Merge pull request #1312 from solgenomics/topic/cross_wishlist
[sgn.git] / system_cvterms.txt
blob91723c7d47c57c70e20fc48c5fb9897040c3b4e9
1 cv name cvterm name     definition      date    person  dbpatch #       comment
2 calendar        Fertilizer Event                                00052   
3 calendar        Genotyping Event                                00052   
4 calendar        Harvest Event                           00052   
5 calendar        Meeting Event                           00052   
6 calendar        Phenotyping Event                               00052   
7 calendar        Planning Event                          00052   
8 calendar        Planting Event                          00052   
9 calendar        Presentation Event                              00052   
10 experiment_type pedigree experiment                                     
11 experiment_type cross_experiment                                00052   
12 experiment_type field_layout                            00052   
13 experiment_type treatment_experiment                            00081   
14 experiment_type genotyping_experiment                           00052   
15 experiment_type genotyping_layout                               00052   
16 experiment_type phenotyping_experiment                          00052   
17 experiment_type seedlot_experiment                              00077   
18 experiment_type grafting_experiment                             00079
19 genotype_property       igd number                                      
20 genotype_property       infinium array                                  sgn database
21 genotype_property       snp genotyping                                  
22 geolocation_property    geolocation address                             00052   
23 geolocation_property    geolocation year                                00052   
24 geolocation_property    country_name    From BrAPI      03/27/2017      nm529   00076   
25 geolocation_property    country_code    From BrAPI      03/27/2017      nm529   00076   
26 geolocation_property    abbreviation    From BrAPI      03/27/2017      nm529   00076   
27 geolocation_property    location_type   From BrAPI      03/27/2017      nm529   00076   
28 geolocation_property    annual_total_precipitation      From BrAPI      03/27/2017      nm529   00076   
29 geolocation_property    continent       From BrAPI      03/27/2017      nm529   00076   
30 geolocation_property    annual_mean_temperature From BrAPI      03/27/2017      nm529   00076   
31 geolocation_property    adm1    From BrAPI      03/27/2017      nm529   00076   
32 geolocation_property    adm2    From BrAPI      03/27/2017      nm529   00076   
33 geolocation_property    adm3    From BrAPI      03/27/2017      nm529   00076   
34 geolocation_property    local_name      From BrAPI      03/27/2017      nm529   00076   
35 geolocation_property    region  From BrAPI      03/27/2017      nm529   00076   
36 geolocation_property    alternative_name        From BrAPI      03/27/2017      nm529   00076   
37 list_types      seedlots                07/20/2017      nm529   00081   
38 list_types      subplots                08/23/2017      nm529   00084   
39 list_types      accessions                                      
40 list_types      crosses                         00067   
41 list_types      dataset                         00067   
42 list_types      locations                                       
43 list_types      locus_ids                                       
44 list_types      numbers                         00067   
45 list_types      plots                                   
46 list_types      populations                             00067   
47 list_types      traits                                  
48 list_types      trials                                  
49 list_types      unigene_ids                                     
50 list_types      vector_constructs                               00049   
51 list_types      years                                   
52 local   date                                    
53 local   months after planting                                   
54 local   operator                                        
55 local   organism_sequencing_metadata                                    
56 local   sp_person_id                            00052   
57 local   time                                    
58 local   visible_to_role                         00052   
59 nd_experiment_property  cross_name                              00052   
60 nd_experiment_property  cross_type                              00052   
61 nd_experiment_property  date_of_embryo_rescue                           00066   
62 nd_experiment_property  date_of_harvest                         00066   
63 nd_experiment_property  date_of_pollination                             00066   
64 nd_experiment_property  date_of_seed_extraction                         00066   
65 nd_experiment_property  days_from_extraction_to_embryo_rescue                           00066   
66 nd_experiment_property  days_from_harvest_to_extraction                         00066   
67 nd_experiment_property  days_to_maturity                                00066   
68 nd_experiment_property  genotyping_project_name                         00052   
69 nd_experiment_property  genotyping_user_id                              00052   
70 nd_experiment_property  number_of_embryos_contaminated                                  
71 nd_experiment_property  number_of_embryos_germinated                            00066   
72 nd_experiment_property  number_of_embryos_rescued                               00066   
73 nd_experiment_property  number_of_flowers                               00052   
