mason/pca/analysis.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /pca/analysis.mas - pca analysis using a list of trials or genotypes
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15 <%args>
  16
  17 </%args>
  18
  19 <link rel="stylesheet" href="/static/css/solgs/solgs.css" type="text/css" />
  20 <& /util/import_javascript.mas, classes => ["d3.d3Min", "solGS.pca"] &>
  21
  22 <style>
  23
  24 .axis path, .axis line {
  25   fill: none;
  26   stroke: #000;
  27   shape-rendering: crispEdges;
  28 }
  29 </style>
  30
  31 <br />
  32 <br />
  33
  34 <&| /page/info_section.mas,
  35     collapsible => 0,
  36     collapsed   => 0,
  37     title       => "Select a dataset and analyze its population structure -- principal component analysis (PCA)",
  38   &>
  39
  40
  41  <div class="fileupload-buttonbar">
  42
  43     <div class="list_upload" id="list_label">
  44       <label for="pca_genotypes_list">Select</label>
  45     </div>
  46     <div class="list_upload" id="pca_genotypes_list">
  47     </div>
  48     <div class="list_upload" id="pca_genotypes_list_upload">
  49       <input type="button" value="Go" />
  50     </div>
  51
  52     <div class="list_upload" style="margin-left:5px">
  53       <i class="glyphicon-plus"></i>
  54       <a href="/solgs/breeder_search" style="color:#ffffff">Create a new dataset</a>
  55     </div>
  56
  57     <br>
  58     <br>
  59
  60     <!-- The container for the uploaded list pca populations -->
  61     <div class="sub_infosectioncontent" id="uploaded_pca_populations" style="display:none"></div>
  62     <br>
  63
  64 </div>
  65
  66 </&>
  67
  68
  69 <div id="pca_canvas"></div>
  70 <div id="pca_plot"></div>
  71   <div id="pca_message" style="font-weight:bold;text-align:center;color:#A7C942">
  72
  73   </div>