cgi-bin/content/phenotype_submissions.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new('Phenotype submission format','Naama');
   4 $page->header("SGN Phenotype Submission Guidelines", "SGN phenotype submission guidelines");
   5
   6 print<<END_HEREDOC;
   7
   8 <p>
   9 SGN hosts a <a href="/search/direct_search.pl?search=phenotypes/">phenotype database</a> for displaying individual plant accessions scored for phenotypic attributes and more (links to genetic maps, QTLs, locus associations).<br>
  10 Each accession is associated with a population, such as introgression lines, mutants, and mapping populations.<br>
  11     SGN users may upload <a href="/stock/0/new">new accessions or populations</a> using our web interface (you will be prompt to login first, and an SGN submitter account is required. Please <a href="mailto:sgn-feedback\@solgenomics.net">contact us</a> for for obtaining submitter privileges). <br/>
  12 For large datasets we accept batch submissions of files with the following details:
  13
  14 <ul>
  15 <li>Description of your population</li>
  16 <li>Organism</li>
  17 <li>contact person (We will create a new submitter account for you if you do not have one already)</li>
  18 </ul>
  19 <pre>
  20        <b>accession_id  description</b>
  21        accession1    free-text description of the phenotype
  22        accession2    description goes here
  23        .
  24        .
  25 </pre>
  26
  27 We will upload your accessions and have the contact person assigned as the owner of all information.<br><br>
  28
  29 You may also submit any number of images for each one of your accession. Images can be added or deleted from the database at any time.
  30 For a large number of images please <a href="mailto:sgn-feedback\@solgenomics.net">contact us</a> for mailing a CD or uploading your images to the SGN ftp site. If your filenames do not include the accession name (usually as a prefix, e.g. myAccession1_leaf.jpg) We also require a file with information on your images:
  31
  32 <pre>
  33   filename1   accession1
  34   filename2   accession1
  35   filename3   accession2
  36   .
  37   .
  38   .
  39 </pre>
  40
  41
  42 If you have used <a href="/tools/onto/">'Solanaceae Phenotype'</a> terms for describing your accessions you can submit the annotation in the following format:
  43
  44 <pre>
  45     accession1  SP000000X
  46     accession1  SP000000Y
  47     accession1  SP00000ZZ
  48     accession2  SP00000XY
  49     .
  50     .
  51     .
  52 </pre>
  53
  54
  55 <b>We will gladly add information and features to the phenotype database <a href="mailto:sgn-feedback\@solgenomics.net">upon request!</a> </b>
  56
  57 END_HEREDOC
  58 $page->footer();