mason/links/related_sites.mas

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   5     <table summary="" width="720" cellpadding="0" cellspacing="0"
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   8         <td>
   9           <h4>Solanaceae Resources on the Web</h4>
  10
  11           <table summary="">
  12             <tr>
  13               <td width="20">&nbsp;</td>
  14
  15               <td>
  16                 <strong>Solanaceae Systematics, Descriptions,
  17                 Images, Germplasms</strong>
  18
  19                 <dl>
  20                   <dt><br /><a href="http://www.ru.nl/bgard/">Experimental Garden and Genebank of the Radboud University of Nijmegen</a></dl>
  21                 <dd>The Experimental Garden and Genebank of the Radboud University of Nijmegen pays special attention to the family of Solanaceae and maintains the most extensive ex situ plant collection of non-tuberous Solanaceae species in the world.  </dd>
  22
  23                 <dl>
  24                   <dt><br /><a href="http://www.ecpgr.cgiar.org/">European Cooperative Programme for Plant Genetic Resources</a></dl>
  25
  26                 <dd>The European Cooperative Programme for Plant Genetic Resources (ECPGR) is a collaborative programme among most European countries aimed at ensuring the long-term conservation and facilitating the increased utilization of plant genetic resources in Europe (<a href="http://www.ecpgr.cgiar.org/networks/vegetables/solanaceae.html">Solanaceae</a>, <a href="http://www.ecpgr.cgiar.org/networks/sugar_starch_fibre_crops/potato.html">Potato</a>)</dd>
  27
  28                 <dl>
  29
  30                   <dt><br /><a href="http://solcap.msu.edu" target="_new" >SolCAP</a></dt>
  31                   <dd>The official website of the USDA sponsored Solanaceae Coordinated Agricultural Project (SolCAP), which will phenotype and genotype large panels of tomato and potato accessions. Results will also be made available on SGN.</dd>
  32                   <dt><a href=
  33                   "http://www.nhm.ac.uk/research-curation/projects/solanaceaesource/" target="_new">Solanum
  34                   Source</a></dt>
  35
  36                   <dd>The official website of the Solanum PBI
  37                   project, containing species descriptions,
  38                   specimen data from herbaria, nomenclatural data
  39                   about names and their places of publication, and
  40                   a bibliography of scientific articles about
  41                   members of the family.</dd>
  42
  43
  44                   <dt><br /><a href=
  45                   "http://www.bgard.science.ru.nl/" target="_new">Nijmegen
  46                   Experimental Garden and Genebank</a> in the
  47                   Netherlands</dt>
  48
  49                   <dd>A botanical garden with one of the major
  50                   collections of Solanaceae plants.</dd>
  51
  52
  53                 </dl>
  54
  55                 <strong>Tomato Resources</strong>
  56
  57
  58
  59                 <dl>
  60                   <dt><a href="http://tomatoma.nbrp.jp/index.jsp" target="_new"> TOMATOMA Database</a>
  61     </dt>
  62     <dd>A database of EMS and Neutron mutants in the MicroTom background in Japan.</dd>
  63
  64     <dt><a href="http://www.agrobios.it/tilling" target="_new"> LycoTILL</a></dt>
  65 <dd>  LycoTILL is an interactive and evolving database which allows search on-line of images and phenotype data of the  tomato (cv /Red Setter/) mutant collection generated with EMS mutagenesis experiments.
