mason/people/profile.mas

   1
   2 <%args>
   3 $is_users_profile => undef
   4 $user_roles => undef
   5 $site_name
   6 $sp_person_id
   7 $username
   8 $first_name
   9 $last_name
  10 $populations_list => undef
  11 $solgs_jobs_list => undef
  12 $loci_editor_privileges => undef
  13 $loci_annotations => undef
  14 $user_status => undef
  15 </%args>
  16
  17
  18 <& /page/page_title.mas, title=>"$site_name" &>
  19
  20 <div class="container-fluid">
  21
  22     <div align="center"><b><% $first_name %> <% $last_name %></b></div>
  23     <br/>
  24
  25
  26 % if ($is_users_profile) {
  27
  28     <&| /page/info_section.mas, title=>'General Tools', collapsible=>0, collapsed=>0 &>
  29         <div class="well">
  30             <a href="/solpeople/personal-info.pl?action=edit&sp_person_id=<% $sp_person_id %>">View or update personal (contact and research) information</a><br />
  31             <a href="/user/update">Update account information</a><br />
  32             <a href="/forum/topics.pl">Post to SGN forum</a><br />
  33         </div>
  34     </&>
  35
  36 %   if (exists($user_roles->{'curator'}) || exists($user_roles->{'sequencer'}) ) {
  37
  38     <&| /page/info_section.mas, title=>'Sequencer Tools', collapsible=>0, collapsed=>0, subtitle=>'For Curators and Sequencers' &>
  39         <div class="well">
  40             <a href="/solpeople/attribute_bacs.pl">Attribute a BAC to your chromosome sequencing project</a><br />
  41             <a href="/maps/physical/clone_il_view.pl">View/update BAC IL mapping information (list view)</a><br />
  42             <a href="/maps/physical/clone_reg.pl">View/update all BAC registry info (list view)</a></br>
  43             <a href="/sequencing/tpf.pl">View TPF Files</a><br />
  44             <a href="/sequencing/agp.pl">View AGP Files</a><br />
  45         </div>
  46
  47 %       if (exists($user_roles->{'curator'})) {
  48
  49             <&| /page/info_section.mas, title=>'AGP and TPF File Upload', collapsible=>1, collapsed=>1, subtitle=>'For Curators' &>
  50
  51                 <div class="well">
  52                     <div style="margin-top: 1em">
  53                         <center><h4>Upload Accessioned Golden Path (AGP) File</h4></center>
  54                         <hr>
  55
  56                         <form class="form-horizontal" action="/sequencing/agp.pl" method="post" enctype="multipart/form-data">
  57                             <div class="row">
  58                                 <div class="col-sm-6">
  59                                     <div class="form-group form-group-sm">
  60                                         <label class="col-sm-6 control-label">For Chromosome #: </label>
  61                                         <div class="col-sm-6">
  62                                             <input class="form-control" id="chrnuminput_agp" name="chr" type="text" size="2" maxlength="2" />
  63                                         </div>
  64                                     </div>
  65                                 </div>
  66                                 <div class="col-sm-6">
  67                                     <div class="form-group form-group-sm">
  68                                         <label class="col-sm-2 control-label">File: </label>
  69                                         <div class="col-sm-10">
  70                                             <input type="hidden" name="filetype" value="agp" />
  71                                             <input id="agpinput" type="file" name="agp_file" value="Upload AGP file" />
  72                                         </div>
  73                                     </div>
  74                                 </div>
  75                             </div>
  76                         </form>
  77
  78                         <center><h4>Upload Tiling Path Format (TPF) File</h4></center>
  79                         <hr>
  80
  81                         <form class="form-horizontal" action="/sequencing/tpf.pl" method="post" enctype="multipart/form-data">
  82                             <div class="row">
  83                                 <div class="col-sm-6">
  84                                     <div class="form-group form-group-sm">
  85                                         <label class="col-sm-6 control-label">For Chromosome #: </label>
  86                                         <div class="col-sm-6">
  87                                             <input class="form-control" id="chrnuminput_tpf" name="chr" type="text" size="2" maxlength="2" />
