mason/breeders_toolbox/add_new_trait_dialogs.mas

   1 <%args>
   2 </%args>
   3
   4 <div class="modal fade" id="add_new_observation_variable_dialog" name="add_new_observation_variable_dialog" tabindex="-1" role="dialog" aria-labelledby="addNewObservationVariableDialog">
   5     <div class="modal-dialog modal-xl" role="document">
   6         <div class="modal-content">
   7             <div class="modal-header">
   8                 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
   9                 <h4 class="modal-title" id="addNewObservationVariableDialog">Add New Observation Variable</h4>
  10             </div>
  11             <div class="modal-body">
  12                 <div class="container-fluid">
  13
  14                     <&| /util/workflow.mas, id=> "add_new_trait_workflow" &>
  15                         <&| /util/workflow.mas:step, title=> "Intro" &>
  16                             <& /page/page_title.mas, title=>"Need a new observation variable?" &>
  17                             <ul>
  18                                 <li>Please be sure the observation variable does not currently exist in the database using the trait search.</li>
  19                                 <li>Having many observation variables that are in fact recording the same thing is dangerous and can cause the database data to become fragmented.</li>
  20                                 <li>An observation variable is composed of a trait for the attribute being observed, a method describing how the attribute was measured, and a scale indicating the units of the observation.</li>
  21                                 <li>Having descriptive observation variables is critical for downstream analysis.</li>
  22                             </ul>
  23
  24                             <br/><br/>
  25                             <center>
  26                                 <button class="btn btn-primary" name="add_new_observation_variable_ontology_add_button">Need a new ontology? Click here first.</button>
  27                             </center>
  28
  29                             <br/><br/>
  30                             <center>
  31                                 <button class="btn btn-primary" onclick="Workflow.complete(this);">Go to Next Step</button>
  32                             </center>
  33                         </&>
  34
  35                         <&| /util/workflow.mas:step, title=> "Observation Variable" &>
  36                             <& /page/page_title.mas, title=>"Define your observation variable" &>
  37
  38                             <p>An observation variable is composed of a trait for the attribute being observed, a method describing how the attribute was measured, and a scale indicating the units of the observation.</p>
  39                             <hr>
  40
  41                             <center>
  42                                 <button class="btn btn-primary" name="add_new_observation_variable_ontology_add_button">Need a new ontology? Click here first.</button>
  43                             </center>
  44                             <br/><br/>
  45
  46                             <form class="form-horizontal">
  47                                 <div class="form-group">
  48                                     <label class="col-sm-3 control-label">Observation Variable Ontology Name: </label>
  49                                     <div class="col-sm-9">
  50                                         <div id="add_new_observation_variable_ontology_select_div">
  51                                         </div>
  52                                     </div>
  53                                 </div>
  54                                 <div class="form-group">
  55                                     <label class="col-sm-3 control-label">New Observation Variable Name: </label>
  56                                     <div class="col-sm-9">
  57                                         <input class="form-control" id="add_new_observation_variable_name" name="add_new_observation_variable_name" type="text" placeholder="e.g. total mass of fruit harvest from a plant using MachineX in kilograms"/>
  58                                     </div>
  59                                 </div>
  60                                 <div class="form-group">
  61                                     <label class="col-sm-3 control-label">New Observation Variable Definition: </label>
  62                                     <div class="col-sm-9">
  63                                         <input class="form-control" id="add_new_observation_variable_definition" name="add_new_observation_variable_definition" type="text" placeholder="e.g. total mass of fruit harvest from a plant using MachineX in kilograms"/>
  64                                     </div>
  65                                 </div>
  66                             </form>
  67                             <br/>
  68
  69                             <center>
  70                                 <button class="btn btn-primary" id="add_new_trait_observation_variable_step">Go to Next Step</button>
  71                             </center>
  72
  73                         </&>
  74                         <&| /util/workflow.mas:step, title=> "Trait" &>
  75                             <& /page/page_title.mas, title=>"Define your trait" &>
  76
  77                             <ul>
