mason/links/related_sites.mas

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   8         <td>
   9           <h4>Solanaceae Resources on the Web</h4>
  10
  11           <table summary="">
  12             <tr>
  13               <td width="20">&nbsp;</td>
  14
  15               <td>
  16                 <strong>Solanaceae Systematics, Descriptions,
  17                 Images</strong>
  18
  19                 <dl>
  20
  21                   <dt><br /><a href="http://solcap.msu.edu" target="_new" >SolCAP</a></dt>
  22                   <dd>The official website of the USDA sponsored Solanaceae Coordinated Agricultural Project (SolCAP), which will phenotype and genotype large panels of tomato and potato accessions. Results will also be made available on SGN.</dd>
  23                   <dt><a href=
  24                   "http://www.nhm.ac.uk/research-curation/projects/solanaceaesource/" target="_new">Solanum
  25                   Source</a></dt>
  26
  27                   <dd>The official website of the Solanum PBI
  28                   project, containing species descriptions,
  29                   specimen data from herbaria, nomenclatural data
  30                   about names and their places of publication, and
  31                   a bibliography of scientific articles about
  32                   members of the family.</dd>
  33
  34
  35                   <dt><br /><a href=
  36                   "http://www.bgard.science.ru.nl/" target="_new">Nijmegen
  37                   Experimental Garden and Genebank</a> in the
  38                   Netherlands</dt>
  39
  40                   <dd>A botanical garden with one of the major
  41                   collections of Solanaceae plants.</dd>
  42
  43                   <dt><br /><a href="http://cnia.inta.gov.ar/lat-sol" target="_new">Lat-SOL</a></dt>
  44                    <dd>The Latin American SOL initiative</dd>
  45                 </dl>
  46
  47                 <strong>Tomato Resources</strong>
  48
  49
  50
  51                 <dl>
  52                   <dt><a href="http://tomatoma.nbrp.jp/index.jsp" target="_new"> TOMATOMA Database</a>
  53     </dt>
  54     <dd>A database of EMS and Neutron mutants in the MicroTom background in Japan.</dd>
  55
  56     <dt><a href="http://www.agrobios.it/tilling" target="_new"> LycoTILL</a></dt>
  57 <dd>  LycoTILL is an interactive and evolving database which allows search on-line of images and phenotype data of the  tomato (cv /Red Setter/) mutant collection generated with EMS mutagenesis experiments.
  58 The Red Setter mutant population was developed for TILLING applications but can also be used  for forward  genetic studies.</dd>
  59
  60                   <dt><a href="http://phn.huji.ac.il/RTQ/" target="_new" >Phenom Networks</a></dt>
  61                   <dd>The Phenom Network engine by Dani Zamir and Yaniv Semel represents knowledge of complex traits and has tomato ILs, barley and rose traits with more organisms being added soon.</dd>
  62
  63                   <dt><a href="http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/" target="_new" >Tomato SNP database</a></dt>
  64                   <dd>A tomato SNP website by Jose Jimenez and Julin Maloof at UC Davis</dd>
  65
  66                   <dt><br /><a href=
  67                   "http://www.kazusa.or.jp/jsol/microtom/index.html" target="_new">MiBASE</a>, the Kazusa
  68                   Microtom Site</dt>
  69
  70                   <dd>EST and unigene dataset from Microtom,
  71                   including GO annotations and Pathway Viewer.</dd>
  72
  73                   <dt><br /><a href="http://www.pgb.kazusa.or.jp/kaftom/" target="_new" >KaFTom</a></dt>
  74                   <dd>The Kazusa Micro-Tom full-length cDNA Site</dd>
  75
  76                   <dt><br /><a href="http://tgc.ifas.ufl.edu" target="_new">The
  77                   Tomato Genetics Cooperative</a></dt>
  78
  79                   <dd>Homepage of the Tomato Genetics Cooperative
  80                   with access to publications on-line.</dd>
  81
  82                   <dt><br /><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
  83                   Genetic Resource Center (TGRC)</a></dt>
  84
  85                   <dd>Large collection of Solanaceae germplasms,
  86                   with a special focus on tomato.</dd>
