Merge pull request #5230 from solgenomics/topic/open_pollinated
[sgn.git] / cgi-bin / community / links / genefinding.pl
blobc9dcd6b789461c867c661f7994e88f1ffb5175e4
1 use strict;
2 use CXGN::Page;
3 my $page=CXGN::Page->new('genefinding.html','html2pl converter');
4 $page->header('Gene Finding Links');
5 print<<END_HEREDOC;
7 <center>
10 <table summary="" width="720" cellpadding="0" cellspacing="0"
11 border="0">
12 <tr>
13 <td>
14 <h4>Genefinding tools</h4>
16 <ul>
17 <li><a href=
18 "http://www.ncbi.nlm.nih.gov/gorf/gorf.html">NCBI ORF Finder</a></li>
20 <li><a href=
21 "http://watson.nih.go.jp/~jun/cgi-bin/frameplot.pl">Frameplot</a></li>
23 <li><a href=
24 "http://rulai.cshl.org/tools/genefinder/">Genefinder</a></li>
26 <li><a href=
27 "http://www.cs.jhu.edu/~salzberg/announce-oc1.html">Oblique Classifier 1 (OC1)</a></li>
29 <li><a href=
30 "http://www.bioinformatics.org/JaMBW/3/1/5/index.html">ORFseeker</a></li>
32 <li><a href=
33 "http://www-hto.usc.edu/software/procrustes/wwwserv.html">
34 PROCRUSTES</a></li>
36 <li><a href=
37 "http://www.itb.cnr.it/sun/webgene/">WebGene</a></li>
38 </ul>
40 <h4>Primer Design</h4>
42 <ul>
43 <li><a href="http://frodo.wi.mit.edu/">
44 Primer3</a></li>
46 <li><a href="http://bibiserv.techfak.uni-bielefeld.de/genefisher/">GeneFisher</a></li>
48 <li><a href="http://www.cybergene.se/primerdesign/">GeneWalker</a></li>
50 <li><a href="http://seq.yeastgenome.org/cgi-bin/web-primer">Web Primer</a></li>
55 <li><a href="http://blocks.fhcrc.org/blocks/codehop.html">CODEHOP</a></li>
57 <li><a href="http://www.premierbiosoft.com/netprimer/netprlaunch/netprlaunch.html">NetPrimer</a></li>
59 <li><a href="http://ihg.gsf.de/ihg/ExonPrimer.html">ExonPrimer</a></li>
61 <li><a href="http://bioinformatics.org/primerx/">PrimerX</a></li>
63 <li><a href="http://www.cbs.dtu.dk/services/RevTrans/">RevTrans</a></li>
65 <li><a href="http://www.autoprime.de/">AutoPrime</a></li>
67 <li><a href="http://www.snpbox.org/">SNPbox</a></li>
69 <li><a href="http://www.umsl.edu/services/kellogg/primaclade.html">Primaclade</a></li>
71 <li><a href="http://cancer-seqbase.uchicago.edu/primers.html">Choosing Primers for sequencing</a></li>
73 <li><a href="http://seqcore.brcf.med.umich.edu/doc/dnaseq/primers.html">Design of Primers for Automated
74 Sequencing</a></li>
76 <li><a href="http://www.primerdesign.co.uk/"> Primer Design Workshop</a></li>
77 </ul>
79 <h4>Promoter Predictions</h4>
82 <ul>
83 <li><a href=
84 "http://thr.cit.nih.gov/molbio/proscan/">Proscan</a></li>
85 </ul>
86 </td>
87 </tr>
88 </table>
90 </center>
91 END_HEREDOC
92 $page->footer();