mason/breeders_toolbox/index.mas

   1
   2 <%doc>
   3
   4 </%doc>
   5
   6 <style type="text/css">
   7     @import url("/css/icon_nav.css");
   8
   9     div.page_introduction {
  10         margin-bottom: 0;
  11     }
  12
  13     #icon_nav {
  14         width: 720px;
  15         height: 500px;
  16         position: relative;
  17     }
  18
  19     .SNPTool {
  20         position: relative;
  21         top: 100px;
  22         left: 50px;
  23     }
  24
  25     .SNPToolSubMenu {
  26         background-image: url(../images/MapsMarkersSub.png);
  27         width: 227px;
  28         height: 341px;
  29         padding-top: 15px;
  30         position: relative;
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  32         left: 0px;
  33         z-index: 1;
  34     }
  35
  36
  37     .Markers {
  38         position: relative;
  39         top: 110px;
  40         left: 400px;
  41     }
  42
  43     .MarkersSubMenu {
  44         background-image: url(../images/MapsMarkersSub.png);
  45         width: 227px;
  46         height: 341px;
  47         padding-top: 15px;
  48         position: relative;
  49         top: 0px;
  50         left: 0px;
  51     }
  52
  53
  54     .Phenotypes {
  55         position: relative;
  56         top: 20px;
  57         left: -30px;
  58     }
  59
  60     .TraitsSubMenu {
  61         background-image: url(../images/MapsMarkersSub.png);
  62         width: 227px;
  63         height: 341px;
  64         padding-top: 15px;
  65         position: relative;
  66         top: 0px;
  67         left: 0px;
  68     }
  69
  70
  71     .QTLTool {
  72         position: relative;
  73         top: 170px;
  74         left: 120px;
  75     }
  76
  77     .QTLToolSubMenu {
  78         background-image: url(../images/MapsMarkersSub.png);
  79         width: 227px;
  80         height: 341px;
  81         padding-top: 15px;
  82         position: relative;
  83         top: 0px;
  84         left: 0px;
  85         z-index: 1;
  86     }
  87
  88     .Genes {
  89         position: relative;
  90         top: 10px;
  91         left: 130px;
  92     }
  93
  94
  95
  96 </style>
  97
  98 <& /page/page_title.mas, title=>'SGN Breeders Toolbox' &>
  99
 100 <div class="page_introduction">
 101 <p>The purpose of this page is to give breeders direct links to
 102 breeder-relevant tools and data on SGN. It is a work in progress and
 103 your feedback or suggestions are welcome to build this into a
 104 comprehensive, easy to use and breeder-friendly resource.</p>
 105
 106 <p>We love feedback!  Please contact <a href="mailto:jv27\@cornell.edu">Joyce van Eck</a>
 107 with suggestions for improvements!</p>
 108 </div>
 109
 110 <div id="icon_nav">
 111 <ul>
 112
 113
 114
 115         <li class="SNPTool"><!-- a href="#" --><img src="/img/breedericonmenu/SNPTool.png" alt="SNP Tool" title="SNP Tool (coming soon)" ><!-- /a -->
 116         <!--
 117                 <ul>
 118             <div class="SNPToolSubMenu">
 119                 <li><a href="#">Test...1</a></li>
 120                 <li><a href="#">Test...2</a></li>
 121                 <li><a href="#">Test...3</a></li>
 122             </div>
 123         </ul>
 124         -->
 125         </li>
 126
 127      <li class="Markers"><a href="/search/direct_search.pl?search=markers"><img src="/img/breedericonmenu/Markers.png" alt="Markers" title="Maps &amp; Markers"  /></a>
 128         <!--
 129                 <ul>
 130             <div class="MarkersSubMenu">
 131                 <li><a href="#">Test...1</a></li>
 132                 <li><a href="#">Test...2</a></li>
 133                 <li><a href="#">Test...3</a></li>
 134             </div>
 135         </ul>
 136         -->
 137         </li>
 138
 139
 140         <li class="Phenotypes"><a href="/search/direct_search.pl?search=phenotypes"><img src="/img/soliconmenu/Phenotypes.png" alt="Traits" title="Traits &amp; Phenotypes" /></a>
 141         <!--
 142                 <ul>
 143             <div class="TraitsSubMenu">
 144                 <li><a href="#">Test...1</a></li>
 145                 <li><a href="#">Test...2</a></li>
 146                 <li><a href="#">Test...3</a></li>
 147             </div>
 148         </ul>
 149         -->
 150         </li>
 151