  87
  88                   <dt><br /><a href=
  89                   "http://zamir.sgn.cornell.edu/mutants/" target="_new">Genes
  90                   that make Tomatoes</a></dt>
  91
  92                   <dd>Website of a large scale tomato mutagenesis
  93                   and phenotyping project.</dd>
  94
  95                   <dt><br /><a href="http://ted.bti.cornell.edu/" target="_new" >Tomato
  96     Expression Database (TED)</a></dt>
  97
  98                   <dd>Site dedicated to tomato microarrays.</dd>
  99
 100                   <dt><br /><a href=
 101                   "http://www.tomato.org/" target="_new">California Tomato Commission</a></dt>
 102
 103                   <dd>The website of the California Tomato Grower\'s
 104                   Association. Contains nutritional information and
 105                   recipes.</dd>
 106
 107                   <dt><br /><a href=
 108                   "http://www.gardenmosaics.cornell.edu/pgs/science/english/tomatoes.htm" target="_new" >
 109                   Garden Mosaics Science Pages about
 110                   Tomato</a></dt>
 111
 112                   <dd>A website with many pages for teaching about
 113                   plants and plant science, this page for teaching
 114                   about tomatoes.</dd>
 115
 116                   <dt><br /><a href="http://www.ars.usda.gov/Main/site_main.htm?modecode=19-10-05-00" target="_new" >USDA ARS Bioinformatics Homepage</a></dt>
 117
 118                   <dd>The website of the USDA bioinformatics unit
 119                   in Geneva, NY</dd>
 120
 121                   <dt><br /><a href=
 122                   "http://solcap.msu.edu/" target="_new" >
 123                   SolCAP project</a></dt>
 124                   <dd>The Solanaceae Coordinated Agriculture Project</dd>
 125
 126                   <dt><br /><a href=
 127                   "https://www.eu-sol.wur.nl" target="_new" >EU-SOL Tomato Core Collection Phenotype Database</a></dt>
 128                   <dd>The Tomato Core Collection Phenotype Database by the <a href="http://www.eu-sol.net">EU-SOL</a> Project funded by the 6th framework program of the European Union.</dd>
 129
 130                   <dt><br /><a href=
 131                   "http://tomato.nbrp.jp/indexEn.html" target="_new" >Tomato National BioResource Project</a></dt>
 132                   <dd>The National BioResource Project (NBRP) is a national project that aims to collect, preserve, and provide bioresources for life sciences research.</dd>
 133
 134                 </dl>
 135                 <strong>Tomatoes - gardening and heirloom varieties</strong>
 136                 <dl>
 137                 <dt><a href="http://www.tomatogardeningguru.com/" target="_new" >www.tomatogardeningguru.com</a></dt>
 138                 <dd>A website about growing tomatoes organically</dd>
 139                 <dt><a href="http://www.tomatofest.com" target="_new" >TomatoFest.com</a></dt>
 140                 <dd>Heirloom tomato fest</dd>
 141                 </dl>
 142                 <strong>Tomatoes - the lighter side</strong>
 143                 <dl>
 144                 <dt><a href="http://tomatoesareevil.com" target="_new">TomatoesAreEvil.com</a></dt>
 145                 <dd>A website by tomato haters (that\'s definitely not us!)</dd>
 146                 <dt><br /><a href="http://killertomatoes.com" target="_new" >Killertomatoes.com</a></dt>
 147
 148                 <strong>Potato Resources</strong>
 149
 150                 <dl>
 151                   <dt><a href="http://www.public.iastate.edu/~djh/">Potato Phloem Biology Project</a>
 152                  </dt>
 153                   <dd>An NSF funded project to study signaling networks that are involved in the induction of tuber formation.</dd>
 154 </dl>
 155
 156
 157                 <dl>
 158
 159                   <dt><a href="http://www.potatodiseases.org/" target="_new" >PotatoDiseases.org</a></dt>
 160                   <dd>A site describing diseases of potato from the University of Michigan.</dd>
 161
 162                   <dt><a href="http://www.cpgp.ca" target="_new" >Canadian Potato Genome Project</a></dt>
 163                   <dd>The Canadian Potato Genome Project (CPGP) was launched in 2002 to develop resources in gene discovery in potatoes, for use by Canadian researchers and their partners.</dd>
