Merge pull request #1638 from solgenomics/topic/postcomposed_fix
[sgn.git] / system_cvterms.txt
bloba0216ae9e9f82f00fa302716990b6656cac174f0
1 cv name cvterm name     definition      date    person  dbpatch #       comment
2 calendar        Fertilizer Event                                00052
3 calendar        Genotyping Event                                00052
4 calendar        Harvest Event                           00052
5 calendar        Meeting Event                           00052
6 calendar        Phenotyping Event                               00052
7 calendar        Planning Event                          00052
8 calendar        Planting Event                          00052
9 calendar        Presentation Event                              00052
10 experiment_type pedigree experiment
11 experiment_type cross_experiment                                00052
12 experiment_type field_layout                            00052
13 experiment_type treatment_experiment                            00081
14 experiment_type genotyping_experiment                           00052
15 experiment_type genotyping_layout                               00052
16 experiment_type phenotyping_experiment                          00052
17 experiment_type seedlot_experiment                              00077
18 experiment_type grafting_experiment                             00079
19 genotype_property       igd number
20 genotype_property       infinium array                                  sgn database
21 genotype_property       snp genotyping
22 geolocation_property    geolocation address                             00052
23 geolocation_property    geolocation year                                00052
24 geolocation_property    country_name    From BrAPI      03/27/2017      nm529   00076
25 geolocation_property    country_code    From BrAPI      03/27/2017      nm529   00076
26 geolocation_property    abbreviation    From BrAPI      03/27/2017      nm529   00076
27 geolocation_property    location_type   From BrAPI      03/27/2017      nm529   00076
28 geolocation_property    annual_total_precipitation      From BrAPI      03/27/2017      nm529   00076
29 geolocation_property    continent       From BrAPI      03/27/2017      nm529   00076
30 geolocation_property    annual_mean_temperature From BrAPI      03/27/2017      nm529   00076
31 geolocation_property    adm1    From BrAPI      03/27/2017      nm529   00076
32 geolocation_property    adm2    From BrAPI      03/27/2017      nm529   00076
33 geolocation_property    adm3    From BrAPI      03/27/2017      nm529   00076
34 geolocation_property    local_name      From BrAPI      03/27/2017      nm529   00076
35 geolocation_property    region  From BrAPI      03/27/2017      nm529   00076
36 geolocation_property    alternative_name        From BrAPI      03/27/2017      nm529   00076
37 list_types      seedlots                07/20/2017      nm529   00081
38 list_types      subplots                08/23/2017      nm529   00084
39 list_types      accessions
40 list_types      crosses                         00067
41 list_types      dataset                         00067
42 list_types      locations
43 list_types      locus_ids
44 list_types      numbers                         00067
45 list_types      plots
46 list_types      populations                             00067
47 list_types      traits
48 list_types      trials
49 list_types      unigene_ids
50 list_types      vector_constructs                               00049
51 list_types      years
52 local   date
53 local   months after planting
54 local   operator
55 local   organism_sequencing_metadata
56 local   sp_person_id                            00052
57 local   time
58 local   visible_to_role                         00052
59 nd_experiment_property  cross_name                              00052
60 nd_experiment_property  cross_type                              00052
61 nd_experiment_property  genotyping_project_name                         00052
62 nd_experiment_property  genotyping_user_id                              00052
63 nd_experiment_property  number_of_progeny                               00066
64 nd_experiment_property  number_of_seeds_distributed                             00082
65 organism_property       organism_synonym                                00052
66 organism_property       species authority       From BrAPI      03/27/2017      nm529   00076
67 organism_property       subtaxa From BrAPI      03/27/2017      nm529   00076
68 organism_property       subtaxa authority       From BrAPI      03/27/2017      nm529   00076
69 project_property        breeding_program                                00051
70 project_property        data_agreement
71 project_property        design
72 project_property        genomic selection
73 project_property        project_harvest_date                            00080
74 project_property        marker_count
75 project_property        project_planting_date                           00080
76 project_property        population type
77 project_property        project fertilizer date
