include needed file params in instantiation of trial design obj
[sgn.git] / ontology / sugarkelp_seedlot_maintenance_events.obo
blob2b143cf4e867c0ce0c14850d3ddbf3f452414fe3
1 format-version: 1.2
2 date: 07:07:2021 11:00
3 saved-by: djw64
4 remark: The seedlot maintenance event ontology for sugar kelp
5 default-namespace: seedlot_maintenance_event
6 ontology: SEEDLOT_MAINTENANCE
11 [Term]
12 id: SEEDLOT_MAINTENANCE:0000000
13 name: Seedlot Maintenance Events
18 ! ============================
19 ! CATEGORIES
20 ! ============================
23 [Term]
24 id: SEEDLOT_MAINTENANCE:0000001
25 name: Actions
26 def: "Actions taken for proper gametophyte maintenance" []
27 is_a: SEEDLOT_MAINTENANCE:0000000
30 [Term]
31 id: SEEDLOT_MAINTENANCE:0000002
32 name: Observations
33 def: "Observations made while performing gametophyte maintenance" []
34 is_a: SEEDLOT_MAINTENANCE:0000000
39 ! ============================
40 ! ACTIONS
41 ! ============================
44 [Term]
45 id: SEEDLOT_MAINTENANCE:0001001
46 name: Water Change
47 def: "" []
48 is_a: SEEDLOT_MAINTENANCE:0000001
51 [Term]
52 id: SEEDLOT_MAINTENANCE:0001002
53 name: Blended
54 def: "" []
55 is_a: SEEDLOT_MAINTENANCE:0000001
58 [Term]
59 id: SEEDLOT_MAINTENANCE:0001003
60 name: Container Scraped
61 def: "" []
62 is_a: SEEDLOT_MAINTENANCE:0000001
67 ! ============================
68 ! OBSERVATIONS
69 ! ============================
71 [Term]
72 id: SEEDLOT_MAINTENANCE:0002001
73 name: Light Intensity
74 def: "" []
75 is_a: SEEDLOT_MAINTENANCE:0000002
77 [Term]
78 id: SEEDLOT_MAINTENANCE:0002002
79 name: Light Color
80 def: "" []
81 is_a: SEEDLOT_MAINTENANCE:0000002
83 [Term]
84 id: SEEDLOT_MAINTENANCE:0002003
85 name: Container Size
86 def: "" []
87 is_a: SEEDLOT_MAINTENANCE:0000002
89 [Term]
90 id: SEEDLOT_MAINTENANCE:0002004
91 name: Form
92 def: "" []
93 is_a: SEEDLOT_MAINTENANCE:0000002
95 [Term]
96 id: SEEDLOT_MAINTENANCE:0002005
97 name: Biomass
98 def: "Biomass rating relative to container size.  <a href=\"/static_content/references/biomass.pdf\" target=\"_blank\">Biomass Reference Sheet.</a>" []
99 is_a: SEEDLOT_MAINTENANCE:0000002
101 [Term]
102 id: SEEDLOT_MAINTENANCE:0002006
103 name: Health
104 def: "General health assessment for GP culture. Take into account color (1,2, or 3 = unhealthy; 4,5,6, or 7 = healthy) and contaminants." []
105 is_a: SEEDLOT_MAINTENANCE:0000002
107 [Term]
108 id: SEEDLOT_MAINTENANCE:0002007
109 name: Color
110 def: "Gametophyte color rating on a 1-7 scale.  <a href=\"/static_content/references/color.pdf\" target=\"_blank\">Culture Color Reference Sheet.</a>" []
111 is_a: SEEDLOT_MAINTENANCE:0000002
113 [Term]
114 id: SEEDLOT_MAINTENANCE:0002008
115 name: Stickiness
