| blob | 60b2a7def1ea0327a9fbc464299a51eabf1f1a99 |
1 cv name cvterm name definition date person dbpatch # comment
2 calendar Fertilizer Event 00052
3 calendar Genotyping Event 00052
4 calendar Harvest Event 00052
5 calendar Meeting Event 00052
6 calendar Phenotyping Event 00052
7 calendar Planning Event 00052
8 calendar Planting Event 00052
9 calendar Presentation Event 00052
10 experiment_type pedigree experiment
11 experiment_type cross_experiment 00052
12 experiment_type field_layout 00052
13 experiment_type treatment_experiment 00081
14 experiment_type genotyping_experiment 00052
15 experiment_type genotyping_layout 00052
16 experiment_type phenotyping_experiment 00052
17 experiment_type seedlot_experiment 00077
18 experiment_type grafting_experiment 00079
19 genotype_property igd number
20 genotype_property infinium array sgn database
21 genotype_property snp genotyping
22 genotype_property vcf_snp_genotyping JSON string encoding all VCF info 6/20/2018 nm529 00098
23 geolocation_property geolocation address 00052
24 geolocation_property geolocation year 00052
25 geolocation_property country_name From BrAPI 03/27/2017 nm529 00076
26 geolocation_property country_code From BrAPI 03/27/2017 nm529 00076
27 geolocation_property abbreviation From BrAPI 03/27/2017 nm529 00076
28 geolocation_property location_type From BrAPI 03/27/2017 nm529 00076
29 geolocation_property annual_total_precipitation From BrAPI 03/27/2017 nm529 00076
30 geolocation_property continent From BrAPI 03/27/2017 nm529 00076
31 geolocation_property annual_mean_temperature From BrAPI 03/27/2017 nm529 00076
32 geolocation_property adm1 From BrAPI 03/27/2017 nm529 00076
33 geolocation_property adm2 From BrAPI 03/27/2017 nm529 00076
34 geolocation_property adm3 From BrAPI 03/27/2017 nm529 00076
35 geolocation_property local_name From BrAPI 03/27/2017 nm529 00076
36 geolocation_property region From BrAPI 03/27/2017 nm529 00076
37 geolocation_property alternative_name From BrAPI 03/27/2017 nm529 00076
38 list_types identifier_generation 08/21/2018 nm529 00102
39 list_types genotyping_trials 03/23/2018 nm529 00092
40 list_types tissue_samples 02/15/2018 nm529 00091
41 list_types seedlots 07/20/2017 nm529 00081
42 list_types subplots 08/23/2017 nm529 00084
43 list_types accessions
44 list_types crosses 00067
45 list_types dataset 00067
46 list_types locations
47 list_types locus_ids
48 list_types numbers 00067
49 list_types plots
50 list_types populations 00067
51 list_types traits
52 list_types trials
53 list_types unigene_ids
54 list_types vector_constructs 00049
55 list_types years
56 list_types family_names 00111
57 local date
58 local months after planting
59 local operator
60 local organism_sequencing_metadata
61 local sp_person_id 00052
62 local time
63 local visible_to_role 00052
64 nd_experiment_property cross_name 00052
65 nd_experiment_property cross_type 00052
66 nd_experiment_property genotyping_project_name 00052
67 nd_experiment_property genotyping_user_id 00052
68 nd_experiment_property number_of_progeny 00066
69 nd_experiment_property number_of_seeds_distributed 00082
70 organism_property organism_synonym 00052
71 organism_property species authority From BrAPI 03/27/2017 nm529 00076
72 organism_property subtaxa From BrAPI 03/27/2017 nm529 00076
73 organism_property subtaxa authority From BrAPI 03/27/2017 nm529 00076
74 project_property plot_width 04/05/2018 nm529 00093
75 project_property plot_length 04/05/2018 nm529 00093
76 project_property field_size 04/05/2018 nm529 00093
77 project_property field_trial_is_planned_to_be_genotyped 04/05/2018 nm529 00093
78 project_property field_trial_is_planned_to_cross 04/05/2018 nm529 00093
79 project_property breeding_program 00051
80 project_property data_agreement
81 project_property design
82 project_property genomic selection
83 project_property project_harvest_date 00080
84 project_property marker_count
85 project_property project_planting_date 00080
86 project_property management_factor_date For setting the date of a management factor 05/14/2019 nm529 00109
87 project_property management_factor_type For setting whether a management factor was a fertilizer herbicide fungicide or weeding 05/14/2019 nm529 00109
88 project_property population type
89 project_property project fertilizer date
90 project_property project first harvest date sgn database
91 project_property project harvested plants
92 project_property project last harvest date sgn database
93 project_property project location
94 project_property project sowing date sgn database
95 project_property project sown plants
96 project_property project transplanting date sgn database
97 project_property project year
98 project_property project_has_plant_entries 00054
