db/00179/AddFilesStockLinkingTable.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddFilesStockLinkingTable.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run ThisPackageName [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  18
  19 =head1 AUTHOR
  20
  21  Mirella Flores <mrf252@cornell.edu>
  22
  23 =head1 COPYRIGHT & LICENSE
  24
  25 Copyright 2023 Boyce Thompson Institute for Plant Research
  26
  27 This program is free software; you can redistribute it and/or modify
  28 it under the same terms as Perl itself.
  29
  30 =cut
  31
  32
  33 package AddFilesStockLinkingTable;
  34
  35 use Moose;
  36 extends 'CXGN::Metadata::Dbpatch';
  37
  38
  39 has '+description' => ( default => <<'' );
  40 Adds the linking table between files and stock to Phenome
  41
  42 has '+prereq' => (
  43     default => sub {
  44         [],
  45     },
  46   );
  47
  48 sub patch {
  49     my $self=shift;
  50
  51     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  52
  53     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  54
  55     print STDOUT "\nExecuting the SQL commands.\n";
  56
  57     $self->dbh->do(<<EOSQL);
  58 --do your SQL here
  59 --
  60
  61 CREATE TABLE phenome.stock_file (
  62     stock_file_id serial primary key,
  63     stock_id int4 NOT NULL REFERENCES stock ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED,
  64     file_id int4 NOT NULL REFERENCES metadata.md_files ON DELETE CASCADE DEFERRABLE INITIALLY DEFERRED
  65 );
  66
  67 GRANT UPDATE, INSERT, SELECT ON phenome.stock_file TO web_usr;
  68 GRANT USAGE ON phenome.stock_file_stock_file_id_seq to web_usr;
  69
  70 EOSQL
  71
  72 print "You're done!\n";
  73 }
  74
  75
  76 ####
  77 1; #
  78 ####