116 def: "General stickiness assessment of GP culture. Sticky GPs will remain attached to glass even after swirling the culture." []
117 is_a: SEEDLOT_MAINTENANCE:0000002
119 [Term]
120 id: SEEDLOT_MAINTENANCE:0002009
121 name: Clumping
122 def: "General clumping assessment of GP culture. GPs that exhibit clumping will appear to be “grouped” in the bottom of the flask." []
123 is_a: SEEDLOT_MAINTENANCE:0000002
125 [Term]
126 id: SEEDLOT_MAINTENANCE:0002010
127 name: Contaminants
128 def: "" []
129 is_a: SEEDLOT_MAINTENANCE:0000002
131 [Term]
132 id: SEEDLOT_MAINTENANCE:0002011
133 name: Additional Notes
134 def: "Any additional notes, usually concerning culture termination or partial use for an experiment" []
135 is_a: SEEDLOT_MAINTENANCE:0000002
140 ! ============================
141 ! VALUES
142 ! ============================
144 [Term]
145 id: SEEDLOT_MAINTENANCE:0010001
146 name: Successful
147 def: "" []
148 is_a: SEEDLOT_MAINTENANCE:0001001
149 is_a: SEEDLOT_MAINTENANCE:0001002
150 is_a: SEEDLOT_MAINTENANCE:0001003
152 [Term]
153 id: SEEDLOT_MAINTENANCE:0010002
154 name: Unsuccessful
155 def: "" []
156 is_a: SEEDLOT_MAINTENANCE:0001001
157 is_a: SEEDLOT_MAINTENANCE:0001002
158 is_a: SEEDLOT_MAINTENANCE:0001003
160 [Term]
161 id: SEEDLOT_MAINTENANCE:0010003
162 name: <10
163 def: "" []
164 is_a: SEEDLOT_MAINTENANCE:0002001
166 [Term]
167 id: SEEDLOT_MAINTENANCE:0010004
168 name: 20
169 def: "" []
170 is_a: SEEDLOT_MAINTENANCE:0002001
172 [Term]
173 id: SEEDLOT_MAINTENANCE:0010005
174 name: 30-45
175 def: "" []
176 is_a: SEEDLOT_MAINTENANCE:0002001
178 [Term]
179 id: SEEDLOT_MAINTENANCE:0010006
180 name: 50-75
181 def: "" []
182 is_a: SEEDLOT_MAINTENANCE:0002001
184 [Term]
185 id: SEEDLOT_MAINTENANCE:0010007
186 name: red
187 def: "" []
188 is_a: SEEDLOT_MAINTENANCE:0002002
190 [Term]
191 id: SEEDLOT_MAINTENANCE:0010008
192 name: white
193 def: "" []
194 is_a: SEEDLOT_MAINTENANCE:0002002
196 [Term]
197 id: SEEDLOT_MAINTENANCE:0010009
198 name: 1 L
199 def: "" []
200 is_a: SEEDLOT_MAINTENANCE:0002003
202 [Term]
203 id: SEEDLOT_MAINTENANCE:0010010
204 name: 500 mL
205 def: "" []
206 is_a: SEEDLOT_MAINTENANCE:0002003
208 [Term]
209 id: SEEDLOT_MAINTENANCE:0010011
210 name: 250 mL
211 def: "" []
212 is_a: SEEDLOT_MAINTENANCE:0002003
214 [Term]
215 id: SEEDLOT_MAINTENANCE:0010012
216 name: 125 mL
217 def: "" []
218 is_a: SEEDLOT_MAINTENANCE:0002003
220 [Term]
221 id: SEEDLOT_MAINTENANCE:0010013
222 name: vial
223 def: "" []
224 is_a: SEEDLOT_MAINTENANCE:0002003
226 [Term]
227 id: SEEDLOT_MAINTENANCE:0010026
228 name: Backup vial
229 def: "" []
230 is_a: SEEDLOT_MAINTENANCE:0002004
232 [Term]
233 id: SEEDLOT_MAINTENANCE:0010027
234 name: Flask
235 def: "" []
236 is_a: SEEDLOT_MAINTENANCE:0002004
238 [Term]
239 id: SEEDLOT_MAINTENANCE:0010028