  66 The Red Setter mutant population was developed for TILLING applications but can also be used  for forward  genetic studies.</dd>
  67
  68                   <dt><a href="http://phn.huji.ac.il/RTQ/" target="_new" >Phenom Networks</a></dt>
  69                   <dd>The Phenom Network engine by Dani Zamir and Yaniv Semel represents knowledge of complex traits and has tomato ILs, barley and rose traits with more organisms being added soon.</dd>
  70
  71                   <dt><a href="http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/" target="_new" >Tomato SNP database</a></dt>
  72                   <dd>A tomato SNP website by Jose Jimenez and Julin Maloof at UC Davis</dd>
  73
  74                   <dt><br /><a href=
  75                   "http://www.kazusa.or.jp/jsol/microtom/index.html" target="_new">MiBASE</a>, the Kazusa
  76                   Microtom Site</dt>
  77
  78                   <dd>EST and unigene dataset from Microtom,
  79                   including GO annotations and Pathway Viewer.</dd>
  80
  81                   <dt><br /><a href="http://www.pgb.kazusa.or.jp/kaftom/" target="_new" >KaFTom</a></dt>
  82                   <dd>The Kazusa Micro-Tom full-length cDNA Site</dd>
  83
  84                   <dt><br /><a href="http://tgc.ifas.ufl.edu" target="_new">The
  85                   Tomato Genetics Cooperative</a></dt>
  86
  87                   <dd>Homepage of the Tomato Genetics Cooperative
  88                   with access to publications on-line.</dd>
  89
  90                   <dt><br /><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
  91                   Genetic Resource Center (TGRC)</a></dt>
  92
  93                   <dd>Large collection of Solanaceae germplasms,
  94                   with a special focus on tomato.</dd>
  95
  96
  97                   <dt><br /><a href="http://ted.bti.cornell.edu/" target="_new" >Tomato
  98     Expression Database (TED)</a></dt>
  99
 100                   <dd>Site dedicated to tomato microarrays.</dd>
 101
 102                   <dt><br /><a href=
 103                   "http://www.tomato.org/" target="_new">California Tomato Commission</a></dt>
 104
 105                   <dd>The website of the California Tomato Grower\'s
 106                   Association. Contains nutritional information and
 107                   recipes.</dd>
 108
 109
 110                   <dt><br /><a href="http://www.ars.usda.gov/Main/site_main.htm?modecode=19-10-05-00" target="_new" >USDA ARS Bioinformatics Homepage</a></dt>
 111
 112                   <dd>The website of the USDA bioinformatics unit
 113                   in Geneva, NY</dd>
 114
 115                   <dt><br /><a href=
 116                   "http://solcap.msu.edu/" target="_new" >
 117                   SolCAP project</a></dt>
 118                   <dd>The Solanaceae Coordinated Agriculture Project</dd>
 119
 120                   <dt><br /><a href=
 121                   "https://www.eu-sol.wur.nl" target="_new" >EU-SOL Tomato Core Collection Phenotype Database</a></dt>
 122                   <dd>The Tomato Core Collection Phenotype Database by the <a href="http://www.eu-sol.net">EU-SOL</a> Project funded by the 6th framework program of the European Union.</dd>
 123
 124                   <dt><br /><a href=
 125                   "http://tomato.nbrp.jp/indexEn.html" target="_new" >Tomato National BioResource Project</a></dt>
 126                   <dd>The National BioResource Project (NBRP) is a national project that aims to collect, preserve, and provide bioresources for life sciences research.</dd>
 127
 128                 </dl>
 129                 <strong>Tomatoes - gardening and heirloom varieties</strong>
 130                 <dl>
 131                 <dt><a href="http://www.tomatogardeningguru.com/" target="_new" >www.tomatogardeningguru.com</a></dt>
 132                 <dd>A website about growing tomatoes organically</dd>
 133                 <dt><a href="http://www.tomatofest.com" target="_new" >TomatoFest.com</a></dt>
 134                 <dd>Heirloom tomato fest</dd>
 135                 </dl>
 136                 <strong>Tomatoes - the lighter side</strong>
 137                 <dl>
 138                 <dt><a href="http://tomatoesareevil.com" target="_new">TomatoesAreEvil.com</a></dt>
 139                 <dd>A website by tomato haters (that\'s definitely not us!)</dd>
 140                 <dt><br /><a href="http://killertomatoes.com" target="_new" >Killertomatoes.com</a></dt>
 141
 142                 <strong>Potato Resources</strong>
 143
 144                 <dl>
 145                   <dt><a href="http://www.public.iastate.edu/~djh/">Potato Phloem Biology Project</a>
 146                  </dt>
 147                   <dd>An NSF funded project to study signaling networks that are involved in the induction of tuber formation.</dd>
 148 </dl>
 149
 150