  78                                 <li>A trait defines the attribute being measured. It is one component of an observation variable; the others are a method and a scale.</li>
  79                                 <li>Here you can select a trait that already exists in an ontology in the database or you can add a new trait into an ontology.</li>
  80                             </ul>
  81                             <hr>
  82
  83                             <center>
  84                                 <button class="btn btn-primary" name="add_new_observation_variable_ontology_add_button">Need a new ontology? Click here first.</button>
  85                             </center>
  86                             <br/><br/>
  87
  88                             <form class="form-horizontal">
  89                                 <div class="form-group">
  90                                     <label class="col-sm-3 control-label">Trait Ontology Name: </label>
  91                                     <div class="col-sm-9">
  92                                         <div id="add_new_trait_ontology_select_div">
  93                                         </div>
  94                                     </div>
  95                                 </div>
  96                                 <div class="form-group">
  97                                     <label class="col-sm-3 control-label">Existing Traits in Selected Ontology: </label>
  98                                     <div class="col-sm-9">
  99                                         <div id="add_new_trait_existing_trait_select_div">
 100                                         </div>
 101                                     </div>
 102                                 </div>
 103                                 <hr>
 104
 105                                 <div class="well">
 106                                     <h3>If the trait does not exist in the ontology you selected above, you can add a new trait into the ontology here.</h3>
 107                                 </div>
 108
 109                                 <div class="form-group">
 110                                     <label class="col-sm-3 control-label">New Trait Name: </label>
 111                                     <div class="col-sm-9">
 112                                         <input class="form-control" id="add_new_trait_name" name="add_new_trait_name" type="text" placeholder="e.g. harvested fruit mass per plant"/>
 113                                     </div>
 114                                 </div>
 115                                 <div class="form-group">
 116                                     <label class="col-sm-3 control-label">New Trait Definition: </label>
 117                                     <div class="col-sm-9">
 118                                         <input class="form-control" id="add_new_trait_definition" name="add_new_trait_definition" type="text" placeholder="e.g. the total mass of fruit harvested from a plant"/>
 119                                     </div>
 120                                 </div>
 121                             </form>
 122
 123                             <center>
 124                                 <button class="btn btn-primary" id="add_new_trait_trait_step">Go to Next Step</button>
 125                             </center>
 126
 127                         </&>
 128                         <&| /util/workflow.mas:step, title=> "Method" &>
 129                             <p>A method defines the how it was measured measured. It is one component of an observation variable; the others are a trait and a scale.</p>
 130                             <hr>
 131
 132                             <center>
 133                                 <button class="btn btn-primary" name="add_new_observation_variable_ontology_add_button">Need a new ontology? Click here first.</button>
 134                             </center>
 135                             <br/><br/>
 136
 137                             <form class="form-horizontal">
 138                                 <div class="form-group">
 139                                     <label class="col-sm-3 control-label">Method Ontology Name: </label>
 140                                     <div class="col-sm-9">
 141                                         <div id="add_new_trait_method_ontology_select_div">
 142                                         </div>
 143                                     </div>
 144                                 </div>
 145                                 <div class="form-group">
 146                                     <label class="col-sm-3 control-label">Existing Methods in Selected Ontology: </label>
 147                                     <div class="col-sm-9">
 148                                         <div id="add_new_trait_existing_method_select_div">
 149                                         </div>
 150                                     </div>
 151                                 </div>
 152                                 <hr>
 153
 154                                 <div class="well">
 155                                     <h3>If the method does not exist in the ontology you selected above, you can add a new method into the ontology here.</h3>
 156                                 </div>
 157
 158                                 <div class="form-group">
 159                                     <label class="col-sm-3 control-label">New Method Name: </label>
