name &>
 392 % } #End management_factor_design
 393
 394 % if ($info_section_id eq 'genotyping_protocol_details'){
 395                                 <& /breeders_toolbox/genotyping_protocol/details.mas, protocol_id => $protocol_id, protocol_name => $protocol_name, protocol_description => $protocol_description, marker_names => $marker_names, header_information_lines => $header_information_lines, reference_genome_name => $reference_genome_name, species_name => $species_name, create_date => $create_date, sample_observation_unit_type_name => $sample_observation_unit_type_name, marker_type => $marker_type, assay_type => $assay_type &>
 396 % } #End genotyping_protocol_details
 397 % if ($info_section_id eq 'genotyping_protocol_markers'){
 398                                 <& /breeders_toolbox/genotyping_protocol/markers.mas, protocol_id => $protocol_id, marker_info_headers => $marker_info_headers &>
 399 % } #End genotyping_protocol_markers
 400 % if ($info_section_id eq 'genotyping_protocol_genotype_data'){
 401                                 <& /breeders_toolbox/genotyping_protocol/genotype_data.mas, protocol_id => $protocol_id &>
 402 % } #End genotyping_protocol_genotype_data
 403 % if ($info_section_id eq 'genotyping_protocol_delete_genotype_data') {
 404                                 <& /breeders_toolbox/genotyping_protocol/delete_genotype_data.mas, protocol_id => $protocol_id &>
 405 % }
 406 % if ($info_section_id eq 'pcr_based_genotyping_markers'){
 407                                 <& /breeders_toolbox/genotyping_protocol/pcr_markers.mas, protocol_id => $protocol_id &>
 408 % } #End pcr_based_genotyping_markers
 409 % if ($info_section_id eq 'pcr_genotyping_protocol_genotype_data'){
 410                                 <& /breeders_toolbox/genotyping_protocol/pcr_genotype_data.mas, protocol_id => $protocol_id, marker_names => $marker_names &>
 411 % } #End pcr_genotyping_protocol_genotype_data
 412
 413
 414
 415 % if ($info_section_id eq 'crossingtrial_details'){
 416                                 <& /breeders_toolbox/cross/crossingtrial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner &>
 417 % } #End crossingtrial_details
 418
 419 % if ($info_section_id eq 'target_numbers_crossingtrial_section'){
 420                                 <& /breeders_toolbox/cross/target_numbers.mas, trial_id=>$trial_id &>
 421 % } #End target_numbers_crossingtrial_section
 422
 423 % if ($info_section_id eq 'crosses_in_crossingtrial_section'){
 424                                 <& /breeders_toolbox/cross/crosses_in_crossingtrial.mas, trial_id=>$trial_id &>
 425 % } #End crosses_in_crossingtrial_section
 426
 427 % if ($info_section_id eq 'additional_info_crossingtrial_section'){
 428                                 <& /breeders_toolbox/cross/cross_additional_info_crossingtrial.mas, trial_id=>$trial_id &>
 429 % } #End additional_info_crossingtrial_section
 430
 431 % if ($info_section_id eq 'cross_properties_crossingtrial_section'){
 432                                 <& /breeders_toolbox/cross/cross_properties_crossingtrial.mas, trial_id=>$trial_id &>
 433 % } #End cross_properties_crossingtrial_section
 434
 435 % if ($info_section_id eq 'progenies_in_crossingtrial_section'){
 436                                 <& /breeders_toolbox/cross/progenies_in_crossingtrial.mas, trial_id=>$trial_id &>
 437 % } #End progenies_in_crossingtrial_section
 438
 439 % if ($info_section_id eq 'seedlots_from_crossingtrial_section'){
 440                                 <& /breeders_toolbox/cross/seedlots_from_crossingtrial.mas, trial_id=>$trial_id, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, locations_by_program_json=>$locations_by_program_json &>
 441 % } #End seedlots_from_crossingtrial_section
 442
 443 % if ($info_section_id eq 'crossing_trial_from_field_trial_section'){
 444                                 <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'crossing_trial' &>
 445 % } #End crossing_trial_from_field_trial_section
 446
 447 % if ($info_section_id eq 'marker_set_summary_section'){
 448                                 <& /breeders_toolbox/markers/marker_set_summary.mas &>
 449 % } #End marker_set_summary_section
 450
 451 % if ($info_section_id eq 'crossing_experiment_deletion_section'){
 452                                 <& /breeders_toolbox/cross/crossing_experiment_deletion.mas, trial_id => $trial_id  &>
 453 %} #End crossing_experiment_deletion_section
 454
 455 % if ($info_section_id eq 'intercross_section'){
 456                                 <& /breeders_toolbox/cross/intercross_file_info.mas, trial_id => $trial_id  &>
 457 %} #End intercross_section
 458
 459 % if ($info_section_id eq 'progeny_search_section'){
 460                                 <& /search/cross/progeny_search_section.mas &>
 461 %} #End progeny_search_section
 462
 463 % if ($info_section_id eq 'cross_search_section'){
 464                                 <& /search/cross/cross_search_section.mas &>
 465 %} #End cross_search_section
 466
 467 % if ($info_section_id eq 'parent_search_section'){
 468                                 <& /search/cross/parent_search.mas &>
 469 %} #End parent_search_section
 470
 471 % if ($info_section_id eq 'all_cross_entries_section'){
 472                                 <& /breeders_toolbox/cross/all_cross_entries.mas &>
 473 %} #End all_cross_entries_section
 474
 475 % if ($info_section_id eq 'manage_nirs_main'){
 476                                 <& /tools/nirs/manage_nirs_main.mas, nirs_files => $nirs_files, deleted_nirs_files => $deleted_nirs_files, all_nirs_files => $all_nirs_files, all_deleted_nirs_files => $all_deleted_nirs_files, locations => $locations, sampling_facilities=>$sampling_facilities &>
 477 % } #End manage_nirs_main
 478
 479 % if ($info_section_id eq 'manage_sequence_metadata'){
 480     <& /tools/sequence_metadata/manage_sequence_metadata_main.mas &>
 481 % } #End manage_smd_main
 482
 483 % if ($info_section_id eq 'manage_drone_imagery_main'){
 484                                 <& /breeders_toolbox/drone_imagery/raw_image_section.mas &>
