Merge pull request #1340 from solgenomics/topic/remove_trial_type_cvterms
[sgn.git] / system_cvterms.txt
blob2bb4f6cc1c595df96af8e3b23c123399f00025ad
1 cv name cvterm name     definition      date    person  dbpatch #       comment
2 calendar        Fertilizer Event                                00052
3 calendar        Genotyping Event                                00052
4 calendar        Harvest Event                           00052
5 calendar        Meeting Event                           00052
6 calendar        Phenotyping Event                               00052
7 calendar        Planning Event                          00052
8 calendar        Planting Event                          00052
9 calendar        Presentation Event                              00052
10 experiment_type pedigree experiment
11 experiment_type cross_experiment                                00052
12 experiment_type field_layout                            00052
13 experiment_type treatment_experiment                            00081
14 experiment_type genotyping_experiment                           00052
15 experiment_type genotyping_layout                               00052
16 experiment_type phenotyping_experiment                          00052
17 experiment_type seedlot_experiment                              00077
18 experiment_type grafting_experiment                             00079
19 genotype_property       igd number
20 genotype_property       infinium array                                  sgn database
21 genotype_property       snp genotyping
22 geolocation_property    geolocation address                             00052
23 geolocation_property    geolocation year                                00052
24 geolocation_property    country_name    From BrAPI      03/27/2017      nm529   00076
25 geolocation_property    country_code    From BrAPI      03/27/2017      nm529   00076
26 geolocation_property    abbreviation    From BrAPI      03/27/2017      nm529   00076
27 geolocation_property    location_type   From BrAPI      03/27/2017      nm529   00076
28 geolocation_property    annual_total_precipitation      From BrAPI      03/27/2017      nm529   00076
29 geolocation_property    continent       From BrAPI      03/27/2017      nm529   00076
30 geolocation_property    annual_mean_temperature From BrAPI      03/27/2017      nm529   00076
31 geolocation_property    adm1    From BrAPI      03/27/2017      nm529   00076
32 geolocation_property    adm2    From BrAPI      03/27/2017      nm529   00076
33 geolocation_property    adm3    From BrAPI      03/27/2017      nm529   00076
34 geolocation_property    local_name      From BrAPI      03/27/2017      nm529   00076
35 geolocation_property    region  From BrAPI      03/27/2017      nm529   00076
36 geolocation_property    alternative_name        From BrAPI      03/27/2017      nm529   00076
37 list_types      seedlots                07/20/2017      nm529   00081
38 list_types      subplots                08/23/2017      nm529   00084
39 list_types      accessions
40 list_types      crosses                         00067
41 list_types      dataset                         00067
42 list_types      locations
43 list_types      locus_ids
44 list_types      numbers                         00067
45 list_types      plots
46 list_types      populations                             00067
47 list_types      traits
48 list_types      trials
49 list_types      unigene_ids
50 list_types      vector_constructs                               00049
51 list_types      years
52 local   date
53 local   months after planting
54 local   operator
55 local   organism_sequencing_metadata
56 local   sp_person_id                            00052
57 local   time
58 local   visible_to_role                         00052
59 nd_experiment_property  cross_name                              00052
60 nd_experiment_property  cross_type                              00052
61 nd_experiment_property  date_of_embryo_rescue                           00066
62 nd_experiment_property  date_of_harvest                         00066
63 nd_experiment_property  date_of_pollination                             00066
64 nd_experiment_property  date_of_seed_extraction                         00066
65 nd_experiment_property  days_from_extraction_to_embryo_rescue                           00066
66 nd_experiment_property  days_from_harvest_to_extraction                         00066
67 nd_experiment_property  days_to_maturity                                00066
68 nd_experiment_property  genotyping_project_name                         00052
69 nd_experiment_property  genotyping_user_id                              00052
70 nd_experiment_property  number_of_embryos_contaminated
71 nd_experiment_property  number_of_embryos_germinated                            00066
72 nd_experiment_property  number_of_embryos_rescued                               00066
73 nd_experiment_property  number_of_flowers                               00052
74 nd_experiment_property  number_of_fruits
75 nd_experiment_property  number_of_nonviable_seeds                               00066