 160                                     <div class="col-sm-9">
 161                                         <input class="form-control" id="add_new_trait_method_name" name="add_new_trait_method_name" type="text" placeholder="e.g. BrandA Mass Balance 0.001g Accuracy"/>
 162                                     </div>
 163                                 </div>
 164                                 <div class="form-group">
 165                                     <label class="col-sm-3 control-label">New Method Definition: </label>
 166                                     <div class="col-sm-9">
 167                                         <input class="form-control" id="add_new_trait_method_definition" name="add_new_trait_method_definition" type="text" placeholder="e.g. BrandA MachineX Mass Balance 0.001g Accuracy"/>
 168                                     </div>
 169                                 </div>
 170                             </form>
 171
 172                             <center>
 173                                 <button type="button" class="btn btn-primary" id="add_new_trait_method_step">Go to Next Step</button>
 174                             </center>
 175
 176                         </&>
 177                         <&| /util/workflow.mas:step, title=> "Scale" &>
 178                             <& /page/page_title.mas, title=>"Define your scale" &>
 179
 180                             <center>
 181                                 <button class="btn btn-primary" name="add_new_observation_variable_ontology_add_button">Need a new ontology? Click here first.</button>
 182                             </center>
 183                             <br/><br/>
 184
 185                             <form class="form-horizontal">
 186                                 <div class="form-group">
 187                                     <label class="col-sm-3 control-label">Scale Ontology Name: </label>
 188                                     <div class="col-sm-9">
 189                                         <div id="add_new_trait_scale_ontology_select_div">
 190                                         </div>
 191                                     </div>
 192                                 </div>
 193                                 <div class="form-group">
 194                                     <label class="col-sm-3 control-label">Existing Scales in Selected Ontology: </label>
 195                                     <div class="col-sm-9">
 196                                         <div id="add_new_trait_existing_scale_select_div">
 197                                         </div>
 198                                     </div>
 199                                 </div>
 200                                 <hr>
 201
 202                                 <div class="well">
 203                                     <h3>If the scale does not exist in the ontology you selected above, you can add a new scale into the ontology here.</h3>
 204                                 </div>
 205
 206                                 <div class="form-group">
 207                                     <label class="col-sm-3 control-label">New Scale Name: </label>
 208                                     <div class="col-sm-9">
 209                                         <input class="form-control" id="add_new_trait_scale_name" name="add_new_trait_scale_name" type="text" placeholder="e.g. mass in kilograms"/>
 210                                     </div>
 211                                 </div>
 212                                 <div class="form-group">
 213                                     <label class="col-sm-3 control-label">New Scale Definition: </label>
 214                                     <div class="col-sm-9">
 215                                         <input class="form-control" id="add_new_trait_scale_definition" name="add_new_trait_scale_definition" type="text" placeholder="e.g. the mass in kilograms"/>
 216                                     </div>
 217                                 </div>
 218                                 <div class="form-group">
 219                                     <label class="col-sm-3 control-label">New Scale Format: </label>
 220                                     <div class="col-sm-9">
 221                                         <select class="form-control" id="add_new_trait_scale_format" name="add_new_trait_scale_format" >
 222                                             <option value="">Select One</option>
 223                                             <option value="qualitative">qualitative</option>
 224                                             <option value="quantitative">quantitative</option>
 225                                         </select>
 226                                     </div>
 227                                 </div>
 228                                 <div class="form-group">
 229                                     <label class="col-sm-3 control-label">New Scale Minimum: </label>
 230                                     <div class="col-sm-9">
 231                                         <input class="form-control" id="add_new_trait_scale_minimum" name="add_new_trait_scale_minimum" type="text" placeholder="e.g. 1"/>
 232                                     </div>
 233                                 </div>
 234                                 <div class="form-group">
 235                                     <label class="col-sm-3 control-label">New Scale Maximum: </label>