99 project_property project_has_subplot_entries 00084
100 project_property project_has_tissue_sample_entries 00089
101 project_property trial_folder
102 project_property folder_for_trials For determining if a folder appears on manage trials page 12/6/16 nm529 00071
103 project_property folder_for_crosses For determining if a folder appears on manage crosses page 12/6/16 nm529 00071
104 project_property folder_for_genotyping_trials For determining if a folder appears on manage genotyping plate page 6/20/18 nm529 00098
105 project_property active From BrAPI 03/27/2017 nm529 00076
106 project_property breeding_program_abbreviation From BrAPI 03/27/2017 nm529 00076
107 project_property phenotypes_fully_uploaded To determine when a trial has all phenotypes uploaded 06/09/2017 nm529 00078
108 project_property trial_layout_json A json string holding a trial's cached layout 10/12/2017 nm529 00087
109 project_property genotyping_facility For genotyping plate to indicate where the plate was submitted 2/16/2017 nm529 00091
110 project_property genotyping_facility_submitted For genotyping plate to indicate if the plate was submitted to geno facility 2/16/2017 nm529 00091
111 project_property genotyping_facility_status For genotyping plate to indicate the status of a plate submitted to geno facility 2/16/2017 nm529 00091
112 project_property genotyping_plate_format For genotyping plate to indicate if 96 well or other 2/16/2017 nm529 00091
113 project_property genotyping_plate_sample_type For genotyping plate to indicate the type of sample in plate e.g. DNA 2/16/2017 nm529 00091
114 project_property genotyping_facility_plate_id To retrieve status info from genotyping facility this is the vendorPlateDbId 2/16/2017 nm529 00091
115 project_relationship breeding_program_trial_relationship 00051
116 project_relationship trial_treatment_relationship 00081
117 project_relationship field_trial_from_field_trial For linking field trials preceding other field trials 4/6/18 nm529 00093
118 project_relationship genotyping_trial_from_field_trial For linking genotyping plates to the source field trials 4/6/18 nm529 00093
119 project_relationship crossing_trial_from_field_trial For linking crossing trials to the source field trials 4/6/18 nm529 00093
120 project_type Advanced Yield Trial
121 project_type Clonal Evaluation
122 project_type Preliminary Yield Trial
123 project_type Regional Trials
124 project_type Seed Multiplication
125 project_type Seedling Nursery
126 project_type Uniform Yield Trial 00052
127 project_type Variety Release Trial
128 project_type crossing_trial 00079
129 project_type grafting_trial 00079
130 project_type pollinating_trial 00079
131 project_type Heterosis 00082
132 project_type Genetic Gain 00082
133 project_type Health Status 00082
134 project_type Storage 00082
135 project_type genotyping_trial 00087
136 project_type phenotyping_trial 00087
137 project_type crossing_block_trial 00098
138 stock_property block 00052
139 stock_property col_number 00052
140 stock_property igd_synonym 00052
141 stock_property is a control 00052
142 stock_property location_code 00052
143 stock_property organization 00052
144 stock_property plant_index_number 00054
145 stock_property subplot_index_number 00084
146 stock_property tissue_sample_index_number 00089
147 stock_property plot number 00052
148 stock_property plot_geo_json GeoJSON string for GPS coords polygon of plots. 12/03/2017 nm529 00088
149 stock_property range 00052
150 stock_property replicate 00052
151 stock_property row_number 00052
152 stock_property stock_synonym 00046
153 stock_property T1 00052
154 stock_property T2 00052
155 stock_property transgenic 00052
156 stock_property variety Found in editable_stock_props
157 stock_property notes Found in editable_stock_props
158 stock_property state Found in editable_stock_props
159 stock_property accession number From BrAPI 03/27/2017 nm529 00076
160 stock_property PUI From BrAPI 03/27/2017 nm529 00076
161 stock_property donor From BrAPI 03/27/2017 nm529 00076
162 stock_property donor institute From BrAPI 03/27/2017 nm529 00076
163 stock_property donor PUI From BrAPI 03/27/2017 nm529 00076
164 stock_property seed source From BrAPI 03/27/2017 nm529 00076
165 stock_property institute code From BrAPI 03/27/2017 nm529 00076
166 stock_property institute name From BrAPI 03/27/2017 nm529 00076
167 stock_property biological status of accession code From BrAPI 03/27/2017 nm529 00076
168 stock_property country of origin From BrAPI 03/27/2017 nm529 00076
169 stock_property type of germplasm storage code From BrAPI 03/27/2017 nm529 00076
170 stock_property entry number From BrAPI 03/27/2017 nm529 00076
171 stock_property acquisition date From BrAPI 03/27/2017 nm529 00076