74 nd_experiment_property  number_of_fruits                                        
75 nd_experiment_property  number_of_nonviable_seeds                               00066   
76 nd_experiment_property  number_of_progeny                               00066   
77 nd_experiment_property  number_of_seedlings_transplanted                                        
78 nd_experiment_property  number_of_seeds                         00052   
79 nd_experiment_property  number_of_seeds_extracted                               00066   
80 nd_experiment_property  number_of_seeds_germinated                              00066   
81 nd_experiment_property  number_of_seeds_planted                         00066   
82 nd_experiment_property  number_of_viable_seeds                          00066   
83 nd_experiment_property  number_of_seeds_distributed                             00082
84 organism_property       organism_synonym                                00052   
85 organism_property       species authority       From BrAPI      03/27/2017      nm529   00076   
86 organism_property       subtaxa From BrAPI      03/27/2017      nm529   00076   
87 organism_property       subtaxa authority       From BrAPI      03/27/2017      nm529   00076   
88 project_property        breeding_program                                00051   
89 project_property        data_agreement                                  
90 project_property        design                                  
91 project_property        genomic selection                                       
92 project_property        project_harvest_date                            00080   
93 project_property        marker_count                                    
94 project_property        project_planting_date                           00080   
95 project_property        population type                                 
96 project_property        project fertilizer date                                 
97 project_property        project first harvest date                                      sgn database
98 project_property        project harvested plants                                        
99 project_property        project last harvest date                                       sgn database
100 project_property        project location                                        
101 project_property        project sowing date                                     sgn database
102 project_property        project sown plants                                     
103 project_property        project transplanting date                                      sgn database
104 project_property        project year                                    
105 project_property        project_has_plant_entries                               00054   
106 project_property        project_has_subplot_entries                             00084   
107 project_property        trial_folder                                    
108 project_property        folder_for_trials       For determining if a folder appears on manage trials page       12/6/16 nm529   00071   
109 project_property        folder_for_crosses      For determining if a folder appears on manage crosses page      12/6/16 nm529   00071   
110 project_property        active  From BrAPI      03/27/2017      nm529   00076   
111 project_property        breeding_program_abbreviation   From BrAPI      03/27/2017      nm529   00076   
112 project_property        phenotypes_fully_uploaded       To determine when a trial has all phenotypes uploaded   06/09/2017      nm529   00078   
113 project_relationship    breeding_program_trial_relationship                             00051   
114 project_relationship    trial_treatment_relationship                            00081   
115 project_type    Advanced Yeld Trials                            00052   
116 project_type    Advanced Yield Trial                                    
117 project_type    Clonal Evaluation                                       
118 project_type    Preliminary Yield Trial                                 
119 project_type    Preliminary Yield Trials                                00052   
120 project_type    Regional Trials                                 
121 project_type    Seed Multiplication                                     
122 project_type    Seedling Nursery                                        
123 project_type    Uniform Yield Trial                             00052   
124 project_type    Variety Release Trial                                   
125 project_type    crossing_trial  00079
126 project_type    grafting_trial  00079
127 project_type    pollinating_trial       00079
128 project_type    Heterosis                               00082
129 project_type    Genetic Gain                            00082   
130 project_type    Health Status                           00082   
131 project_type    Storage                         00082           
132 stock_property  block                           00052   
133 stock_property  col_number                              00052   
134 stock_property  igd_synonym                             00052   
135 stock_property  is a control                            00052   
136 stock_property  location_code                           00052   
137 stock_property  organization                            00052   
138 stock_property  plant_index_number                              00054   
139 stock_property  subplot_index_number                            00084   
140 stock_property  plot number                             00052   
141 stock_property  range                           00052   
142 stock_property  replicate                               00052   