 236                                     <div class="col-sm-9">
 237                                         <input class="form-control" id="add_new_trait_scale_maximum" name="add_new_trait_scale_maximum" type="text" placeholder="e.g. 10000"/>
 238                                     </div>
 239                                 </div>
 240                                 <div class="form-group">
 241                                     <label class="col-sm-3 control-label">New Scale Categories ('/' separated): </label>
 242                                     <div class="col-sm-9">
 243                                         <input class="form-control" id="add_new_trait_scale_categories" name="add_new_trait_scale_categories" type="text" placeholder="e.g. 1/3/5/7"/>
 244                                     </div>
 245                                 </div>
 246                                 <div class="form-group">
 247                                     <label class="col-sm-3 control-label">New Scale Default Value: </label>
 248                                     <div class="col-sm-9">
 249                                         <input class="form-control" id="add_new_trait_scale_default" name="add_new_trait_scale_default" type="text" placeholder="e.g. 5"/>
 250                                     </div>
 251                                 </div>
 252                             </form>
 253
 254                             <center>
 255                                 <button type="button" class="btn btn-primary" id="add_new_trait_scale_step">Go to Next Step</button>
 256                             </center>
 257
 258                         </&>
 259                         <&| /util/workflow.mas:step, title=> "Confirm" &>
 260                             <& /page/page_title.mas, title=>"Confirm you are creating this observation variable in the database" &>
 261
 262                             <center>
 263                                 <button class="btn btn-primary" id="add_new_trait_submit_button">Submit</button>
 264                             </center>
 265                         </&>
 266                         <&| /util/workflow.mas:complete, title=> "Complete" &>
 267                             <& /page/page_title.mas, title=>"Finished! Your observation variable is now in the database" &>
 268
 269                             <div id="add_new_trait_added_observation_variable_div">
 270                             </div>
 271                         </&>
 272
 273                     </&><!-- End of workflow -->
 274
 275                 </div>
 276             </div>
 277             <div class="modal-footer">
 278                 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
 279             </div>
 280         </div>
 281     </div>
 282 </div>
 283
 284 <div class="modal fade" id="add_new_observation_variable_ontology_dialog" name="add_new_observation_variable_ontology_dialog" tabindex="-1" role="dialog" aria-labelledby="addNewObservationVariableOntologyDialog">
 285     <div class="modal-dialog modal-xl" role="document">
 286         <div class="modal-content">
 287             <div class="modal-header">
 288                 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
 289                 <h4 class="modal-title" id="addNewObservationVariableOntologyDialog">Add New Ontology</h4>
 290             </div>
 291             <div class="modal-body">
 292                 <div class="container-fluid">
 293
 294                     <&| /util/workflow.mas, id=> "add_new_ontology_workflow" &>
 295                         <&| /util/workflow.mas:step, title=> "Intro" &>
 296                             <& /page/page_title.mas, title=>"Start a new ontology" &>
 297                             <ul>
 298                                 <li>In this workflow you can add a new ontology to the database. Once an ontology is added, you can add terms into it from the add observation variables workflow.</li>
 299                                 <li>Ontologies are tagged as being either for traits, methods, or scales</li>
 300                             </ul>
 301
 302                             <br/><br/>
 303                             <center>
 304                                 <button class="btn btn-primary" onclick="Workflow.complete(this);">Go to Next Step</button>
 305                             </center>
 306                         </&>
 307
 308                         <&| /util/workflow.mas:step, title=> "Ontology" &>
 309                             <& /page/page_title.mas, title=>"Define your ontology" &>
 310
 311                             <form class="form-horizontal">
 312                                 <div class="form-group">
 313                                     <label class="col-sm-3 control-label">New Ontology Name: </label>
 314                                     <div class="col-sm-9">
 315                                         <input class="form-control" id="add_new_observation_variable_ontology_name" name="add_new_observation_variable_ontology_name" type="text" placeholder="e.g. MyBreedingProgram Grape Ontology"/>
 316                                     </div>
 317                                 </div>
 318                                 <div class="form-group">
 319                                     <label class="col-sm-3 control-label">New Ontology Definition: </label>
 320                                     <div class="col-sm-9">
