cgi-bin/maps/tomato_arabidopsis/index.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new('index.html','html2pl converter');
   4 $page->header('Tomato-Arabidopsis Synteny Map');
   5 print<<END_HEREDOC;
   6
   7   <center>
   8
   9
  10     <table summary="" width="720" cellpadding="0" cellspacing="0"
  11     border="0">
  12       <tr>
  13         <td>
  14           <h3 align="center">Tomato-Arabidopsis Synteny Map</h3>
  15
  16           <p>
  17           The following links display the molecular marker linkage
  18           maps of the tomato genome. When you click on any
  19           chromosome, you will see two maps of each chromosome. The
  20           first map (left side of image) is the high density
  21           molecular marker map published by Tanksley et al. (1992).
  22           On the right is a new map (Fulton et al, in prep) based
  23           on <a href="/markers/cos_markers.pl">COS markers</a>.
  24           Connecting the two maps (dashed lines) are common markers
  25           on both maps. Because of the large number of markers on
  26           each chromosome, it will not be possible to read the
  27           individual marker names. To see an enlarged region of
  28           each chromosome, click on the individual BINS which will
  29           be highlighted at the right most part of the screen. This
  30           will take you to an enlarged map of that section of the
  31           chromosome in which the marker names will be readable. To
  32           link to the sequence for any marker, click on the
  33           corresponding marker name in the list to the right of the
  34           map.</p>
  35
  36           <p>Both maps (high density RFLP map and COS marker map)
  37           are based on F2 populations from the interspecific cross
  38           L. esculentum x L. pennellii. Details of the high density
  39           RLFP mapping population can be found in Tanksley et al.
  40           (1992). The COS marker map is based on 80 F2 individuals.
  41           Markers to the right of solid hash marks were ordered at
  42           a LOD &gt; 3; markers next to dashed hash marks are
  43           ordered at a LOD &gt; 2 but &lt; 3; remaining markers are
  44           given in the most likely interval (&lt; LOD 3). Markers
  45           next to a vertical bar cosegregate. The COS marker map
  46           development is part of an ongoing project for determining
  47           the syntenic relationship between the Arabidopsis and
  48           tomato genomes. The map will be updated periodically as
  49           new markers are added and new interactive features added
  50           for making syntenic comparisons. Potato and eggplant
  51           comparative maps will also be added soon.</p>
  52
  53           <p>If you have any questions regarding the maps, please
  54           email us at <a href=
  55           "mailto:sgn-feedback\@sgn.cornell.edu">sgn-feedback\@sgn.cornell.edu</a>.</p>
  56
  57           <p>Tanksley et al. 1992. High density molecular linkage
  58           maps of the tomato and potato genomes. Genetics
  59           132:1141-1160.</p>
  60
  61           <ul>
  62             <li><a href="chr1_split.pl" target=
  63             "_blank">Chromosome 1</a></li>
  64
  65             <li><a href="chr2_split.pl" target=
  66             "_blank">Chromosome 2</a></li>
  67
  68             <li><a href="chr3_split.pl" target=
  69             "_blank">Chromosome 3</a></li>
  70
  71             <li><a href="chr4_split.pl" target=
  72             "_blank">Chromosome 4</a></li>
  73
  74             <li><a href="chr5_split.pl" target=
  75             "_blank">Chromosome 5</a></li>
  76
  77             <li><a href="chr6_split.pl" target=
  78             "_blank">Chromosome 6</a></li>
  79
  80             <li><a href="chr7_split.pl" target=
  81             "_blank">Chromosome 7</a></li>
  82
  83             <li><a href="chr8_split.pl" target=
  84             "_blank">Chromosome 8</a></li>
  85
  86             <li><a href="chr9_split.pl" target=
  87             "_blank">Chromosome 9</a></li>
  88
  89             <li><a href="chr10_split.pl" target=
  90             "_blank">Chromosome 10</a></li>
  91
  92             <li><a href="chr11_split.pl" target=
  93             "_blank">Chromosome 11</a></li>
  94
  95             <li><a href="chr12_split.pl" target=
  96             "_blank">Chromosome 12</a></li>
  97           </ul>
  98         </td>
  99       </tr>
 100     </table>
 101
 102   </center>
 103 END_HEREDOC
 104 $page->footer();