172 stock_property current_count For keeping current count of seedlot 09/06/2017 nm529 00086
173 stock_property current_weight_gram For keeping current count of seedlot 09/06/2017 nm529 00092
174 stock_property crossing_metadata_json 00086
175 stock_property ploidy_level For indicating ploidy level of accession 12/20/2017 nm529 00088
176 stock_property genome_structure For indicating genome structure of accession 12/20/2017 nm529 00088
177 stock_property introgression_parent For indicating introgression parent accession name 12/20/2017 nm529 00088
178 stock_property introgression_backcross_parent For indicating introgression backcross parent accession name 12/20/2017 nm529 00088
179 stock_property introgression_map_version For indicating map version of introgression bp position 12/20/2017 nm529 00088
180 stock_property introgression_chromosome For indicating chromosome number of introgression 12/20/2017 nm529 00088
181 stock_property introgression_start_position_bp For indicating introgression start position in bp 12/20/2017 nm529 00088
182 stock_property introgression_end_position_bp For indicating introgression end position in bp 12/20/2017 nm529 00088
183 stock_property is_blank For indicating blank well in genotype plate 2/15/2018 nm529 00091
184 stock_property concentration For indicating concentration in genotype plate well 2/15/2018 nm529 00091
185 stock_property volume For indicating volume in genotype plate well 2/15/2018 nm529 00091
186 stock_property dna_person For indicating dna_person in genotype plate well 2/15/2018 nm529 00091
187 stock_property extraction For indicating extraction in genotype plate well 2/15/2018 nm529 00091
188 stock_property tissue_type For indicating tissue type in genotype plate well 2/15/2018 nm529 00091
189 stock_property ncbi_taxonomy_id For indicating ncbi taxonomy 2/15/2018 nm529 00091
190 stock_property family_name 00101 (obsoleted) changed to stock_type 00111
191 stock_property cross_combination Some breeding programs use cross combination (accession level) as a short informative name to indicate parents used in each cross 00111
192 stock_relationship female_parent 00052
193 stock_relationship male_parent 00052
194 stock_relationship member_of 00052
195 stock_relationship offspring_of 00052
196 stock_relationship plant_of 00052
197 stock_relationship plot_of 00052
198 stock_relationship subplot_of 00084
199 stock_relationship plant_of_subplot 00084
200 stock_relationship tissue_sample_of 00052
201 stock_relationship collection_of 00077
202 stock_relationship seed transaction 00077
203 stock_relationship rootstock_of 00079
204 stock_relationship scion_of 00079
205 stock_relationship female_plot_of 00086
206 stock_relationship male_plot_of 00086
207 stock_relationship female_plant_of 00094
208 stock_relationship male_plant_of 00094
209 stock_type accession 00052
210 stock_type backcross population 00052
211 stock_type cross 00052
212 stock_type f2 population 00052
213 stock_type mutant population 00052
214 stock_type plant 00052
215 stock_type plot 00052
216 stock_type population 00052
217 stock_type tissue_sample 00052
218 stock_type training population 00052
219 stock_type vector_construct 00052
220 stock_type seedlot 00077
221 stock_type subplot 00084
222 stock_type grafted_accession 00079
223 stock_type family_name 00111
224 trait_property trait_categories
225 trait_property trait_default_value
226 trait_property trait_details
227 trait_property trait_format
228 trait_property trait_maximum
229 trait_property trait_minimum
230 trial_type genotyping_trial
231 trial_type phenotyping_trial
232 cvterm_property uri From BrAPI 03/27/2017 nm529 00076
233 cvterm_property datatype From BrAPI 03/27/2017 nm529 00076
234 cvterm_property code From BrAPI 03/27/2017 nm529 00076
235 cvterm_property formula
236 protocol_property published date From BrAPI 03/27/2017 nm529 00076
237 protocol_property protocol type From BrAPI 03/27/2017 nm529 00076
238 protocol_property protocol unit From BrAPI 03/27/2017 nm529 00076
239 protocol_property protocol comment From BrAPI 03/27/2017 nm529 00076
240 protocol_property vcf_map_details Information about protocol, such as marker set 6/20/2018 nm529 00098
241 composable_cvs trait_ontology 05/01/2017 00073
242 composable_cvs composed_trait_ontology 05/01/2017 00073
243 composable_cvs object_ontology 05/01/2017 00073
244 composable_cvs attribute_ontology 05/01/2017 00073
245 composable_cvs method_ontology 05/01/2017 00073
246 composable_cvs unit_ontology 05/01/2017 00073
247 composable_cvs time_ontology 05/01/2017 00073
248 project_design? suggested to move the trial design names from projectprop.value to projectprop.type_id
249 phenotype_property phenotype_outlier suppressed phenotype measurement 01/04/2018 aco46 00089