 321                                         <input class="form-control" id="add_new_observation_variable_ontology_definition" name="add_new_observation_variable_ontology_definition" type="text" placeholder="e.g. description of the ontology"/>
 322                                     </div>
 323                                 </div>
 324                                 <div class="form-group">
 325                                     <label class="col-sm-3 control-label">New Ontology Database Identifier: </label>
 326                                     <div class="col-sm-9">
 327                                         <input class="form-control" id="add_new_observation_variable_ontology_db_name" name="add_new_observation_variable_ontology_db_name" type="text" placeholder="a unique identifier for the terms in the ontology e.g. CO322"/>
 328                                     </div>
 329                                 </div>
 330                                 <div class="form-group">
 331                                     <label class="col-sm-3 control-label">Ontology Type: </label>
 332                                     <div class="col-sm-9">
 333                                         <select class="form-control" id="add_new_observation_variable_ontology_type" name="add_new_observation_variable_ontology_type"/>
 334                                             <option value="trait_ontology">Trait or Observation Variable</option>
 335                                             <option value="method_ontology">Method</option>
 336                                             <option value="unit_ontology">Scale</option>
 337                                         </select>
 338                                     </div>
 339                                 </div>
 340                             </form>
 341                             <br/>
 342
 343                             <center>
 344                                 <button class="btn btn-primary" id="add_new_trait_observation_variable_ontology_step">Store Ontology</button>
 345                             </center>
 346
 347                         </&>
 348                         <&| /util/workflow.mas:complete, title=> "Complete" &>
 349                             <& /page/page_title.mas, title=>"Finished! Your ontology is now in the database. Add new terms into it from the add observation variable workflow." &>
 350                         </&>
 351
 352                     </&><!-- End of workflow -->
 353
 354                 </div>
 355             </div>
 356             <div class="modal-footer">
 357                 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
 358             </div>
 359         </div>
 360     </div>
 361 </div>
 362
 363 <script>
 364 jQuery(document).ready(function() {
 365
 366     jQuery('button[name="add_new_observation_variable_ontology_add_button"]').click(function(){
 367         jQuery('#add_new_observation_variable_ontology_dialog').modal('show');
 368     });
 369
 370     jQuery('button[name="add_new_observation_variable_button"]').click(function(){
 371         jQuery('#add_new_observation_variable_dialog').modal('show');
 372
 373         get_select_box('trait_variable_ontologies', 'add_new_observation_variable_ontology_select_div', { 'name':'add_new_observation_variable_ontology_select',    'id':'add_new_observation_variable_ontology_select', 'empty':1, 'cvprop_type_name':JSON.stringify(['trait_ontology','composed_trait_ontology','attribute_ontology']) });
 374         get_select_box('trait_variable_ontologies', 'add_new_trait_ontology_select_div', { 'name':'add_new_trait_ontology_select', 'id':'add_new_trait_ontology_select', 'empty':1, 'cvprop_type_name':JSON.stringify(['trait_ontology','composed_trait_ontology','attribute_ontology']) });
 375         get_select_box('trait_variable_ontologies', 'add_new_trait_method_ontology_select_div', { 'name':'add_new_trait_method_ontology_select', 'id':'add_new_trait_method_ontology_select', 'empty':1, 'cvprop_type_name':JSON.stringify(['method_ontology']) });
 376         get_select_box('trait_variable_ontologies', 'add_new_trait_scale_ontology_select_div', { 'name':'add_new_trait_scale_ontology_select', 'id':'add_new_trait_scale_ontology_select', 'empty':1, 'cvprop_type_name':JSON.stringify(['unit_ontology']) });
 377
 378     });
 379
 380     var add_new_trait_new_observation_variable_db_id;
 381     var add_new_trait_new_observation_variable_name;
 382     var add_new_trait_new_observation_variable_definition;
 383     jQuery('#add_new_trait_observation_variable_step').click(function() {
 384         if (jQuery('#add_new_observation_variable_name').val() == '') {
 385             alert('Please give a new observation variable name!');
 386             return false;
 387         }
 388         if (jQuery('#add_new_observation_variable_definition').val() == '') {
 389             alert('Please give a new observation variable definition!');
 390             return false;
 391         }
 392         var selected = [];
 393         jQuery('input[name="add_new_observation_variable_ontology_select"]:checked').each(function(){
 394             selected.push(jQuery(this).val());
 395         });
 396         if (selected.length < 1) {
 397             alert('Please select one observation variable ontology!');
 398         } else if (selected.length > 1) {
 399             alert('Only select one observation variable ontology!');
 400         } else {