  88                                         </div>
  89                                     </div>
  90                                 </div>
  91                                 <div class="col-sm-6">
  92                                     <div class="form-group form-group-sm">
  93                                         <label class="col-sm-2 control-label">File: </label>
  94                                         <div class="col-sm-10">
  95                                             <input type="hidden" name="filetype" value="tpf" />
  96                                             <input id="tpfinput" type="file" name="tpfinput" value="Upload TPF file" />
  97                                         </div>
  98                                     </div>
  99                                 </div>
 100                             </div>
 101                         </form>
 102
 103                     </div>
 104
 105                 </div>
 106             </&>
 107
 108 %       }
 109
 110     </&>
 111 %   }
 112
 113 %   if (exists($user_roles->{'curator'}) || exists($user_roles->{'sequencer'}) || exists($user_roles->{'submitter'})) {
 114
 115     <&| /page/info_section.mas, title=>'QTL Data Submission', collapsible=>0, collapsed=>0, subtitle=>'For Submitters and up' &>
 116         <div class="well">
 117             <a href="/phenome/qtl_form.pl">Upload and analyse your QTL data</a><br/>
 118         </div>
 119     </&>
 120
 121     <&| /page/info_section.mas, title=>'Populations', collapsible=>0, collapsed=>0, subtitle=>'For Submitters and up' &>
 122         <div class="well">
 123             <% $populations_list %>
 124         </div>
 125     </&>
 126
 127     <&| /page/info_section.mas, title=>'solGS Submitted Analysis Jobs', collapsible=>0, collapsed=>0, subtitle=>'For Submitters and up' &>
 128         <div class="well">
 129             <% $solgs_jobs_list %>
 130         </div>
 131     </&>
 132
 133 %   }
 134
 135 %   if (exists($user_roles->{'curator'}) ) {
 136
 137     <div class="row">
 138         <div class="col-sm-6">
 139             <&| /page/info_section.mas, title=>'Curator Tools', collapsible=>0, collapsed=>0, subtitle=>'For Curators' &>
 140                 <div class="well">
 141                     <a href="/solpeople/admin/crash_test.pl">Test website error handling</a><br />
 142                     <a href="/solpeople/admin/stats.pl">View user stats</a><br />
 143                     <a href="/user/admin/quick_create_account">Create new user account</a><br />
 144                     <a href="/solpeople/admin/create_organization.pl">Create new organization</a>
 145                 </div>
 146             </&>
 147         </div>
 148         <div class="col-sm-6">
 149             <&| /page/info_section.mas, title=>'Literature Mining', collapsible=>0, collapsed=>0, subtitle=>'For Curators' &>
 150                 <div class="well">
 151                     <a href= "/search/pub_search.pl">Search the SGN publication database </a><br />
 152                     <a href= "/search/pub_search.pl?w9b3_assigned_to=<% $sp_person_id %>">See your assigned publications</a><br />
 153                     <a href= "/search/pub_search.pl?w9b3_status=pending">See publications pending curation</a><br />
 154                     <a href= "/chado/fetch_pubmed.pl">Load new publications from PubMed</a><br />
 155                 </div>
 156             </&>
 157         </div>
 158     </div>
 159
 160 %   }
 161
 162 %   if (exists($user_roles->{'curator'}) || exists($user_roles->{'sequencer'}) || exists($user_roles->{'submitter'})) {
 163
 164     <div class="row">
 165         <div class="col-sm-6">
 166             <&| /page/info_section.mas, title=>'Loci Editor', collapsible=>0, collapsed=>0, subtitle=>'For Submitters and up' &>
 167                 <div class="well">
 168                     <% $loci_editor_privileges %>
 169                 </div>
 170             </&>
 171         </div>
 172         <div class="col-sm-6">
 173             <&| /page/info_section.mas, title=>'Annotated Loci', collapsible=>0, collapsed=>0, subtitle=>'For Submitters and up' &>
 174                 <div class="well">
 175                     <% $loci_annotations %>
 176                 </div>
 177             </&>
 178         </div>
 179     </div>
 180 %   }
 181
 182 <&| /page/info_section.mas, title=>'User Status', collapsible=>0, collapsed=>0 &>
 183     <div class="well">
 184         <% $user_status %>
 185     </div>
 186 </&>
 187
 188 % }
 189
 190 </div>