 164
 165                   <dt><a href="https://gabi.rzpd.de/PoMaMo.html" target="_new" >PoMaMo
 166                   Database</a></dt>
 167
 168                   <dd>Potato genome data from the Max-Planck
 169                   Institute for Plant Breeding Research, Cologne,
 170                   Germany, which includes SNP data, maps, marker
 171                   sequences, references and more.</dd>
 172
 173                   <dt><br /><a href="http://www.cipotato.org" target="_new" >Centro
 174                   Internacional de la Papa</a> (International
 175                   Potato Center, Peru)</dt>
 176
 177                   <dd>The International Potato Center in Lima,
 178                   Peru, with potato specific databases and
 179                   resources, such as the <a href=
 180                   "http://grcc.cip.cgiar.org/genebank/" target="_new">CIP Potato
 181                   Genebank</a> and the <a href=
 182                   "http://wpa.riu.cip.cgiar.org/index.php" target="_new" >World Potato
 183                   Atlas</a></dd>
 184
 185                   <dd>A site for potato and biotechnology
 186                   issues.</dd>
 187
 188                   <dt><br /><a href="http://gilb.cip.cgiar.org/" target="_new" >Global
 189                   Initiative for Late Blight (GILB)</a></dt>
 190
 191                   <dd>A collaboration for Late Blight
 192                   research.</dd>
 193
 194                   <dt><br /><a href=
 195                   "http://www.potgenebank.org/" target="_new" >Intergenebank for
 196                   Potato</a></dt>
 197
 198                   <dd>A database containing accession data from
 199                   different genebanks around the world, including
 200                   an SSR database.</dd>
 201
 202                   <!-- dt><br /><a href=
 203                   "http://www.potatogenome.org/nsf4/" target="_new" >PotatoGenome.org</a></dt  DEFUNCT?? -->
 204
 205                   <dt><br /><a href=
 206                   "http://www.europotato.org/" target="_new" >European Cultivated Potato Database</a></dt>
 207
 208
 209
 210                   <dd>The official website of the NSF potato genome
 211                   project.</dd>
 212                 </dl>
 213
 214                 <strong>Pepper Resources</strong>
 215
 216                 <dl>
 217                   <dt><a href=
 218                   "http://plant.pdrc.re.kr/ks200201/pepper.html" target="_new" >KRIBB
 219                   Pepper Resources</a></dt>
 220
 221                   <dd>A pepper EST database at KRIBB</dd>
 222
 223                   <dt><br /><a href=
 224                   "http://www.cnph.embrapa.br/capsicum/" target="_new" >Embrapa
 225                   Capsicum site</a></dt>
 226
 227                   <dd>A site dedicated to Pepper in Brazil</dd>
 228                 </dl>
 229
 230                 <strong>Petunia Resources</strong>
 231
 232                 <dl>
 233                   <dt><a href=
 234                   "http://www.petuniaplatform.net" target="_new" >Petuniaplatform.net</a></dt>
 235
 236                   <dd>A website dedicated to Petunia, with
 237                   contacts, techniques, bibliography and other
 238                   information.</dd>
 239                 </dl>
 240
 241                 <strong>Eggplant Resources</strong>
 242
 243                 <dl>
 244                   <dt><a href=
 245                   "http://www.bgard.science.ru.nl/WWW-IPGRI/eggplant.htm" target="_new" >Eggplant Database</a>
 246                    </dt>
 247 </dl>
 248
 249 <br />
 250                 <strong><i>Solanum dulcamara</i> Resources</strong>
 251
 252                 <dl><dt><a href="http://www.ru.nl/bsweet/">The B'sweet website</a></dt>
 253                   <dd><i>Solanum dulcamara</i> is a new research model for adaptation and ecology. See also <a href="http://www.ru.nl/ecogen/">Nicole van Ham's website</a></dd>
 254
 255                   </dl>
 256
 257                 <strong>Coffee Resources</strong>
 258
 259                 <dl>
 260                   <dt><a href="http://www.coffeedna.net/" target="_new" >CoffeeDNA
 261                   - A site for Coffee Genomics in Italy</a></dt>
 262
 263                   <dd>A site about coffee and coffee genomics.
