db/00067/AddNewListTypes.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  AddNewListTypes.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run AddNewListTypes [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This is a test dummy patch.
  18 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  19
  20 =head1 AUTHOR
  21
  22  Bryan Ellerbrock <bje24@cornell.edu>
  23
  24 =head1 COPYRIGHT & LICENSE
  25
  26 Copyright 2010 Boyce Thompson Institute for Plant Research
  27
  28 This program is free software; you can redistribute it and/or modify
  29 it under the same terms as Perl itself.
  30
  31 =cut
  32
  33
  34 package AddNewListTypes;
  35
  36 use Moose;
  37 use Bio::Chado::Schema;
  38 use Try::Tiny;
  39 extends 'CXGN::Metadata::Dbpatch';
  40
  41
  42 has '+description' => ( default => <<'' );
  43 This patch will create new cvterms 'dataset', 'crosses', 'populations', and 'numeric' in the 'list_type' cv.
  44
  45
  46 sub patch {
  47     my $self=shift;
  48
  49     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  50
  51     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  52
  53     print STDOUT "\nExecuting the SQL commands.\n";
  54
  55     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  56
  57     my $coderef = sub {
  58
  59         my $dataset_list_type_cvterm = $schema->resultset("Cv::Cvterm")->create_with({
  60             name => 'dataset',
  61       definition => 'dataset',
  62             cv   => 'list_types',
  63         });
  64
  65   my $crosses_list_type_cvterm = $schema->resultset("Cv::Cvterm")->create_with({
  66       name => 'crosses',
  67       definition => 'crosses',
  68       cv   => 'list_types',
  69   });
  70
  71   my $populations_list_type_cvterm = $schema->resultset("Cv::Cvterm")->create_with({
  72       name => 'populations',
  73       definition => 'populations',
  74       cv   => 'list_types',
  75   });
  76
  77   my $numbers_list_type_cvterm = $schema->resultset("Cv::Cvterm")->create_with({
  78       name => 'numbers',
  79       definition => 'numbers',
  80       cv   => 'list_types',
  81   });
  82
  83     };
  84
  85     try {
  86         $schema->txn_do($coderef);
  87
  88     } catch {
  89         die "Load failed! " . $_ .  "\n" ;
  90     };
  91
  92     print "You're done!\n";
  93 }
  94
  95
  96 ####
  97 1; #
  98 ####