db/00188/AddMemberTypeCvterm.pm

   1 #!/usr/bin/env perl
   2
   3 =head1 NAME
   4
   5 AddMemberTypeCvterm
   6
   7 =head1 SYNOPSIS
   8
   9 mx-run AddMemberTypeCvterm [options] -H hostname -D dbname -u username [-F]
  10
  11 this is a subclass of L<CXGN::Metadata::Dbpatch>
  12 see the perldoc of parent class for more details.
  13
  14 =head1 DESCRIPTION
  15 This patch adds member_type stock_property cvterm
  16 This subclass uses L<Moose>. The parent class uses L<MooseX::Runnable>
  17
  18 =head1 AUTHOR
  19
  20 Titima Tantikanjana <tt15@cornell.edu>
  21
  22 =head1 COPYRIGHT & LICENSE
  23
  24 Copyright 2010 Boyce Thompson Institute for Plant Research
  25
  26 This program is free software; you can redistribute it and/or modify
  27 it under the same terms as Perl itself.
  28
  29 =cut
  30
  31
  32 package AddMemberTypeCvterm;
  33
  34 use Moose;
  35 use Bio::Chado::Schema;
  36 use Try::Tiny;
  37 extends 'CXGN::Metadata::Dbpatch';
  38
  39
  40 has '+description' => ( default => <<'' );
  41 This patch adds the 'member_type' stock_property cvterm
  42
  43 has '+prereq' => (
  44         default => sub {
  45         [],
  46     },
  47
  48 );
  49
  50 sub patch {
  51     my $self=shift;
  52
  53     print STDOUT "Executing the patch:\n " .   $self->name . ".\n\nDescription:\n  ".  $self->description . ".\n\nExecuted by:\n " .  $self->username . " .";
  54
  55     print STDOUT "\nChecking if this db_patch was executed before or if previous db_patches have been executed.\n";
  56
  57     print STDOUT "\nExecuting the SQL commands.\n";
  58     my $schema = Bio::Chado::Schema->connect( sub { $self->dbh->clone } );
  59
  60     print STDERR "INSERTING CV TERMS...\n";
  61
  62     $schema->resultset("Cv::Cvterm")->create_with({
  63         name => 'member_type',
  64         cv => 'stock_property'
  65     });
  66
  67     print "You're done!\n";
  68 }
  69
  70
  71 ####
  72 1; #
  73 ####