78 project_property        project first harvest date                                      sgn database
79 project_property        project harvested plants
80 project_property        project last harvest date                                       sgn database
81 project_property        project location
82 project_property        project sowing date                                     sgn database
83 project_property        project sown plants
84 project_property        project transplanting date                                      sgn database
85 project_property        project year
86 project_property        project_has_plant_entries                               00054
87 project_property        project_has_subplot_entries                             00084
88 project_property        project_has_tissue_sample_entries                               00089
89 project_property        trial_folder
90 project_property        folder_for_trials       For determining if a folder appears on manage trials page       12/6/16 nm529   00071
91 project_property        folder_for_crosses      For determining if a folder appears on manage crosses page      12/6/16 nm529   00071
92 project_property        active  From BrAPI      03/27/2017      nm529   00076
93 project_property        breeding_program_abbreviation   From BrAPI      03/27/2017      nm529   00076
94 project_property        phenotypes_fully_uploaded       To determine when a trial has all phenotypes uploaded   06/09/2017      nm529   00078
95 project_property        trial_layout_json       A json string holding a trial's cached layout   10/12/2017      nm529   00087
96 project_relationship    breeding_program_trial_relationship                             00051
97 project_relationship    trial_treatment_relationship                            00081
98 project_type    Advanced Yeld Trials                            00052
99 project_type    Advanced Yield Trial
100 project_type    Clonal Evaluation
101 project_type    Preliminary Yield Trial
102 project_type    Preliminary Yield Trials                                00052
103 project_type    Regional Trials
104 project_type    Seed Multiplication
105 project_type    Seedling Nursery
106 project_type    Uniform Yield Trial                             00052
107 project_type    Variety Release Trial
108 project_type    crossing_trial  00079
109 project_type    grafting_trial  00079
110 project_type    pollinating_trial       00079
111 project_type    Heterosis                               00082
112 project_type    Genetic Gain                            00082
113 project_type    Health Status                           00082
114 project_type    Storage                         00082
115 project_type    genotyping_trial                00087
116 project_type    phenotyping_trial       00087
117 stock_property  block                           00052
118 stock_property  col_number                              00052
119 stock_property  igd_synonym                             00052
120 stock_property  is a control                            00052
121 stock_property  location_code                           00052
122 stock_property  organization                            00052
123 stock_property  plant_index_number                              00054
124 stock_property  subplot_index_number                            00084
125 stock_property  tissue_sample_index_number                              00089
126 stock_property  plot number                             00052
127 stock_property  plot_geo_json   GeoJSON string for GPS coords polygon of plots. 12/03/2017      nm529   00088
128 stock_property  range                           00052
129 stock_property  replicate                               00052
130 stock_property  row_number                              00052
131 stock_property  stock_synonym                           00046
132 stock_property  T1                              00052
133 stock_property  T2                              00052
134 stock_property  transgenic                              00052
135 stock_property  variety Found in editable_stock_props
136 stock_property  notes   Found in editable_stock_props
137 stock_property  state   Found in editable_stock_props
138 stock_property  accession number        From BrAPI      03/27/2017      nm529   00076
139 stock_property  PUI     From BrAPI      03/27/2017      nm529   00076
140 stock_property  donor   From BrAPI      03/27/2017      nm529   00076
141 stock_property  donor institute From BrAPI      03/27/2017      nm529   00076
142 stock_property  donor PUI       From BrAPI      03/27/2017      nm529   00076
143 stock_property  seed source     From BrAPI      03/27/2017      nm529   00076
144 stock_property  institute code  From BrAPI      03/27/2017      nm529   00076
145 stock_property  institute name  From BrAPI      03/27/2017      nm529   00076
146 stock_property  biological status of accession code     From BrAPI      03/27/2017      nm529   00076
147 stock_property  country of origin       From BrAPI      03/27/2017      nm529   00076
148 stock_property  type of germplasm storage code  From BrAPI      03/27/2017      nm529   00076