 151                 <dl>
 152
 153                   <dt><a href="http://www.potatodiseases.org/" target="_new" >PotatoDiseases.org</a></dt>
 154                   <dd>A site describing diseases of potato from the University of Michigan.</dd>
 155
 156                   <dt><a href="http://www.cpgp.ca" target="_new" >Canadian Potato Genome Project</a></dt>
 157                   <dd>The Canadian Potato Genome Project (CPGP) was launched in 2002 to develop resources in gene discovery in potatoes, for use by Canadian researchers and their partners.</dd>
 158
 159                   <dt><a href="https://gabi.rzpd.de/PoMaMo.html" target="_new" >PoMaMo
 160                   Database</a></dt>
 161
 162                   <dd>Potato genome data from the Max-Planck
 163                   Institute for Plant Breeding Research, Cologne,
 164                   Germany, which includes SNP data, maps, marker
 165                   sequences, references and more.</dd>
 166
 167                   <dt><br /><a href="http://www.cipotato.org" target="_new" >Centro
 168                   Internacional de la Papa</a> (International
 169                   Potato Center, Peru)</dt>
 170
 171                   <dd>The International Potato Center in Lima,
 172                   Peru, with potato specific databases and
 173                   resources, such as the <a href=
 174                   "http://grcc.cip.cgiar.org/genebank/" target="_new">CIP Potato
 175                   Genebank</a> and the <a href=
 176                   "http://wpa.riu.cip.cgiar.org/index.php" target="_new" >World Potato
 177                   Atlas</a></dd>
 178
 179                   <dd>A site for potato and biotechnology
 180                   issues.</dd>
 181
 182                   <dt><br /><a href="http://gilb.cip.cgiar.org/" target="_new" >Global
 183                   Initiative for Late Blight (GILB)</a></dt>
 184
 185                   <dd>A collaboration for Late Blight
 186                   research.</dd>
 187
 188                   <dt><br /><a href=
 189                   "http://www.potgenebank.org/" target="_new" >Intergenebank for
 190                   Potato</a></dt>
 191
 192                   <dd>A database containing accession data from
 193                   different genebanks around the world, including
 194                   an SSR database.</dd>
 195
 196                   <!-- dt><br /><a href=
 197                   "http://www.potatogenome.org/nsf4/" target="_new" >PotatoGenome.org</a></dt  DEFUNCT?? -->
 198
 199                   <dt><br /><a href=
 200                   "http://www.europotato.org/" target="_new" >European Cultivated Potato Database</a></dt>
 201
 202
 203
 204                   <dd>The official website of the NSF potato genome
 205                   project.</dd>
 206                 </dl>
 207
 208                 <strong>Pepper Resources</strong>
 209
 210                 <dl>
 211                   <dt><a href=
 212                   "http://plant.pdrc.re.kr/ks200201/pepper.html" target="_new" >KRIBB
 213                   Pepper Resources</a></dt>
 214
 215                   <dd>A pepper EST database at KRIBB</dd>
 216
 217                   <dt><br /><a href=
 218                   "http://www.cnph.embrapa.br/capsicum/" target="_new" >Embrapa
 219                   Capsicum site</a></dt>
 220
 221                   <dd>A site dedicated to Pepper in Brazil</dd>
 222                 </dl>
 223
 224                 <strong>Petunia Resources</strong>
 225
 226                 <dl>
 227                   <dt><a href=
 228                   "http://www.petuniaplatform.net" target="_new" >Petuniaplatform.net</a></dt>
 229
 230                   <dd>A website dedicated to Petunia, with
 231                   contacts, techniques, bibliography and other
 232                   information.</dd>
 233                 </dl>
 234
 235                 <strong>Eggplant Resources</strong>
 236
 237                 <dl>
 238                   <dt><a href=
 239                   "http://www.bgard.science.ru.nl/WWW-IPGRI/eggplant.htm" target="_new" >Eggplant Database</a>
 240                    </dt>
 241 </dl>
 242
 243 <br />
 244                 <strong><i>Solanum dulcamara</i> Resources</strong>
 245
 246                 <dl><dt><a href="http://www.ru.nl/bsweet/">The B'sweet website</a></dt>
 247                   <dd><i>Solanum dulcamara</i> is a new research model for adaptation and ecology. See also <a href="http://www.ru.nl/ecogen/">Nicole van Ham's website</a></dd>
 248
 249                   </dl>
 250
 251                 <strong>Coffee Resources</strong>
 252
 253                 <dl>
 254                   <dt><a href="http://www.coffeedna.net/" target="_new" >CoffeeDNA
 255                   - A site for Coffee Genomics in Italy</a></dt>
 256
 257                   <dd>A site about coffee and coffee genomics.