 401             add_new_trait_new_observation_variable_name = jQuery('#add_new_observation_variable_name').val();
 402             add_new_trait_new_observation_variable_definition = jQuery('#add_new_observation_variable_definition').val();
 403             add_new_trait_new_observation_variable_db_id = selected[0];
 404             Workflow.complete('#add_new_trait_observation_variable_step');
 405             Workflow.focus('#add_new_trait_workflow', 2);
 406         }
 407         return false;
 408     });
 409
 410     var add_new_trait_new_trait_db_id;
 411     jQuery(document).on('change', 'input[name="add_new_trait_ontology_select"]', function(){
 412         var selected = [];
 413         jQuery('input[name="add_new_trait_ontology_select"]:checked').each(function(){
 414             selected.push(jQuery(this).val());
 415         });
 416         if (selected.length > 1) {
 417             alert('Only select one trait ontology!');
 418         } else {
 419             add_new_trait_new_trait_db_id = selected[0];
 420             get_select_box('all_ontology_terms', 'add_new_trait_existing_trait_select_div', { 'selectbox_name':'add_new_trait_existing_trait_select',    'selectbox_id':'add_new_trait_existing_trait_select', 'empty':1, 'db_id':selected[0], 'exclude_top_term':1 });
 421         }
 422     });
 423
 424     var add_new_trait_new_method_db_id;
 425     jQuery(document).on('change', 'input[name="add_new_trait_method_ontology_select"]', function(){
 426         var selected = [];
 427         jQuery('input[name="add_new_trait_method_ontology_select"]:checked').each(function(){
 428             selected.push(jQuery(this).val());
 429         });
 430         if (selected.length > 1) {
 431             alert('Only select one method ontology!');
 432         } else {
 433             add_new_trait_new_method_db_id = selected[0];
 434             get_select_box('all_ontology_terms', 'add_new_trait_existing_method_select_div', { 'selectbox_name':'add_new_trait_existing_method_select',    'selectbox_id':'add_new_trait_existing_method_select', 'empty':1, 'db_id':selected[0], 'exclude_top_term':1 });
 435         }
 436     });
 437
 438     var add_new_trait_new_scale_db_id;
 439     jQuery(document).on('change', 'input[name="add_new_trait_scale_ontology_select"]', function(){
 440         var selected = [];
 441         jQuery('input[name="add_new_trait_scale_ontology_select"]:checked').each(function(){
 442             selected.push(jQuery(this).val());
 443         });
 444         if (selected.length > 1) {
 445             alert('Only select one scale ontology!');
 446         } else {
 447             add_new_trait_new_scale_db_id = selected[0];
 448             get_select_box('all_ontology_terms', 'add_new_trait_existing_scale_select_div', { 'selectbox_name':'add_new_trait_existing_scale_select',    'selectbox_id':'add_new_trait_existing_scale_select', 'empty':1, 'db_id':selected[0], 'exclude_top_term':1 });
 449         }
 450     });
 451
 452     var add_new_trait_selected_trait_cvterm_id;
 453     var add_new_trait_new_trait_name;
 454     var add_new_trait_new_trait_definition;
 455     jQuery('#add_new_trait_trait_step').click(function() {
 456         var add_new_trait_selected_trait_val = jQuery('#add_new_trait_existing_trait_select').val();
 457         if (add_new_trait_selected_trait_val == '0') {
 458             add_new_trait_selected_trait_val = '';
 459         }
 460         if (add_new_trait_selected_trait_val == '' && jQuery('#add_new_trait_name').val() == '') {
 461             alert('Please select an existing trait or give a new trait name!');
 462             return false;
 463         }
 464         if (add_new_trait_selected_trait_val != '' && jQuery('#add_new_trait_name').val() != '') {
 465             alert('Please select an existing trait or give a new trait name, and not both!');
 466             return false;
 467         }
 468         var selected = [];
 469         jQuery('input[name="add_new_trait_ontology_select"]:checked').each(function(){
 470             selected.push(jQuery(this).val());
 471         });
 472         if (selected.length < 1) {
 473             alert('Please select one trait ontology!');
 474         } else if (selected.length > 1) {
 475             alert('Only select one trait ontology!');
 476         } else {
 477             if (add_new_trait_selected_trait_val == '') {
 478                 if (jQuery('#add_new_trait_name').val() == ''){
 479                     alert('Please give a new trait name!');
 480                 }
 481                 else if (jQuery('#add_new_trait_definition').val() == ''){
 482                     alert('Please give a new trait definition!');
 483                 }
 484                 else {
 485                     add_new_trait_new_trait_name = jQuery('#add_new_trait_name').val();
 486                     add_new_trait_new_trait_definition = jQuery('#add_new_trait_definition').val();
 487                     Workflow.complete('#add_new_trait_trait_step');
 488                     Workflow.focus('#add_new_trait_workflow', 3);
 489                 }
 490             } else {
 491                 add_new_trait_selected_trait_cvterm_id = add_new_trait_selected_trait_val;
 492                 Workflow.complete('#add_new_trait_trait_step');
 493                 Workflow.focus('#add_new_trait_workflow', 3);
 494             }
 495         }
 496         return false;
 497     });
 498
 499     var add_new_trait_selected_method_cvterm_id;