143 stock_property  row_number                              00052   
144 stock_property  stock_synonym                           00046   
145 stock_property  T1                              00052   
146 stock_property  T2                              00052   
147 stock_property  transgenic                              00052   
148 stock_property  variety Found in editable_stock_props                           
149 stock_property  notes   Found in editable_stock_props                           
150 stock_property  state   Found in editable_stock_props                           
151 stock_property  accession number        From BrAPI      03/27/2017      nm529   00076   
152 stock_property  PUI     From BrAPI      03/27/2017      nm529   00076   
153 stock_property  donor   From BrAPI      03/27/2017      nm529   00076   
154 stock_property  donor institute From BrAPI      03/27/2017      nm529   00076   
155 stock_property  donor PUI       From BrAPI      03/27/2017      nm529   00076   
156 stock_property  seed source     From BrAPI      03/27/2017      nm529   00076   
157 stock_property  institute code  From BrAPI      03/27/2017      nm529   00076   
158 stock_property  institute name  From BrAPI      03/27/2017      nm529   00076   
159 stock_property  biological status of accession code     From BrAPI      03/27/2017      nm529   00076   
160 stock_property  country of origin       From BrAPI      03/27/2017      nm529   00076   
161 stock_property  type of germplasm storage code  From BrAPI      03/27/2017      nm529   00076   
162 stock_property  entry number    From BrAPI      03/27/2017      nm529   00076   
163 stock_property  acquisition date        From BrAPI      03/27/2017      nm529   00076   
164 stock_relationship      cross_relationship                              00052   
165 stock_relationship      female_parent                           00052   
166 stock_relationship      male_parent                             00052   
167 stock_relationship      member_of                               00052   
168 stock_relationship      offspring_of                            00052   
169 stock_relationship      plant_of                                00052   
170 stock_relationship      plot_of                         00052   
171 stock_relationship      subplot_of                              00084   
172 stock_relationship      plant_of_subplot                                00084   
173 stock_relationship      tissue_sample_of                                00052   
174 stock_relationship      collection_of                           00077   
175 stock_relationship      seed transaction                                00077   
176 stock_relationship      rootstock_of                                    00079
177 stock_relationship      scion_of                                        00079
178 stock_type      accession                               00052   
179 stock_type      backcross population                            00052   
180 stock_type      cross                           00052   
181 stock_type      f2 population                           00052   
182 stock_type      mutant population                               00052   
183 stock_type      plant                           00052   
184 stock_type      plot                            00052   
185 stock_type      population                              00052   
186 stock_type      tissue_sample                           00052   
187 stock_type      training population                             00052   
188 stock_type      vector_construct                                00052   
189 stock_type      seedlot                         00077   
190 stock_type      subplot                         00084   
191 stock_type      grafted_accession               00079
192 trait_property  trait_categories                                        
193 trait_property  trait_default_value                                     
194 trait_property  trait_details                                   
195 trait_property  trait_format                                    
196 trait_property  trait_maximum                                   
197 trait_property  trait_minimum                                   
198 trial_type      crossing_trial                                  
199 trial_type      genotyping_trial                                        
200 trial_type      phenotyping_trial                                       
201 cvterm_property uri     From BrAPI      03/27/2017      nm529   00076   
202 cvterm_property datatype        From BrAPI      03/27/2017      nm529   00076   
203 cvterm_property code    From BrAPI      03/27/2017      nm529   00076   
204 protocol_property       published date  From BrAPI      03/27/2017      nm529   00076   
205 protocol_property       protocol type   From BrAPI      03/27/2017      nm529   00076   
206 protocol_property       protocol unit   From BrAPI      03/27/2017      nm529   00076   
207 protocol_property       protocol comment        From BrAPI      03/27/2017      nm529   00076   
208 composable_cvs  trait_ontology          05/01/2017              00073   
209 composable_cvs  composed_trait_ontology         05/01/2017              00073   
210 composable_cvs  object_ontology         05/01/2017              00073   
211 composable_cvs  attribute_ontology              05/01/2017              00073   
212 composable_cvs  method_ontology         05/01/2017              00073   
213 composable_cvs  unit_ontology           05/01/2017              00073   
214 composable_cvs  time_ontology           05/01/2017              00073   
215 project_design?                                                 suggested to move the trial design names from projectprop.value to projectprop.type_id