149 stock_property  entry number    From BrAPI      03/27/2017      nm529   00076
150 stock_property  acquisition date        From BrAPI      03/27/2017      nm529   00076
151 stock_property  current_count   For keeping current count of seedlot    09/06/2017      nm529   00086
152 stock_property  crossing_metadata_json    00086
153 stock_property  ploidy_level    For indicating ploidy level of accession        12/20/2017      nm529   00088
154 stock_property  genome_structure        For indicating genome structure of accession    12/20/2017      nm529   00088
155 stock_property  introgression_parent    For indicating introgression parent accession name      12/20/2017      nm529   00088
156 stock_property  introgression_backcross_parent  For indicating introgression backcross parent accession name    12/20/2017      nm529   00088
157 stock_property  introgression_map_version       For indicating map version of introgression bp position 12/20/2017      nm529   00088
158 stock_property  introgression_chromosome        For indicating chromosome number of introgression       12/20/2017      nm529   00088
159 stock_property  introgression_start_position_bp For indicating introgression start position in bp       12/20/2017      nm529   00088
160 stock_property  introgression_end_position_bp   For indicating introgression end position in bp 12/20/2017      nm529   00088
161 stock_relationship      cross_relationship                              00052
162 stock_relationship      female_parent                           00052
163 stock_relationship      male_parent                             00052
164 stock_relationship      member_of                               00052
165 stock_relationship      offspring_of                            00052
166 stock_relationship      plant_of                                00052
167 stock_relationship      plot_of                         00052
168 stock_relationship      subplot_of                              00084
169 stock_relationship      plant_of_subplot                                00084
170 stock_relationship      tissue_sample_of                                00052
171 stock_relationship      collection_of                           00077
172 stock_relationship      seed transaction                                00077
173 stock_relationship      rootstock_of                                    00079
174 stock_relationship      scion_of                                        00079
175 stock_relationship  female_plot_of    00086
176 stock_relationship  male_plot_of    00086
177 stock_type      accession                               00052
178 stock_type      backcross population                            00052
179 stock_type      cross                           00052
180 stock_type      f2 population                           00052
181 stock_type      mutant population                               00052
182 stock_type      plant                           00052
183 stock_type      plot                            00052
184 stock_type      population                              00052
185 stock_type      tissue_sample                           00052
186 stock_type      training population                             00052
187 stock_type      vector_construct                                00052
188 stock_type      seedlot                         00077
189 stock_type      subplot                         00084
190 stock_type      grafted_accession               00079
191 trait_property  trait_categories
192 trait_property  trait_default_value
193 trait_property  trait_details
194 trait_property  trait_format
195 trait_property  trait_maximum
196 trait_property  trait_minimum
197 trial_type      genotyping_trial
198 trial_type      phenotyping_trial
199 cvterm_property uri     From BrAPI      03/27/2017      nm529   00076
200 cvterm_property datatype        From BrAPI      03/27/2017      nm529   00076
201 cvterm_property code    From BrAPI      03/27/2017      nm529   00076
202 protocol_property       published date  From BrAPI      03/27/2017      nm529   00076
203 protocol_property       protocol type   From BrAPI      03/27/2017      nm529   00076
204 protocol_property       protocol unit   From BrAPI      03/27/2017      nm529   00076
205 protocol_property       protocol comment        From BrAPI      03/27/2017      nm529   00076
206 composable_cvs  trait_ontology          05/01/2017              00073
207 composable_cvs  composed_trait_ontology         05/01/2017              00073
208 composable_cvs  object_ontology         05/01/2017              00073
209 composable_cvs  attribute_ontology              05/01/2017              00073
210 composable_cvs  method_ontology         05/01/2017              00073
211 composable_cvs  unit_ontology           05/01/2017              00073
212 composable_cvs  time_ontology           05/01/2017              00073
213 project_design?                                                 suggested to move the trial design names from projectprop.value to projectprop.type_id
214 phenotype_property  phenotype_outlier   suppressed phenotype measurement    01/04/2018  aco46   00089