db/00121/FixDroneImageryPartialTemplates.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  FixDroneImageryPartialTemplates
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run FixDroneImageryPartialTemplates [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16 This patch fixes the drone imagery partial template storage info to contain a template name and the image_id.
  17 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  18
  19 =head1 AUTHOR
  20
  21
  22 =head1 COPYRIGHT & LICENSE
  23
  24 Copyright 2010 Boyce Thompson Institute for Plant Research
  25
  26 This program is free software; you can redistribute it and/or modify
  27 it under the same terms as Perl itself.
  28
  29 =cut
  30
  31
  32 package FixDroneImageryPartialTemplates;
  33
  34 use Moose;
  35 use Bio::Chado::Schema;
  36 use CXGN::People::Schema;
  37 use Try::Tiny;
  38 use CXGN::Genotype::Search;
  39 use JSON;
  40 extends 'CXGN::Metadata::Dbpatch';
  41
  42
  43 has '+description' => ( default => <<'' );
  44 This patch fixes the drone imagery partial template storage info to contain a template name and the image_id.
  45
  46 has '+prereq' => (
  47         default => sub {
  48         [],
  49     },
  50
  51 );
  52
  53 sub patch {
  54     my $self=shift;
  55
  56     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  57
  58     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  59
  60     print STDOUT "\nExecuting the SQL commands.\n";
  61     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  62     my $people_schema = CXGN::People::Schema->connect( sub { $self->dbh->clone } );
  63
  64     my $manual_plot_polygon_template_partial = SGN::Model::Cvterm->get_cvterm_row($schema, 'drone_run_band_plot_polygons_partial', 'project_property')->cvterm_id();
  65
  66     my $previous_plot_polygons_rs = $schema->resultset('Project::Projectprop')->search({type_id=>$manual_plot_polygon_template_partial});
  67
  68     while (my $p = $previous_plot_polygons_rs->next) {
  69         my @previous_stock_polygons = @{decode_json $p->value};
  70         my @new_stock_polygons;
  71         foreach (@previous_stock_polygons) {
  72             push @new_stock_polygons, {
  73                 template_name => "NA",
  74                 image_id => 0,
  75                 polygon => $_
  76             };
  77         }
  78
  79         my $drone_run_band_plot_polygons = $schema->resultset('Project::Projectprop')->update_or_create({
  80             type_id=>$manual_plot_polygon_template_partial,
  81             project_id=>$p->project_id(),
  82             rank=>0,
  83             value=> encode_json(\@new_stock_polygons)
  84         },
  85         {
  86             key=>'projectprop_c1'
  87         });
  88     }
  89
  90     print "You're done!\n";
  91 }
  92
  93
  94 ####
  95 1; #
  96 ####