240 name: Backup vial sibling
241 def: "" []
242 is_a: SEEDLOT_MAINTENANCE:0002004
244 [Term]
245 id: SEEDLOT_MAINTENANCE:0010014
246 name: high
247 def: "" []
248 is_a: SEEDLOT_MAINTENANCE:0002005
250 [Term]
251 id: SEEDLOT_MAINTENANCE:0010015
252 name: medium
253 def: "" []
254 is_a: SEEDLOT_MAINTENANCE:0002005
256 [Term]
257 id: SEEDLOT_MAINTENANCE:0010016
258 name: low
259 def: "" []
260 is_a: SEEDLOT_MAINTENANCE:0002005
262 [Term]
263 id: SEEDLOT_MAINTENANCE:0010017
264 name: healthy
265 def: "" []
266 is_a: SEEDLOT_MAINTENANCE:0002006
268 [Term]
269 id: SEEDLOT_MAINTENANCE:0010018
270 name: not healthy
271 def: "" []
272 is_a: SEEDLOT_MAINTENANCE:0002006
274 [Term]
275 id: SEEDLOT_MAINTENANCE:0010019
276 name: 1
277 def: "" []
278 is_a: SEEDLOT_MAINTENANCE:0002007
280 [Term]
281 id: SEEDLOT_MAINTENANCE:0010020
282 name: 2
283 def: "" []
284 is_a: SEEDLOT_MAINTENANCE:0002007
286 [Term]
287 id: SEEDLOT_MAINTENANCE:0010021
288 name: 3
289 def: "" []
290 is_a: SEEDLOT_MAINTENANCE:0002007
292 [Term]
293 id: SEEDLOT_MAINTENANCE:0010022
294 name: 4
295 def: "" []
296 is_a: SEEDLOT_MAINTENANCE:0002007
298 [Term]
299 id: SEEDLOT_MAINTENANCE:0010023
300 name: 5
301 def: "" []
302 is_a: SEEDLOT_MAINTENANCE:0002007
304 [Term]
305 id: SEEDLOT_MAINTENANCE:0010024
306 name: 6
307 def: "" []
308 is_a: SEEDLOT_MAINTENANCE:0002007
310 [Term]
311 id: SEEDLOT_MAINTENANCE:0010025
312 name: 7
313 def: "" []
314 is_a: SEEDLOT_MAINTENANCE:0002007
316 [Term]
317 id: SEEDLOT_MAINTENANCE:0010037
318 name: yes
319 def: "" []
320 is_a: SEEDLOT_MAINTENANCE:0002008
321 is_a: SEEDLOT_MAINTENANCE:0002009
323 [Term]
324 id: SEEDLOT_MAINTENANCE:0010038
325 name: no
326 def: "" []
327 is_a: SEEDLOT_MAINTENANCE:0002008
328 is_a: SEEDLOT_MAINTENANCE:0002009
330 [Term]
331 id: SEEDLOT_MAINTENANCE:0010029
332 name: green
333 def: "" []
334 is_a: SEEDLOT_MAINTENANCE:0002010
336 [Term]
337 id: SEEDLOT_MAINTENANCE:0010030
338 name: bacteria
339 def: "" []
340 is_a: SEEDLOT_MAINTENANCE:0002010
342 [Term]
343 id: SEEDLOT_MAINTENANCE:0010031
344 name: other
345 def: "" []
346 is_a: SEEDLOT_MAINTENANCE:0002010
348 [Term]
349 id: SEEDLOT_MAINTENANCE:0010032
350 name: all
351 def: "" []
352 is_a: SEEDLOT_MAINTENANCE:0002010
354 [Term]
355 id: SEEDLOT_MAINTENANCE:0010033
356 name: green and bacteria
357 def: "" []
358 is_a: SEEDLOT_MAINTENANCE:0002010
360 [Term]
361 id: SEEDLOT_MAINTENANCE:0010034
362 name: green and other
363 def: "" []
364 is_a: SEEDLOT_MAINTENANCE:0002010
366 [Term]
367 id: SEEDLOT_MAINTENANCE:0010035
368 name: bacteria and other
369 def: "" []
370 is_a: SEEDLOT_MAINTENANCE:0002010
372 [Term]
373 id: SEEDLOT_MAINTENANCE:0010036
374 name: none
375 def: "" []
376 is_a: SEEDLOT_MAINTENANCE:0002010