76 nd_experiment_property  number_of_progeny                               00066
77 nd_experiment_property  number_of_seedlings_transplanted
78 nd_experiment_property  number_of_seeds                         00052
79 nd_experiment_property  number_of_seeds_extracted                               00066
80 nd_experiment_property  number_of_seeds_germinated                              00066
81 nd_experiment_property  number_of_seeds_planted                         00066
82 nd_experiment_property  number_of_viable_seeds                          00066
83 nd_experiment_property  number_of_seeds_distributed                             00082
84 nd_experiment_property  crossing_metadata_json    00086
85 organism_property       organism_synonym                                00052
86 organism_property       species authority       From BrAPI      03/27/2017      nm529   00076
87 organism_property       subtaxa From BrAPI      03/27/2017      nm529   00076
88 organism_property       subtaxa authority       From BrAPI      03/27/2017      nm529   00076
89 project_property        breeding_program                                00051
90 project_property        data_agreement
91 project_property        design
92 project_property        genomic selection
93 project_property        project_harvest_date                            00080
94 project_property        marker_count
95 project_property        project_planting_date                           00080
96 project_property        population type
97 project_property        project fertilizer date
98 project_property        project first harvest date                                      sgn database
99 project_property        project harvested plants
100 project_property        project last harvest date                                       sgn database
101 project_property        project location
102 project_property        project sowing date                                     sgn database
103 project_property        project sown plants
104 project_property        project transplanting date                                      sgn database
105 project_property        project year
106 project_property        project_has_plant_entries                               00054
107 project_property        project_has_subplot_entries                             00084
108 project_property        trial_folder
109 project_property        folder_for_trials       For determining if a folder appears on manage trials page       12/6/16 nm529   00071
110 project_property        folder_for_crosses      For determining if a folder appears on manage crosses page      12/6/16 nm529   00071
111 project_property        active  From BrAPI      03/27/2017      nm529   00076
112 project_property        breeding_program_abbreviation   From BrAPI      03/27/2017      nm529   00076
113 project_property        phenotypes_fully_uploaded       To determine when a trial has all phenotypes uploaded   06/09/2017      nm529   00078
114 project_relationship    breeding_program_trial_relationship                             00051
115 project_relationship    trial_treatment_relationship                            00081
116 project_type    Advanced Yeld Trials                            00052
117 project_type    Advanced Yield Trial
118 project_type    Clonal Evaluation
119 project_type    Preliminary Yield Trial
120 project_type    Preliminary Yield Trials                                00052
121 project_type    Regional Trials
122 project_type    Seed Multiplication
123 project_type    Seedling Nursery
124 project_type    Uniform Yield Trial                             00052
125 project_type    Variety Release Trial
126 project_type    crossing_trial  00079
127 project_type    grafting_trial  00079
128 project_type    pollinating_trial       00079
129 project_type    Heterosis                               00082
130 project_type    Genetic Gain                            00082
131 project_type    Health Status                           00082
132 project_type    Storage                         00082
133 project_type    genotyping_trial                00087
134 project_type    phenotyping_trial       00087
135 stock_property  block                           00052
136 stock_property  col_number                              00052
137 stock_property  igd_synonym                             00052
138 stock_property  is a control                            00052
139 stock_property  location_code                           00052
140 stock_property  organization                            00052
141 stock_property  plant_index_number                              00054
142 stock_property  subplot_index_number                            00084
143 stock_property  plot number                             00052
144 stock_property  range                           00052
145 stock_property  replicate                               00052
146 stock_property  row_number                              00052
147 stock_property  stock_synonym                           00046
148 stock_property  T1                              00052
149 stock_property  T2                              00052
