improve debug output of 404 errors
[sgn.git] / cgi-bin / community / feature / 200504.pl
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1 use strict;
2 use CXGN::Page;
3 my $page=CXGN::Page->new('200504.html','html2pl converter');
4 my $stylesheet=<<END_STYLESHEET;
5 <style type="text/css">
6 <!--
7 body {
8 color: #000000;
9 background-color: #ffffff;
12 p {
13 margin-left: 40px;
14 text-align: justify;
17 .footnote {
18 font-size: small;
19 /*width: 700px;*/
20 text-align:center;
23 .bibliography {
24 text-indent: -20px;
26 -->
27 </style>
28 END_STYLESHEET
30 $page->header('Taylor Lab', undef, $stylesheet);
31 print<<END_HEREDOC;
33 <center>
34 <h1>Taylor Lab</h1>
35 </center>
37 <p class="footnote"><img src="/static_content/community/feature/200504-1.jpg" border="0" width=
38 "800" height="600" alt="Taylor Lab Lab" /><br />
39 <strong>From left to right:</strong> Mark Taylor, Laurence
40 Ducreux, Wayne Morris</p>
42 <p class="footnote" style=
43 "float:right; width:375; text-align:center;"><img src=
44 "/static_content/community/feature/200504-2.jpg" border="0" width="350" height="271" alt=
45 "Ev-4, Crt B-9" /><br />
46 <strong>Figure 1:</strong> Over-expression of a bacterial
47 phytoene synthase gene (<em>CrtB</em>) increases the tuber
48 carotenoid content and radically changes the types of carotenoid
49 that accumulate in tubers (right) compared with controls
50 (left).</p>
52 <p>The Taylor lab is part of the Scottish Crop Research
53 Institute.</p>
55 <p>Over the past 16 years we have studied many aspects of potato
56 tuber development and tuber quality traits. We have a particular
57 interest in the control of the potato tuber life-cycle,
58 addressing issues such as tuber initiation, tuber size
59 distribution and control of tuber dormancy.</p>
61 <p>In recent years we have focused on isoprenoid metabolism in
62 potato. Isoprenoids are a large group of metabolites that impact
63 directly on nutritional quality (for example carotenoid content)
64 and also on plant growth and development (for example
65 gibberellins, cytokinins). Understanding the regulation of this
66 metabolic network remains a major challenge. Using a transgenic
67 approach we have perturbed isoprenoid metabolism in potato tubers
68 and obtained several phenotypes of interest &acirc;&euro;&ldquo;
69 such as enhanced tuber beta-carotene content (Figure
70 1).</p><br clear="all" />
72 <p class="footnote" style=
73 "float:right; width:375; text-align:center;"><img src=
74 "/static_content/community/feature/200504-3.jpg" border="0" width="350" height="274" alt=
75 "Over expression of a bacterial DXS gene" /><br />
76 <strong>Figure 2:</strong> Over-expression of a bacterial DXS
77 gene results in an early sprouting phenotype (right) compared
78 with empty vector controls (left).</p>
80 <p>Using profiling methodologies in combination with the
81 transgenics we hope to learn how the isoprenoid metabolic
82 pathways are regulated. In other transgenics we over-expressed a
83 bacterial gene encoding 1-deoxy-D-xylulose 5
84 &acirc;&euro;&ldquo;phosphate synthase. Although there was only a
85 small impact on tuber carotenoid profile, major changes occurred
86 in the tuber life-cycle, providing us with clues as to how
87 dormancy and sprouting is controlled (Figure 2).</p>
89 <p>Although we are a small group, we interact with many
90 colleagues at SCRI. We are interested in using VIGS in potato
91 tubers to rapidly assess gene function and work with Dr
92 Christophe Lacomme&acirc;&euro;&trade;s group in this area. Dr
93 Steve Millam provides expertise in potato transformation and
94 tissue culture and Dr Pete Hedley collaborates with microarray
95 experiments. We are increasingly adopting a genetic approach to
96 dissecting potato quality traits and work closely with Drs Gavin
97 Ramsay and Glenn Bryan in these areas, benefiting also from the
98 Commonwealth Potato Collection at SCRI.</p>
100 <p>In the future we shall direct our attention to looking at
101 traits of interest to the potato industry such as flavour and
102 texture. We shall work closely with colleagues in the Quality,
103 Health and Nutrition programme who are developing metabolomic
104 approaches, an effort lead by Professor Howard Davies and Dr
105 Derek Stewart. The development of genetic, genomic and
106 metabolomic resources for potato makes this a very exciting time
107 for potato research, with real prospects for finding solutions to
108 age-old problems.</p>
110 <h2>Contact Information</h2>
112 <p>Dr. Mark Taylor<br />
113 Quality, Health, Nutrition,<br />
114 Scottish Crop Research Institute,<br />
115 Invergowrie,<br />
116 Dundee,<br />
117 DD2 5DA,<br />
118 UK.<br />
119 Email: <a href=
120 "mailto:M.Taylor\@scri.sari.ac.uk">M.Taylor\@scri.sari.ac.uk</a><br />
122 Tel: +44 1382 562731<br />
123 Website: <a href=
124 "http://www.scri.sari.ac.uk/">http://www.scri.sari.ac.uk/</a></p><br clear="all" />
127 <h2>Selected Publications</h2>
129 <p class="bibliography">Taylor MA, Ramsay G (2005) Carotenoid