 500     var add_new_trait_new_method_name;
 501     var add_new_trait_new_method_definition;
 502     jQuery('#add_new_trait_method_step').click(function(){
 503         var add_new_trait_selected_method_val = jQuery('#add_new_trait_existing_method_select').val();
 504         if (add_new_trait_selected_method_val == '0') {
 505             add_new_trait_selected_method_val = '';
 506         }
 507         if (add_new_trait_selected_method_val == '' && jQuery('#add_new_trait_method_name').val() == '') {
 508             alert('Please select an existing method or give a new method name!');
 509             return false;
 510         }
 511         if (add_new_trait_selected_method_val != '' && jQuery('#add_new_trait_method_name').val() != '') {
 512             alert('Please select an existing method or give a new method name, and not both!');
 513             return false;
 514         }
 515         var selected = [];
 516         jQuery('input[name="add_new_trait_method_ontology_select"]:checked').each(function(){
 517             selected.push(jQuery(this).val());
 518         });
 519         if (selected.length < 1) {
 520             alert('Please select one method ontology!');
 521         } else if (selected.length > 1) {
 522             alert('Only select one method ontology!');
 523         } else {
 524             if (add_new_trait_selected_method_val == '') {
 525                 if (jQuery('#add_new_trait_method_name').val() == ''){
 526                     alert('Please give a new method name!');
 527                 }
 528                 else if (jQuery('#add_new_trait_method_definition').val() == ''){
 529                     alert('Please give a new method definition!');
 530                 }
 531                 else {
 532                     add_new_trait_new_method_name = jQuery('#add_new_trait_method_name').val();
 533                     add_new_trait_new_method_definition = jQuery('#add_new_trait_method_definition').val();
 534                     Workflow.complete('#add_new_trait_method_step');
 535                     Workflow.focus('#add_new_trait_workflow', 4);
 536                 }
 537             } else {
 538                 add_new_trait_selected_method_cvterm_id = add_new_trait_selected_method_val;
 539                 Workflow.complete('#add_new_trait_method_step');
 540                 Workflow.focus('#add_new_trait_workflow', 4);
 541             }
 542         }
 543         return false;
 544     });
 545
 546     var add_new_trait_selected_scale_cvterm_id;
 547     var add_new_trait_new_scale_name;
 548     var add_new_trait_new_scale_definition;
 549     var add_new_trait_new_scale_format;
 550     var add_new_trait_new_scale_minimum;
 551     var add_new_trait_new_scale_maximum;
 552     var add_new_trait_new_scale_default;
 553     var add_new_trait_new_scale_categories;
 554     jQuery('#add_new_trait_scale_step').click(function(){
 555         var add_new_trait_selected_scale_val = jQuery('#add_new_trait_existing_scale_select').val();
 556         if (add_new_trait_selected_scale_val == '0') {
 557             add_new_trait_selected_scale_val = '';
 558         }
 559         if (add_new_trait_selected_scale_val == '' && jQuery('#add_new_trait_scale_name').val() == '') {
 560             alert('Please select an existing scale or give a new scale name!');
 561             return false;
 562         }
 563         if (add_new_trait_selected_scale_val != '' && jQuery('#add_new_trait_scale_name').val() != '') {
 564             alert('Please select an existing scale or give a new scale name, and not both!');
 565             return false;
 566         }
 567         var selected = [];
 568         jQuery('input[name="add_new_trait_scale_ontology_select"]:checked').each(function(){
 569             selected.push(jQuery(this).val());
 570         });
 571         if (selected.length < 1) {
 572             alert('Please select one scale ontology!');
 573         } else if (selected.length > 1) {
 574             alert('Only select one scale ontology!');
 575         } else {
 576             if (add_new_trait_selected_scale_val == '') {
 577                 if (jQuery('#add_new_trait_scale_name').val() == ''){
 578                     alert('Please give a new scale name!');
 579                 }
 580                 else if (jQuery('#add_new_trait_scale_definition').val() == ''){
 581                     alert('Please give a new scale definition!');
 582                 }
 583                 else if (jQuery('#add_new_trait_scale_format').val() == ''){
 584                     alert('Please give a new scale format!');
 585                 }
 586                 else if (jQuery('#add_new_trait_scale_minimum').val() == ''){
 587                     alert('Please give a new scale minimum!');
 588                 }
 589                 else if (jQuery('#add_new_trait_scale_maximum').val() == ''){
 590                     alert('Please give a new scale maximum!');
 591                 }
 592                 else {
 593                     add_new_trait_new_scale_name = jQuery('#add_new_trait_scale_name').val();
 594                     add_new_trait_new_scale_definition = jQuery('#add_new_trait_scale_definition').val();
 595                     add_new_trait_new_scale_format = jQuery('#add_new_trait_scale_format').val();
 596                     add_new_trait_new_scale_minimum = jQuery('#add_new_trait_scale_minimum').val();
 597                     add_new_trait_new_scale_maximum = jQuery('#add_new_trait_scale_maximum').val();
