Merge pull request #5230 from solgenomics/topic/open_pollinated
[sgn.git] / cgi-bin / methods / unigene / unigene-builds.pl
blob5eea1bc363f5458b0b17d12c9728766d27179d7d
1 use strict;
2 use CXGN::Page;
3 my $page=CXGN::Page->new('unigene-builds.html','html2pl converter');
4 $page->header('SGN Unigene Builds');
5 print<<END_HEREDOC;
7 <center>
9 <table summary="" width="720" cellpadding="0" cellspacing="0"
10 border="0">
11 <tr>
12 <td>
15 <h3>SGN Unigene Builds</h3>
17 <p>The Sol Genomics Network unigene builds represent
18 "minimally redundant" collections of expressed genes in
19 Solanaceous species, constructed from EST/cDNA sequence
20 data present in SGN's databases. The unigene set is
21 "built" from EST data by assembling together, in contigs,
22 EST sequences which are ostensibly fragments of the same
23 gene, modulo sequencing errors and allelic variation. In
24 builds containing ESTs from more than one species, larger
25 variation is allowed to account for anticipated
26 evolutionary divergence of orthologus genes.</p>
28 <p>SGN's unigene assembly strategy, as well as sequence
29 recovery and trimming, is under active research and
30 continually refined. New builds are posted when advances
31 in the assembly process are made or new input data is
32 available.</p>
34 <p>The latest builds are posted below. For more
35 information on <a href=
36 "unigene-methods.pl">methods</a>, click the links below
37 next the the build of interest. Please also see our notes
38 on <a href="unigene-validation.pl">validation</a> of
39 SGN's assembly process and comparison with <a href=
40 "http://www.tigr.org/tdb/tgi/">TIGR's tomato gene
41 index</a>.</p>
42 </td>
43 </tr>
45 </table>
46 </center>
47 END_HEREDOC
48 $page->footer();