 152         <li class="QTLTool"><a href="/search/direct_search.pl?search=qtl"><img src="/img/breedericonmenu/QTLTool.png" alt="QTL Tool" title="Access QTL data" /></a>
 153         <!--
 154                 <ul>
 155             <div class="QTLToolSubMenu">
 156                 <li><a href="#">Test...1</a></li>
 157                 <li><a href="#">Test...2</a></li>
 158                 <li><a href="#">Test...3</a></li>
 159             </div>
 160         </ul>
 161         -->
 162         </li>
 163
 164                 <li class="Genes"><a href="/search/direct_search.pl?search=loci"><img src="/img/soliconmenu/Genes.png" alt="Genes" title="Genes" ></a>
 165         <!--
 166                 <ul>
 167             <div class="SNPToolSubMenu">
 168                 <li><a href="#">Test...1</a></li>
 169                 <li><a href="#">Test...2</a></li>
 170                 <li><a href="#">Test...3</a></li>
 171             </div>
 172         </ul>
 173         -->
 174         </li>
 175
 176
 177 </ul>
 178 </div>
 179
 180
 181 <&| /page/info_section.mas, title=>'Tutorials' &>
 182 <ul>
 183   <li>The SGN Breeders Toolbox <a href="http://www.extension.org/pages/61208">webinar</a> by Joyce Van Eck</li>
 184   <li>Plant Breeding and Genomics at the <a href="http://www.extension.org/plant_breeding_genomics">eXtension</a> site</li>
 185   <li>Tomato Genome Browser <a href="http://www.extension.org/article/32485">Webinar</a> presented at the 2010 Tomato Disease Workshop by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
 186   <li>Designing a CAPS Marker From a SNP Using The <a href="http://www.extension.org/article/32361">SGN CAPS Designer</a> by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
 187  <li>A voiceover Powerpoint <a href="http://www.extension.org/pages/60317/sgn-marker-search-tool-tutorial-for-plant-breeders">tutorial for the "Markers" tool </a> by <a href="mailto:merk.9@osu.edu">Heather Merk</a></li>
 188 </ul>
 189 </&>
 190
 191 <&| /page/info_section.mas, title=>'SGN tools' &>
 192 <ul>
 193   <li>Browse the SGN <a href="/search/direct_search.pl?search=markers/">Markers database</a></li>
 194   <li>Browse available controlled vocabularies using the SGN <a href="/tools/onto/">Ontology browser</a></li>
 195   <li>Develop CAPS markers using the <a href="/tools/caps_designer/caps_input.pl">CAPS Designer</a></li>
 196   <li>Check intron locations in transript data using the <a href="/tools/intron_detection/find_introns.pl">Intron Finder</a></li>
 197   <li><a href="/phenome/qtl_form.pl">QTL data submssion</a> and on-the-fly QTL analysis <a href="/search/direct_search.pl?search=qtl/">for Solanaceae traits</a></li>
 198   <li>SGN gene and phenotype <a href="/phenome/">submission guide</a> </li>
 199 </ul>
 200 </&>
 201
 202 <&| /page/info_section.mas, title=>'Tools in development' &>
 203 <ul><li>SNP discovery tool. This will be part of the <a href="https://www.msu.edu/~douchesd/solcapwebpage.htm">SolCAP</a> project.</li></ul>
 204 </&>
 205
 206 <&| /page/info_section.mas, title=>'Links' &>
 207 <ul>
 208 <li><b>Potato</b>
 209  <ul>
 210   <li><a href="/organism/Solanum_tuberosum/genome">Potato genome</a></li>
 211   <li><a href="https://spreadsheets.google.com/spreadsheet/ccc?key=0AglmOi1fE8ZYdEtWaUV3S1FzUjNFVmt4X29fNU9HLXc&hl=en_US">Potato marker list</a> (work in progres by David Douches)</li>
 212  </ul>
 213 </li>
 214 <li><b>Tomato</b>
 215  <ul>
 216   <li><a href="/organism/Solanum_lycopersicum/genome">Tomato genome</a></li>
 217   <li><a href="https://spreadsheets.google.com/spreadsheet/ccc?key=0AglmOi1fE8ZYdE9RU0dlS2h4S29RMk1ZQXk4aUJBOGc&hl=en_US">Tomato resistance genes </a> (by Douglas Maxwell).</li>
 218  </ul>
 219 </li>
 220 <li><a href="http://www.tomatomap.net/">TomatoMap.Net</a> - a site for Tomato Genetics at Ohio State University.</li>
 221 <li><a href="http://solcap.msu.edu/">SolCAP</a> - the official SolCAP website at Michigan State University.</li>
 222 <li><a href="http://www.oardc.ohio-state.edu/vanderknaap/tomato_analyzer.htm">Tomato Analyzer</a> - software for scoring fruit shape and other shapes.</li>
 223 <li><a href="/help/index.pl#submit">Submitting data to SGN</a> - instruction for data submissions to SGN.</li>
 224 </ul>
 225 </&>
 226
 227
 228 <& /util/import_javascript.mas, classes => [qw[ icon_nav ]] &>
 229