 598                     add_new_trait_new_scale_default = jQuery('#add_new_trait_scale_default').val();
 599                     add_new_trait_new_scale_categories = jQuery('#add_new_trait_scale_categories').val();
 600                     Workflow.complete('#add_new_trait_scale_step');
 601                     Workflow.focus('#add_new_trait_workflow', 5);
 602                 }
 603             } else {
 604                 add_new_trait_selected_scale_cvterm_id = add_new_trait_selected_scale_val;
 605                 Workflow.complete('#add_new_trait_scale_step');
 606                 Workflow.focus('#add_new_trait_workflow', 5);
 607             }
 608         }
 609         return false;
 610     });
 611
 612     jQuery('#add_new_trait_submit_button').click(function(){
 613         jQuery.ajax ({
 614             url: '/ajax/onto/store_trait_method_scale_observation_variable',
 615             type: 'POST',
 616             data: {
 617                 'selected_observation_variable_db_id':add_new_trait_new_observation_variable_db_id,
 618                 'new_observation_variable_name':add_new_trait_new_observation_variable_name,
 619                 'new_observation_variable_definition':add_new_trait_new_observation_variable_definition,
 620                 'selected_trait_db_id':add_new_trait_new_trait_db_id,
 621                 'selected_trait_cvterm_id':add_new_trait_selected_trait_cvterm_id,
 622                 'new_trait_name':add_new_trait_new_trait_name,
 623                 'new_trait_definition':add_new_trait_new_trait_definition,
 624                 'selected_method_db_id':add_new_trait_new_method_db_id,
 625                 'selected_method_cvterm_id':add_new_trait_selected_method_cvterm_id,
 626                 'new_method_name':add_new_trait_new_method_name,
 627                 'new_method_definition':add_new_trait_new_method_definition,
 628                 'selected_scale_db_id':add_new_trait_new_scale_db_id,
 629                 'selected_scale_cvterm_id':add_new_trait_selected_scale_cvterm_id,
 630                 'new_scale_name':add_new_trait_new_scale_name,
 631                 'new_scale_definition':add_new_trait_new_scale_definition,
 632                 'new_scale_format':add_new_trait_new_scale_format,
 633                 'new_scale_minimum':add_new_trait_new_scale_minimum,
 634                 'new_scale_maximum':add_new_trait_new_scale_maximum,
 635                 'new_scale_default':add_new_trait_new_scale_default,
 636                 'new_scale_categories':add_new_trait_new_scale_categories,
 637             },
 638             beforeSend: function() {
 639                 jQuery("#working_modal").modal("show");
 640             },
 641             success: function(response){
 642                 console.log(response);
 643                 jQuery("#working_modal").modal("hide");
 644                 //if (response.message){
 645                 //    jQuery('#add_new_trait_added_observation_variable_div').html(response.message);
 646                 //    Workflow.complete('#add_new_trait_submit_button');
 647                 //    Workflow.focus("#add_new_trait_workflow", -1); //go to success page
 648                 //}
 649                 if (response.success) {
 650                     alert(response.success);
 651                 }
 652                 if (response.error) {
 653                     alert(response.error);
 654                 }
 655                 location.reload();
 656             },
 657             error: function(response){
 658                 jQuery("#working_modal").modal("hide");
 659                 alert("Error saving observation variable.");
 660             }
 661         });
 662     });
 663
 664     jQuery('#add_new_trait_observation_variable_ontology_step').click(function(){
 665         jQuery.ajax ({
 666             url: '/ajax/onto/store_ontology_identifier',
 667             type: 'POST',
 668             data: {
 669                 'ontology_name':jQuery('#add_new_observation_variable_ontology_name').val(),
 670                 'ontology_description':jQuery('#add_new_observation_variable_ontology_definition').val(),
 671                 'ontology_identifier':jQuery('#add_new_observation_variable_ontology_db_name').val(),
 672                 'ontology_type':jQuery('#add_new_observation_variable_ontology_type').val()
 673             },
 674             beforeSend: function() {
 675                 jQuery("#working_modal").modal("show");
 676             },
 677             success: function(response){
 678                 console.log(response);
 679                 jQuery("#working_modal").modal("hide");
 680                 //if (response.message){
 681                 //    Workflow.complete('#add_new_trait_observation_variable_ontology_step');
 682                 //    Workflow.focus("#add_new_ontology_workflow", -1); //go to success page
 683                 //}
 684                 if (response.success) {
 685                     alert(response.success);
 686                 }
 687                 if (response.error) {
 688                     alert(response.error);
 689                 }
 690                 location.reload();
 691             },
 692             error: function(response){
 693                 jQuery("#working_modal").modal("hide");
 694                 alert("Error saving ontology.");
 695             }
 696         });
 697     });
 698 });
 699 </script>