 485 % } #End manage_drone_imagery_main
 486
 487 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_section'){
 488                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_section.mas, id_extension=>$id_extension &>
 489 % } #End manage_drone_imagery_generate_plot_polygons_section
 490 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section'){
 491                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section.mas, id_extension=>$id_extension &>
 492 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section
 493 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points'){
 494                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section_ground_control_points.mas &>
 495 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points
 496 % if ($info_section_id eq 'manage_drone_imagery_standard_process_generate_plot_polygons_section'){
 497                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_section.mas &>
 498 % } #End manage_drone_imagery_standard_process_generate_plot_polygons_section
 499 % if ($info_section_id eq 'drone_run_project_details'){
 500                                 <& /breeders_toolbox/drone_imagery/drone_run_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, drone_run_date=>$drone_run_date &>
 501 % } #End trial_details
 502 % if ($info_section_id eq 'analysis_details'){
 503                                 <& /analyses/analysis_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, year=>$year, identifier_prefix=>$identifier_prefix, trial_stock_type => $trial_stock_type, analysis_metadata=>$analysis_metadata &>
 504 % } #End analysis_details
 505 % if ($info_section_id eq 'analysis_page_analysis_tools'){
 506                                 <& /breeders_toolbox/trial/correlation_workflow.mas, trial_id => $trial_id, is_analysis => 1 &>
 507
 508                                 <& /breeders_toolbox/trial/time_series_accessions_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 509
 510                                 <& /breeders_toolbox/trial/accession_rank_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 511
 512                                 <& /breeders_toolbox/trial/genotype_comparison_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 513 % }
 514 % if ($info_section_id eq 'model_details'){
 515                                 <& /analyses/model_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, analysis_metadata=>$analysis_metadata &>
 516 % } #End analysis_details
 517 % if ($info_section_id eq 'analysis_model_details'){
 518                                 <& /analyses/model_detail_page_section.mas, model_id => $model_id, model_name => $model_name, model_description => $model_description, model_properties => $model_properties, model_file_ids => $model_file_ids, model_type_name => $model_type_name, model_files => $model_files, identifier_prefix => $identifier_prefix &>
 519 % } #End analysis_model_details
 520 % if ($info_section_id eq 'model_analyses'){
 521                                 <& /analyses/model_detail_page_analyses_section.mas, model_id => $model_id &>
 522 % } #End model_analyses
 523 % if ($info_section_id eq 'analytics_protocol_details'){
 524                                 <& /analytics_protocols/analytics_protocols_details.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name, analytics_protocol_description=>$analytics_protocol_description, analytics_protocol_type_id=>$analytics_protocol_type_id, analytics_protocol_type_name=>$analytics_protocol_type_name, analytics_protocol_create_date=>$analytics_protocol_create_date, analytics_protocol_properties=>$analytics_protocol_properties, analytics_protocol_result_summary=>$analytics_protocol_result_summary &>
 525 % } #End analytics_protocol_details
 526 % if ($info_section_id eq 'analytics_protocol_result_files'){
 527                                 <& /analytics_protocols/analytics_protocols_result_files.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name &>
 528 % } #End analytics_protocol_result_files
 529 % if ($info_section_id eq 'model_deletion_section'){
 530                                 <&| /page/info_section.mas, title=>'Delete model', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 531                                     <& /analyses/model_deletion.mas, model_id => $model_id  &>
 532                                 </&>
 533 % } #End model_deletion_section
 534 % if ($info_section_id eq 'manage_file_share_dump'){
 535                                 <& /breeders_toolbox/file_share/file_dump_share_files.mas &>
 536 % } #End manage_file_share_dump
 537
 538 % if ($info_section_id eq 'program_location_section'){
 539                                 <& /breeders_toolbox/program/program_locations.mas, program_id => $program_id &>
 540 % } #End program_location_section
 541 % if ($info_section_id eq 'program_project_section'){
 542                                 <& /breeders_toolbox/program/program_project_section.mas, program_id => $program_id &>
 543 % } #End program_project_section
 544 % if ($info_section_id eq 'program_stock_section'){
 545                                 <& /breeders_toolbox/program/program_stock_section.mas, program_id => $program_id &>
 546 % } #End program_stock_section
 547 % if ($info_section_id eq 'program_phenotype_section'){
 548                                 <& /breeders_toolbox/program/traits.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 549 % } #End program_phenotype_section
 550 % if ($info_section_id eq 'program_product_profile_section'){
 551                                 <& /breeders_toolbox/program/product_profile.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 552 % } #End program_product_profile_section
 553
 554 % if (!$info_section_id){
 555                                 <p>No section specified! Main content goes here!</p>
 556 % }
 557
 558                             </div>
 559                         </div>
 560                     </&>
 561                 </div>
 562             </div>
 563         </div>
 564     </div>
 565 </div>