mason/solgs/population/selection_prediction_detail.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /solgs/population/selection_prediction_detail.mas - displays trait GEBV prediction output for selection population using single trial model.
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15 <%args>
  16
  17 $trait_abbr
  18 $trait_name
  19 $trait_id
  20 $traits_no => ''
  21
  22 $training_pop_id
  23 $training_pop_name
  24 $training_pop_desc => ''
  25 $training_pop_owner => ''
  26 $training_stocks_cnt => ''
  27 $training_markers_cnt => ''
  28 $training_pop_url => ''
  29
  30 $selection_pop_id => ''
  31 $selection_pop_name => ''
  32 $selection_pop_desc => ''
  33 $selection_pop_owner => ''
  34 $selection_stocks_cnt => ''
  35 $selection_markers_cnt => ''
  36
  37 $model_page_url => ''
  38 $owner => 'NA'
  39 $protocol_url => ''
  40 $combined_populations => ''
  41 $combo_pops_id => ''
  42 $genotyping_protocol_id
  43 $data_set_type => ''
  44
  45 </%args>
  46
  47 <%perl>
  48 </%perl>
  49
  50 <& /util/import_javascript.mas, classes => ["solGS.genotypingProtocol"] &>
  51
  52 <& /page/page_title.mas,
  53    title => "GEBVs for $trait_name ($trait_abbr) in $selection_pop_name"
  54 &>
  55
  56 <&| /page/info_section.mas,
  57   collapsible => 1,
  58   collapsed   => 0,
  59   title       => "Selection population summary",
  60   &>
  61
  62  <& /solgs/population/summary.mas,
  63     selection_pop_id   => $selection_pop_id,
  64     selection_pop_name => $selection_pop_name,
  65     selection_pop_desc => $selection_pop_desc,
  66     model_page_url   => $model_page_url,
  67         training_pop_url => $training_pop_url,
  68     stocks_no    => $selection_stocks_cnt,
  69     markers_no   => $selection_markers_cnt,
  70     traits_no    => $traits_no,
  71     trait_name   => $trait_name,
  72     protocol_url => $protocol_url,
  73     owner        => $selection_pop_owner,
  74    combined_populations => $combined_populations,
  75  &>
  76
  77  <& /solgs/population/hidden_input.mas,
  78         training_pop_id  => $training_pop_id,
  79                 training_pop_name => $training_pop_name,
  80                 training_pop_desc => $training_pop_desc,
  81                 selection_pop_id  => $selection_pop_id,
  82                 selection_pop_name => $selection_pop_name,
  83                 selection_pop_desc => $selection_pop_desc,
  84                 genotyping_protocol_id => $genotyping_protocol_id,
  85                 trait_id => $trait_id,
  86         combo_pops_id => $combo_pops_id
  87     &>
  88 </&>
  89
  90 <& /solgs/tools/pca/analysis.mas &>
  91 <& /solgs/population/models/model/gebvs.mas &>
  92
  93 <& /solgs/tools/genetic_gain/genetic_gain.mas,
  94    trait_id         => $trait_id,
  95    training_pop_id  => $training_pop_id,
  96    selection_pop_id => $selection_pop_id,
  97 &>
  98
  99 <& /solgs/population/download.mas &>
 100