 264                   Login required for certain functions.</dd>
 265                 </dl>
 266
 267                 <strong>Germplasm Resources</strong>
 268
 269                 <dl>
 270                   <dt><a href="http://tgrc.ucdavis.edu" target="_new" >Tomato
 271                   Genetic Resource Center (TGRC)</a></dt>
 272
 273                   <dd>Large collection of Solanaceae germplasms,
 274                   with a special focus on tomato.</dd>
 275
 276                   <dt><br /><a href="http://www.ars-grin.gov/npgs/" target="_new" >GRIN,
 277                   The National Germplasm System</a></dt>
 278
 279                   <dd>Large database of germplasm, integrating many
 280                   germplasm centers in the United States.</dd>
 281                 </dl>
 282
 283                 <strong>Euasterid Resources</strong>
 284
 285                 <dl>
 286                   <dt><a href="http://www.antirrhinum.net" target="_new" >Antirrhinum.net</a></dt>
 287                   <dd>The DragonDB database for Antirrhinum</dd>
 288                 </dl>
 289
 290                 <strong>Other Sequence Resources</strong>
 291
 292                 <dl>
 293                   <dt><a href="http://www.genome.arizona.edu/" target="_new" >The
 294                   Arizona Genome Initiative (AGI)</a></dt>
 295
 296                   <dd>The AGI is the place to <a href=
 297                   "http://www.genome.arizona.edu/orders/" target="_new" >order</a>
 298                   many of the ESTs and BAC clones for many
 299                   Solanaceae species such as potato. Please note
 300                   that BAC and EST <a href=
 301                   "http://ted.bti.cornell.edu/order/" target="_new" >orders</a>
 302                   for tomato are handled by the <a href=
 303                   "http://bti.cornell.edu/" target="_new" >Boyce Thompson
 304                   Institute</a>.</dd>
 305
 306                   <!-- LINK DEAD 11/2008 dt><br /><a href="http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=tomato">The
 307                   Institute for Genomic Research\'s (TIGR) Tomato
 308                   Gene Index</a></dt>
 309
 310                   <dd>The TIGR gene index for tomato.</dd -->
 311
 312                   <!--  LINK DEAD 11/2008 dt><br /><a href=
 313                   "http://grain.jouy.inra.fr/webace/webace?db=solgenes">
 314                   SolGenes</a></dt>
 315
 316                   <dd>The original SolGenes database. Still a
 317                   treasure of information.</dd -->
 318                 </dl>
 319               </td>
 320             </tr>
 321           </table>
 322
 323           <h4><a name="related" id="related"></a>Links to related
 324           websites</h4>
 325
 326           <ul>
 327             <li><a href="http://seedplants.org" target="_new" >Seedplants.org</a>, a site about seed plant descriptions and taxonomy.</li>
 328             <li><a href=
 329             "http://internt.nhm.ac.uk/jdsml/nature-online/seeds-of-trade/" target="_new" >Seeds of
 330             Trade</a> - a virtual book by Henry Hobhouse and Sandra
 331             Knapp about the history of plant cultivation.</li>
 332
 333             <li><a href="http://www.arabidopsis.org" target="_new" >TAIR</a> - The
 334             Arabidopsis Information Resource</li>
 335
 336             <li><a href="http://www.medicago.org" target="_new" >Medicago truncatula</a>
 337             - a model for legume research</li>
 338
 339             <li><a href="http://www.gramene.org" target="_new" >Gramene</a> - a
 340             comparative mapping resource for the grasses</li>
 341
 342             <li><a href="http://cggc.agtec.uga.edu" target="_new" >Comparative
 343             Grass Genomics Center</a> - a comparative resource for
 344             grasses, focusing on <em>Sorghum</em>.</li>
 345
 346             <li><a href=
 347             "http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp" target="_new" >OryzaBase</a>
 348             - Integrated Rice Science Database</li>
 349
 350             <li><a href="http://www.maizeGDB.org" target="_new" >MaizeGDB</a>
 351             - Maize Genetics and Genomics Database</li>
 352
 353             <li><a href="http://www.plantGDB.org" target="_new" >PlantGDB</a> -
 354             Plant Genome DataBase</li>
 355
 356             <li><a href="http://www.ncbi.nlm.nih.gov/" target="_new" >NCBI</a> -
 357             National Center for Biotechnology Information</li>
 358
 359             <li><a href="http://www.biocyc.org" target="_new" >BioCyc</a>,
 360             <a href="http://www.metacyc.org" target="_new" >MetaCyc</a> and
 361             <a href=
 362             "http://www.arabidopsis.org/biocyc/index.jsp" target="_new" >AraCyc</a> -
 363             Collections of curated biochemical pathways.</li>
 364
 365             <li><a href="http://www.genome.ad.jp/kegg/" target="_new" >KEGG</a> -
 366             Kyoto Encyclopedia of Genes and Genomes.</li>
 367
 368             <li><a href="http://www.biomoby.org" target="_new" >The BioMoby
 369             Project</a> - the database interoperability
 370             project</li>
 371
 372             <li><a href="http://www.genomics.cornell.edu" target="_new" >Cornell
 373             Genomics Initiative</a></li>
 374
 375             <li><a href="http://biocurator.org" target="_new" >Biocurator.org</a> - the official site for biocuration.</li>
 376           </ul><br />
 377           <br />
 378           <br />
 379           <br />
 380           <br />
 381         </td>
 382       </tr>
 383     </table>
 384
 385   </center>