db/00045/AddTrialTypesYB.pm

   1 #!/usr/bin/env perl
   2
   3
   4 =head1 NAME
   5
   6  SampleDbpatchMoose.pm
   7
   8 =head1 SYNOPSIS
   9
  10 mx-run ThisPackageName [options] -H hostname -D dbname -u username [-F]
  11
  12 this is a subclass of L<CXGN::Metadata::Dbpatch>
  13 see the perldoc of parent class for more details.
  14
  15 =head1 DESCRIPTION
  16
  17 This is a test dummy patch.
  18 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  19
  20 =head1 AUTHOR
  21
  22  Alex Ogbonna<aco46@cornell.edu>
  23
  24 =head1 COPYRIGHT & LICENSE
  25
  26 Copyright 2010 Boyce Thompson Institute for Plant Research
  27
  28 This program is free software; you can redistribute it and/or modify
  29 it under the same terms as Perl itself.
  30
  31 =cut
  32
  33
  34 package AddTrialTypesYB;
  35
  36 use Moose;
  37 use Bio::Chado::Schema;
  38 use Try::Tiny;
  39 extends 'CXGN::Metadata::Dbpatch';
  40
  41
  42 has '+description' => ( default => <<'' );
  43 Description of this patch goes here
  44
  45 has '+prereq' => (
  46         default => sub {
  47         [],
  48     },
  49
  50   );
  51
  52 sub patch {
  53     my $self=shift;
  54
  55     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  56
  57     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  58
  59     print STDOUT "\nExecuting the SQL commands.\n";
  60     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  61
  62
  63     print STDERR "INSERTING CV TERMS...\n";
  64
  65    # my @terms = qw | 'Preliminary Yield Trial' 'Advance Yield Trial' 'Uniform Yield Trial' | ;
  66     my @terms = ('Preliminary Yield Trial', 'Advance Yield Trial', 'Uniform Yield Trial') ;
  67
  68     foreach my $t (@terms) {
  69
  70          $schema->resultset("Cv::Cvterm")->create_with( {
  71                 name => $t,
  72                 cv => 'project_type', }
  73                 );
  74
  75     }
  76
  77 print "You're done!\n";
  78 }
  79
  80
  81 ####
  82 1; #
  83 ####