150 stock_property  transgenic                              00052
151 stock_property  variety Found in editable_stock_props
152 stock_property  notes   Found in editable_stock_props
153 stock_property  state   Found in editable_stock_props
154 stock_property  accession number        From BrAPI      03/27/2017      nm529   00076
155 stock_property  PUI     From BrAPI      03/27/2017      nm529   00076
156 stock_property  donor   From BrAPI      03/27/2017      nm529   00076
157 stock_property  donor institute From BrAPI      03/27/2017      nm529   00076
158 stock_property  donor PUI       From BrAPI      03/27/2017      nm529   00076
159 stock_property  seed source     From BrAPI      03/27/2017      nm529   00076
160 stock_property  institute code  From BrAPI      03/27/2017      nm529   00076
161 stock_property  institute name  From BrAPI      03/27/2017      nm529   00076
162 stock_property  biological status of accession code     From BrAPI      03/27/2017      nm529   00076
163 stock_property  country of origin       From BrAPI      03/27/2017      nm529   00076
164 stock_property  type of germplasm storage code  From BrAPI      03/27/2017      nm529   00076
165 stock_property  entry number    From BrAPI      03/27/2017      nm529   00076
166 stock_property  acquisition date        From BrAPI      03/27/2017      nm529   00076
167 stock_property  current_count   For keeping current count of seedlot    09/06/2017      nm529   00086
168 stock_relationship      cross_relationship                              00052
169 stock_relationship      female_parent                           00052
170 stock_relationship      male_parent                             00052
171 stock_relationship      member_of                               00052
172 stock_relationship      offspring_of                            00052
173 stock_relationship      plant_of                                00052
174 stock_relationship      plot_of                         00052
175 stock_relationship      subplot_of                              00084
176 stock_relationship      plant_of_subplot                                00084
177 stock_relationship      tissue_sample_of                                00052
178 stock_relationship      collection_of                           00077
179 stock_relationship      seed transaction                                00077
180 stock_relationship      rootstock_of                                    00079
181 stock_relationship      scion_of                                        00079
182 stock_relationship  female_plot_of    00086
183 stock_relationship  male_plot_of    00086
184 stock_type      accession                               00052
185 stock_type      backcross population                            00052
186 stock_type      cross                           00052
187 stock_type      f2 population                           00052
188 stock_type      mutant population                               00052
189 stock_type      plant                           00052
190 stock_type      plot                            00052
191 stock_type      population                              00052
192 stock_type      tissue_sample                           00052
193 stock_type      training population                             00052
194 stock_type      vector_construct                                00052
195 stock_type      seedlot                         00077
196 stock_type      subplot                         00084
197 stock_type      grafted_accession               00079
198 trait_property  trait_categories
199 trait_property  trait_default_value
200 trait_property  trait_details
201 trait_property  trait_format
202 trait_property  trait_maximum
203 trait_property  trait_minimum
204 trial_type      genotyping_trial
205 trial_type      phenotyping_trial
206 cvterm_property uri     From BrAPI      03/27/2017      nm529   00076
207 cvterm_property datatype        From BrAPI      03/27/2017      nm529   00076
208 cvterm_property code    From BrAPI      03/27/2017      nm529   00076
209 protocol_property       published date  From BrAPI      03/27/2017      nm529   00076
210 protocol_property       protocol type   From BrAPI      03/27/2017      nm529   00076
211 protocol_property       protocol unit   From BrAPI      03/27/2017      nm529   00076
212 protocol_property       protocol comment        From BrAPI      03/27/2017      nm529   00076
213 composable_cvs  trait_ontology          05/01/2017              00073
214 composable_cvs  composed_trait_ontology         05/01/2017              00073
215 composable_cvs  object_ontology         05/01/2017              00073
216 composable_cvs  attribute_ontology              05/01/2017              00073
217 composable_cvs  method_ontology         05/01/2017              00073
218 composable_cvs  unit_ontology           05/01/2017              00073
219 composable_cvs  time_ontology           05/01/2017              00073
220 project_design?                                                 suggested to move the trial design names from projectprop.value to projectprop.type_id