130 biosynthesis in plant storage organs: recent advances and
131 prospects for improving plant food quality. Physiol Plant in
132 press</p>
134 <p class="bibliography">Ducreux LJ, Morris WL, Hedley PE,
135 Shepherd T, Davies HV, Millam S, Taylor MA (2005). Metabolic
136 engineering of high carotenoid potato tubers containing enhanced
137 levels of {beta}-carotene and lutein. J Exp Bot
138 56(409):81-89.</p>
140 <p class="bibliography">Ducreux LJ, Morris WL, Taylor MA, Millam
141 S (2005). <em>Agrobacterium</em>-mediated transformation of
142 <em>Solanum phureja</em>. Plant Cell Reports
143 DOI:&Acirc;&nbsp;10.1007/s00299-004-0902-z</p>
145 <p class="bibliography">Witte CP, Tiller S, Isidore E, Davies HV,
146 Taylor MA (2005) Analysis of two alleles of the urease gene from
147 potato: polymorphisms, expression and extensive alternative
148 splicing of the corresponding mRNA. J Exp Bot 56:91-99</p>
150 <p class="bibliography">Faivre-Rampant O, Gilroy E, Hrubikova K,
151 Hein I, Millam S, Loake G, Birch PRJ, Taylor MA, Lacomme C (2004)
152 Potato virus X-induced gene silencing in leaves and tubers of
153 potato. Plant Physiology 134, 1308-1316</p>
155 <p class="bibliography">Morris WL, Ducreux L, Griffiths DW,
156 Stewart D, Davies HV, Taylor MA (2004) Carotenogenesis during
157 tuber development and storage in potato. J Exp Bot 55,
158 975-982</p>
160 <p class="bibliography">Faivre-Rampant O, Cardle L, Marshall D,
161 Viola R, Taylor MA (2004) Changes in gene expression during
162 meristem activation processes in <em>Solanum tuberosum</em> with
163 a focus on the regulation of an auxin response factor gene. J Exp
164 Bot 55, 613-622</p>
166 <p class="bibliography">Faivre-Rampant O, Bryan GJ, Roberts AG,
167 Milbourne D, Viola R, Taylor MA (2004) Regulated expression of a
168 novel TCP domain transcription factor indicates an involvement in
169 the control of meristem activation processes in <em>Solanum
170 tuberosum</em> J. Exp Bot 55, 951-953</p>
172 <p class="bibliography">Witte C-P, Tiller SA, Taylor MA and
173 Davies HV (2002) Leaf urea metabolism in potato: Urease activity
174 profile and patterns of recovery and distribution of
175 <sup>15</sup>N after foliar urea application in wild-type and
176 urease-antisense transgenics. Plant Physiol 128, 1129-1136</p>
178 <p class="bibliography">Taylor MA, Ross HA, McRae D, Wright F,
179 Viola R and Davies HV (2001) cDNA cloning and characterisation of
180 a potato &alpha; glucosidase:expression in <em>E.coli</em> and
181 effects of down-regulation in transgenic potato. Planta 213,
182 258-264</p>
184 <p class="bibliography">Witte CP, Isidore E, Tiller SA, Davies
185 HV, Taylor MA (2001) Functional characterisation of urease
186 accessory protein G (ureG) from potato. Plant Molecular Biology
187 45, 169-179</p>
189 <p class="bibliography">Taylor MA, Ross HA, McRae D, Stewart
190 D,Roberts I, Duncan G, Wright F, Millam S and Davies HV (2000) A
191 potato &alpha; glucosidase gene encodes a glycoprotein processing
192 &alpha;-glucosidase II-like activity. Demonstration of enzyme
193 activity and effects of down-regulation in transgenic plants.
194 Plant Journal 24, 305-316</p>
196 <p class="bibliography">Davies PJ, Simko I, Mueller SM, Yencho
197 GC, Lewis C, McMurry S, Taylor MA and Ewing EE (1999)
198 Quantitative trait loci for polyamine content in an RFLP-mapped
199 potato population and their relationship to tuberisation. Physiol
200 Plant 106, 210-218</p>
202 <p class="bibliography">Rafart Pedros A, MacLeod MR, Ross HA,
203 McRae D, Tiburcio AF, Davies HV and Taylor MA (1999) Manipulation
204 of the S-adenosylmethionine decarboxylase transcript level in
205 potato tubers. Planta 209, 153-160</p>
207 <p class="bibliography">Taylor MA, George LA, Ross HA and Davies
208 HV (1998) cDNA cloning of a potato alpha-glucosidase gene and
209 functional characterisation by complementation of a yeast mutant.
210 Plant Journal 13, 419-425</p>
212 <p class="bibliography">Kumar A, Taylor MA, Mad Arif SA and
213 Davies HV (1996) Potato plants expressing antisense and sense
214 S-adenosylmethionine decarboxylase (SAMDC) transgenes show
215 altered levels of polyamines and ethylene. Plant Journal 9,
216 147-158</p>
218 <p class="bibliography">Taylor MA, Ross HA Gardner A and Davies
219 HV (1995) Characterisation of the fructokinase gene from potato
220 J.Plant Physiol.145, 253-257</p>
222 <p class="bibliography">Mad Arif SA, Taylor MA, George LA, Butler
223 AR, Burch LR, Davies HV, Stark MJR and Kumar A (1994)
224 Characterisation of the S-adenosylmethionine decarboxylase gene
225 of potato. Plant Mol. Biol. 26, 327-338</p>
227 <p class="bibliography">Taylor MA, Mad Arif SA, Kumar A, Davies
228 HV, Scobie LA, Pearce SR and Flavell AJ (1992) Expression and
229 sequence analysis of cDNAs induced during the early stages of
230 tuberisation in different organs of the potato plant (<em>Solanum
231 tuberosum</em> L.). Plant Mol. Biol. 20, 641-651</p>
232 END_HEREDOC
233 $page->footer();