Merge branch 'master' into topic/simple_image_upload
[sgn.git] / cgi-bin / maps / lpimp_ibl / index.pl
blobe57b89e11b6f2926ce985522cfc329c8e51979bf
1 use strict;
2 use CXGN::Page;
3 my $page=CXGN::Page->new("index.html","html2pl converter");
4 $page->header("Lycopersicon Pimpinellifolium Inbred Backcross
5 Lines.");
6 print<<END_HEREDOC;
8 <center>
11 <table summary="" width="720" cellpadding="0" cellspacing="0"
12 border="0">
13 <tr>
14 <td>
15 <center>
16 <h2>Lycopersicon pimpinellifolium Inbred Backcross
17 Lines (IBLs)</h2>
18 </center>
20 <p>A set of 196 inbred-backcross lines (IBLs) (BC2F6) was
21 generated from a population which had been developed as
22 part of an AB-QTL strategy to identify useful alleles
23 from a small red fruited wild relative of tomato,
24 Lycopersicon pimpinellifolium LA1589 (Grandillo and
25 Tanksley, 1996; Tanksley et al. 1996). The population has
26 been mapped with 127 markers covering the tomato genome
27 (Doganlar et al 2002). Each of the IBL contains more than
28 one introgressed region from L. pimpinellifolium in the
29 L. esculentum cv. E6203 background. The IBLs are a
30 permanent mapping resource that can be used by tomato
31 geneticists and breeders for mapping, gene discovery and
32 breeding.</p>
34 <p>A consensus map was constructed from the three studies
35 that used populations derived from the original L.
36 esculentum cv. E6203 x L. pimpinellifolium LA1589 cross
37 Grandillo and Tanksley, 1996; Tanksley et al. 1996,
38 Doganlar et al. 2002). The map contains 151 markers
39 covering the entire tomato genome, cM values are based on
40 the map of Tanksley et al. (1996).</p>
42 <p>To improve the utility of the IBL population, a subset
43 of 100 lines giving the most uniform genome coverage and
44 map resolution was selected using a randomized greedy
45 algorithm as implemented in the software package MapPop
46 (Vision et al. 2001). The seed for the selected subset of
47 100 IBLs will be available through the <a href=
48 "http://tgrc.ucdavis.edu">Tomato Genetics
49 Resource Center</a>,
50 TGRC, Davis, CA).</p>
52 <h2>Map of Lycopersicon Pimpinellifolium LA1589</h2>
54 <p>The following links display the individual chromosomes
55 of this map.<br />
56 Click on the names of individual markers to connect to
57 that marker's entry in the SGN database.</p>
59 <ul>
60 <li><a href="chromosome1.pl">Chromosome1</a></li>
62 <li><a href="chromosome2.pl">Chromosome2</a></li>
64 <li><a href="chromosome3.pl">Chromosome3</a></li>
66 <li><a href="chromosome4.pl">Chromosome4</a></li>
68 <li><a href="chromosome5.pl">Chromosome5</a></li>
70 <li><a href="chromosome6.pl">Chromosome6</a></li>
72 <li><a href="chromosome7.pl">Chromosome7</a></li>
74 <li><a href="chromosome8.pl">Chromosome8</a></li>
76 <li><a href="chromosome9.pl">Chromosome9</a></li>
78 <li><a href="chromosome10.pl">Chromosome10</a></li>
80 <li><a href="chromosome11.pl">Chromosome11</a></li>
82 <li><a href="chromosome12.pl">Chromosome12</a></li>
83 </ul>
85 <h3>IBL References</h3>
87 <p>Doganlar S, Frary A, Ku HM and Tanksley SD (submitted)
88 <em>Mapping Quantitative Trait Loci in Inbred Backcross
89 Lines of Lycopersicon pimpinellifolium (LA1589).</em></p>
91 <p>Tanksley SD, Grandillo S, Fulton TM, Zamir D, Eshed Y,
92 Petiard V, Lopez J and Beck-Bunn T (1996) <em>Advanced
93 backcross QTL analysis in a cross between an elite
94 processing line of tomato and its wild relative L.
95 pimpinellifolium.</em> Theor Appl Genet 92: 213-224.</p>
97 <p>Grandillo S and Tanksley SD (1996) <em>QTL analysis of
98 horticultural traits differentiating the cultivated
99 tomato from the closely related species Lycopersicon
100 pimpinellifolium.</em> Theor Appl Genet 92: 935-951.</p>
102 <p>Vision TJ, Brown DG, Shmoys DB, Durret, R.T and
103 Tanksley SD (2000) <em>Selective mapping: A strategy for
104 optimizing the costruction of high-density linkage
105 maps.</em> Genetics 155: 407-420.</p>
106 </td>
107 </tr>
108 </table>
110 </center>
111 END_HEREDOC
112 $page->footer();