mason/solgs/population/selection_trait.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /solgs/population/selection_trait.mas - displays trait GEBV prediction output for selection population using single trial model.
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15
  16 <%args>
  17
  18
  19 $trait_abbr
  20 $trait_name
  21 $trait_id
  22
  23 $traits_no => ''
  24
  25 $training_pop_id
  26 $training_pop_name
  27 $training_pop_desc
  28 $training_pop_owner
  29 $training_stocks_cnt => ''
  30 $training_markers_cnt => ''
  31
  32 $selection_pop_id => ''
  33 $selection_pop_name => ''
  34 $selection_pop_desc => ''
  35 $selection_pop_owner => ''
  36 $selection_stocks_cnt => ''
  37 $selection_markers_cnt => ''
  38
  39 $owner => ''
  40 $protocol
  41 $top_blups
  42 $blups_download_url
  43 $combined_populations => ''
  44
  45 $data_set_type => ''
  46
  47
  48 </%args>
  49
  50 <%perl>
  51
  52 my $model_link = "<a href=\"/solgs/trait/$trait_id/population/$training_pop_id\">$training_pop_name</a>";
  53
  54
  55 </%perl>
  56
  57   <& /util/import_javascript.mas, classes => ["d3.d3Min", "solGS.solGS","solGS.traitGebvFlot",
  58                                               "flot.flot", "flot.categories",
  59                                               "flot.tooltip", "flot.selection", "flot.navigate",
  60                                               "flot.axisLabels",
  61                                              ]
  62   &>
  63
  64
  65 <& /util/import_css.mas, paths => ['/static/css/solgs/solgs.css'] &>
  66
  67 <& /page/page_title.mas,
  68    title => "GEBVs for $trait_name ($trait_abbr) in $selection_pop_name"
  69 &>
  70
  71 <&| /page/info_section.mas,
  72   collapsible => 1,
  73   collapsed   => 0,
  74   title       => "Selection population summary",
  75   &>
  76
  77  <& summary.mas,
  78     project_id   => $selection_pop_id,
  79     project_name => $selection_pop_name,
  80     project_desc => $selection_pop_desc,
  81     model_link   => $model_link,
  82     stocks_no    => $selection_stocks_cnt,
  83     markers_no   => $selection_markers_cnt,
  84     traits_no    => $traits_no,
  85     trait_name   => $trait_name,
  86     protocol     => $protocol,
  87     owner        => $selection_pop_owner,
  88    combined_populations => $combined_populations,
  89  &>
  90
  91 </&>
  92
  93 <& /solgs/pca/analysis.mas &>
  94
  95 <& /solgs/model/top_blups.mas,
  96    top_blups          => $top_blups,
  97    blups_download_url => $blups_download_url,
  98 &>
  99
 100
 101 <& /solgs/genetic_gain/genetic_gain.mas,
 102    trait_id         => $trait_id,
 103    training_pop_id  => $training_pop_id,
 104    selection_pop_id => $selection_pop_id,
 105 &>
 106
 107
 108 <input type="hidden"  id="model_id" value="<% $training_pop_id %>" />
 109 <input type="hidden"  id="training_pop_id" value="<% $training_pop_id %>" />
 110 <input type="hidden"  id="trait_id" value="<% $trait_id %>" />
 111 <input type="hidden"  id="selection_pop_id" value="<% $selection_pop_id %>" />