mason/solgs/population/training_population.mas

   1 <%args>
   2
   3 $pop_id => ''
   4 $combo_pops_id => ''
   5 $training_pop_id
   6 $training_pop_name
   7 $training_pop_desc
   8 $trial_detail_page => 'NA'
   9 $show_data => 1;
  10 $training_pop_traits_details =>''
  11 $stocks_no
  12 $markers_no
  13 $traits_no
  14 $owner =>''
  15 $protocol_url => ''
  16 $acronym => ''
  17 $genotyping_protocol_id
  18 $data_set_type => ''
  19 $analysis_type => ''
  20
  21 </%args>
  22
  23 <%perl>
  24
  25 if (!$training_pop_id) {$training_pop_id = $combo_pops_id;}
  26 if ($pop_id && !$training_pop_id) {
  27 $training_pop_id = $pop_id;
  28 }
  29
  30 </%perl>
  31
  32
  33 <& /util/import_javascript.mas, classes => ['solGS.solGS', 'solGS.genotypingProtocol', 'save-svg-as-png.saveSvgAsPng'] &>
  34 <& /util/import_css.mas, paths => ['/static/css/solgs/solgs.css'] &>
  35
  36 <br />
  37 <br />
  38
  39 <& /page/page_title.mas,
  40    title => "Select one or more traits from training population \"$training_pop_name\" to build a GS model and predict GEBVs for."
  41 &>
  42
  43 <&| /page/info_section.mas,
  44     collapsible => 1,
  45     collapsed   => 0,
  46     title       => "Training population summary",
  47   &>
  48
  49  <& /solgs/population/summary.mas,
  50     training_pop_id   => $training_pop_id,
  51     training_pop_name => $training_pop_name,
  52     training_pop_desc => $training_pop_desc,
  53     trial_detail_page => $trial_detail_page,
  54     combo_pops_id => $combo_pops_id,
  55     stocks_no    => $stocks_no,
  56     markers_no   => $markers_no,
  57     traits_no    => $traits_no,
  58     owner        => $owner,
  59     protocol_url => $protocol_url,
  60  &>
  61
  62 </&>
  63
  64 % if ($show_data) {
  65 % if ($markers_no > 1) {
  66
  67
  68 <&| /page/info_section.mas,
  69       collapsible => 1,
  70       collapsed   => 0,
  71       title       => "Train model"
  72 &>
  73
  74 <& /solgs/population/traits_list.mas,
  75    training_pop_id    => $training_pop_id,
  76   training_pop_traits_details => $training_pop_traits_details,
  77   data_set_type => $data_set_type,
  78   genotyping_protocol_id => $genotyping_protocol_id,
  79 &>
  80
  81
  82 </&>
  83
  84
  85   <& /solgs/tools/correlation/analysis.mas,
  86      corr_pop_id  => $training_pop_id,
  87      data_set_type => $data_set_type
  88   &>
  89
  90 % unless ($training_pop_id =~ /list|dataset/ || $data_set_type =~ /combined/) {
  91
  92     <& /solgs/tools/anova/analysis.mas,
  93    training_pop_id => $training_pop_id,
  94   &>
  95
  96   <& /tools/heritability/heritability.mas,
  97      pop_id  => $training_pop_id,
  98     &>
  99
 100 %}
 101
 102   <& /solgs/population/trait_acronyms.mas &>
 103   <& /solgs/population/download.mas &>
 104
 105 %} else {
 106
 107 <&| /page/info_section.mas,
 108       collapsible => 1,
 109       collapsed   => 0,
 110       title       => "Genotype Data"
 111 &>
 112
 113   <div id="traits_list_message"  class="message">
 114     <p>There is no genotype data for this population.</p>
 115   </div>
 116
 117 </&>
 118 %}
 119 %} else {
 120
 121 <&| /page/info_section.mas,
 122     collapsible => 1,
 123     collapsed   => 0,
 124     title       => "Data Accessibility",
 125   &>
 126
 127 <p>This is private data.</p>
 128
 129 </&>
 130 %}
 131
 132  <& /solgs/population/hidden_input.mas,
 133       training_pop_id  => $training_pop_id,
 134      training_pop_name => $training_pop_name,
 135      training_pop_desc => $training_pop_desc,
 136      combo_pops_id => $combo_pops_id,
 137      genotyping_protocol_id => $genotyping_protocol_id,
 138      data_set_type => $data_set_type,
 139      analysis_type => $analysis_type,
 140
 141    &>