 258                   Login required for certain functions.</dd>
 259                 </dl>
 260
 261                 <strong>Germplasm Resources</strong>
 262
 263                 <dl>
 264                   <dt><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
 265                   Genetic Resource Center (TGRC)</a></dt>
 266
 267                   <dd>Large collection of Solanaceae germplasms,
 268                   with a special focus on tomato.</dd>
 269
 270                   <dt><br /><a href="http://www.ars-grin.gov/npgs/" target="_new" >GRIN,
 271                   The National Germplasm System</a></dt>
 272
 273                   <dd>Large database of germplasm, integrating many
 274                   germplasm centers in the United States.</dd>
 275                 </dl>
 276
 277                 <strong>Euasterid Resources</strong>
 278
 279                 <dl>
 280                   <dt><a href="http://www.antirrhinum.net" target="_new" >Antirrhinum.net</a></dt>
 281                   <dd>The DragonDB database for Antirrhinum</dd>
 282                 </dl>
 283
 284                 <strong>Other Sequence Resources</strong>
 285
 286                 <dl>
 287                   <dt><a href="http://www.genome.arizona.edu/" target="_new" >The
 288                   Arizona Genome Initiative (AGI)</a></dt>
 289
 290                   <dd>The AGI is the place to <a href=
 291                   "http://www.genome.arizona.edu/orders/" target="_new" >order</a>
 292                   many of the ESTs and BAC clones for many
 293                   Solanaceae species such as potato. Please note
 294                   that BAC and EST <a href=
 295                   "http://ted.bti.cornell.edu/order/" target="_new" >orders</a>
 296                   for tomato are handled by the <a href=
 297                   "http://bti.cornell.edu/" target="_new" >Boyce Thompson
 298                   Institute</a>.</dd>
 299
 300                   <!-- LINK DEAD 11/2008 dt><br /><a href="http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=tomato">The
 301                   Institute for Genomic Research\'s (TIGR) Tomato
 302                   Gene Index</a></dt>
 303
 304                   <dd>The TIGR gene index for tomato.</dd -->
 305
 306                   <!--  LINK DEAD 11/2008 dt><br /><a href=
 307                   "http://grain.jouy.inra.fr/webace/webace?db=solgenes">
 308                   SolGenes</a></dt>
 309
 310                   <dd>The original SolGenes database. Still a
 311                   treasure of information.</dd -->
 312                 </dl>
 313               </td>
 314             </tr>
 315           </table>
 316
 317           <h4><a name="related" id="related"></a>Links to related
 318           websites</h4>
 319
 320           <ul>
 321             <li><a href="http://seedplants.org" target="_new" >Seedplants.org</a>, a site about seed plant descriptions and taxonomy.</li>
 322             <li><a href=
 323             "http://internt.nhm.ac.uk/jdsml/nature-online/seeds-of-trade/" target="_new" >Seeds of
 324             Trade</a> - a virtual book by Henry Hobhouse and Sandra
 325             Knapp about the history of plant cultivation.</li>
 326
 327             <li><a href="http://www.arabidopsis.org" target="_new" >TAIR</a> - The
 328             Arabidopsis Information Resource</li>
 329
 330             <li><a href="http://www.medicago.org" target="_new" >Medicago truncatula</a>
 331             - a model for legume research</li>
 332
 333             <li><a href="http://www.gramene.org" target="_new" >Gramene</a> - a
 334             comparative mapping resource for the grasses</li>
 335
 336             <li><a href="http://cggc.agtec.uga.edu" target="_new" >Comparative
 337             Grass Genomics Center</a> - a comparative resource for
 338             grasses, focusing on <em>Sorghum</em>.</li>
 339
 340             <li><a href=
 341             "http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp" target="_new" >OryzaBase</a>
 342             - Integrated Rice Science Database</li>
 343
 344             <li><a href="http://www.maizeGDB.org" target="_new" >MaizeGDB</a>
 345             - Maize Genetics and Genomics Database</li>
 346
 347             <li><a href="http://www.plantGDB.org" target="_new" >PlantGDB</a> -
 348             Plant Genome DataBase</li>
 349
 350             <li><a href="http://www.ncbi.nlm.nih.gov/" target="_new" >NCBI</a> -
 351             National Center for Biotechnology Information</li>
 352
 353             <li><a href="http://www.biocyc.org" target="_new" >BioCyc</a>,
 354             <a href="http://www.metacyc.org" target="_new" >MetaCyc</a> and
 355             <a href=
 356             "http://www.arabidopsis.org/biocyc/index.jsp" target="_new" >AraCyc</a> -
 357             Collections of curated biochemical pathways.</li>
 358
 359             <li><a href="http://www.genome.ad.jp/kegg/" target="_new" >KEGG</a> -
 360             Kyoto Encyclopedia of Genes and Genomes.</li>
 361
 362             <li><a href="http://www.biomoby.org" target="_new" >The BioMoby
 363             Project</a> - the database interoperability
 364             project</li>
 365
 366             <li><a href="http://www.genomics.cornell.edu" target="_new" >Cornell
 367             Genomics Initiative</a></li>
 368
 369             <li><a href="http://biocurator.org" target="_new" >Biocurator.org</a> - the official site for biocuration.</li>
 370           </ul><br />
 371           <br />
 372           <br />
 373           <br />
 374           <br />
 375         </td>
 376       </tr>
 377     </table>
 378
 379   </center>