mason/breeders_toolbox/upload_pedigrees_dialogs.mas

   1 <%args>
   2 </%args>
   3
   4 <div class="modal fade" id="upload_pedigrees_validate_display" name="upload_pedigrees_validate_display" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesValidateDialog">
   5   <div class="modal-dialog modal-lg" role="document">
   6     <div class="modal-content">
   7       <div class="modal-header">
   8         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
   9         <h4 class="modal-title" id="uploadPedigreesValidateDialog">Results From Validation</h4>
  10       </div>
  11       <div class="modal-body">
  12         <div class="container-fluid">
  13             <div class="well">To Overwrite Parents In the Case That An Accession Already Has Male or Female Parents <input type="checkbox" checked id="pedigree_upload_overwrite_pedigrees" /></div>
  14           <table class="table table-hover">
  15             <tbody></tbody>
  16           </table>
  17         </div>
  18       </div>
  19       <div class="modal-footer">
  20         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
  21         <button type="button" class="btn btn-primary" name="upload_pedigrees_store" id="upload_pedigrees_store" data-dismiss="modal">Store</button>
  22       </div>
  23     </div>
  24   </div>
  25 </div>
  26
  27 <div class="modal fade" id="upload_pedigrees_error_display" name="upload_pedigrees_error_display" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesErrorDialog">
  28   <div class="modal-dialog modal-lg" role="document">
  29     <div class="modal-content">
  30       <div class="modal-header">
  31         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  32         <h4 class="modal-title" id="uploadPedigreesErrorDialog">Results From Validation</h4>
  33       </div>
  34       <div class="modal-body">
  35         <table class="table table-hover">
  36           <tbody></tbody>
  37         </table>
  38       </div>
  39       <div class="modal-footer">
  40         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
  41       </div>
  42     </div>
  43   </div>
  44 </div>
  45
  46 <div class="modal fade" id="pedigrees_upload_success_dialog_message" name="pedigrees_upload_success_dialog_message" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesSuccessDialog">
  47   <div class="modal-dialog modal-lg" role="document">
  48     <div class="modal-content">
  49       <div class="modal-header">
  50         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  51         <h4 class="modal-title" id="uploadPedigreesSuccessDialog">Upload Successful</h4>
  52       </div>
  53       <div class="modal-body">
  54         <div class="container-fluid">
  55           <h4>The Pedigree Upload Finished With No Errors.</h4>
  56         </div>
  57       </div>
  58       <div class="modal-footer">
  59         <button type="button" id="pedigrees_upload_success_dismiss" class="btn btn-default" data-dismiss="modal">Close</button>
  60       </div>
  61     </div>
  62   </div>
  63 </div>
  64
  65 <div class="modal fade" id="upload_pedigrees_dialog" name="upload_pedigrees_dialog" tabindex="-1" role="dialog" aria-labelledby="uploadPedigreesDialog">
  66     <div class="modal-dialog modal-lg" role="document">
  67         <div class="modal-content">
  68             <div class="modal-header">
  69                 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
  70                 <h4 class="modal-title" id="uploadPedigreesDialog">Upload Pedigrees</h4>
  71             </div>
  72             <div class="modal-body">
  73                 <div class="container-fluid">
  74                     <&| /page/explanation.mas, title=>'Template Information' &>
  75                         <p>
  76                             <b>File format information</b>
  77                             <br>
  78                             <a id="pedigrees_upload_spreadsheet_format_info">Spreadsheet Format</a>
  79                         </p>
  80                     </&>
  81                     <form method="post" enctype="multipart/form-data" encoding="multipart/form-data" id="upload_pedigrees_form" name="upload_pedigrees_form">
  82                         <div class="form-group">
  83                             <label class="col-sm-4 control-label">Upload Pedigree File: </label>
  84                             <div class="col-sm-8" >
  85                                 <input type="file" name="pedigrees_uploaded_file" id="pedigrees_uploaded_file" encoding="multipart/form-data" />
  86                             </div>
  87                         </div>
  88                     </form>
  89                 </div>
  90             </div>
  91             <div class="modal-footer">
  92                 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
  93                 <button type="button" class="btn btn-primary" name="upload_pedigrees_dialog_submit" id="upload_pedigrees_dialog_submit">Validate</button>
  94             </div>
  95         </div>
  96     </div>
  97 </div>
  98
  99 <div class="modal fade" id="pedigrees_upload_spreadsheet_info_dialog" name="pedigrees_upload_spreadsheet_info_dialog" tabindex="-1" role="dialog" aria-labelledby="pedigreeUploadInfoDialog">
 100   <div class="modal-dialog modal-xl" role="document">
 101     <div class="modal-content">
 102       <div class="modal-header">
 103         <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
 104         <h4 class="modal-title" id="pedigreeUploadInfoDialog">Template Information</h4>
 105       </div>
 106       <div class="modal-body">
 107         <div class="container-fluid">
 108         <& /help/file_upload_type.mas, type => "Pedigrees", optional_column => 0 &>
 109           <hr>
 110           <b>Header:</b>
 111           <br>
 112           <p>The first row (header) should contain the following:</p>
 113
 114           <table class="table table-hover table-bordered">
 115           <body>
 116             <tr>
 117               <td>progeny name</td>
 118               <td>female parent accession</td>
 119               <!--<td>male parent accession(s) (if more than one, separate using commas)</td>-->
 120               <td>male parent accession</td>
 121               <td>type</td>
 122
 123             </tr>
 124           </body>
 125           </table>
 126
 127           <h4>Required fields:</h4>
 128           <ul>
 129         <li>progeny name (must exist in the database and can be accession uniquename or accession synonym)</li>
 130         <li>female parent accession (must exist in the database)</li>
 131         <li>type (biparental, self, open, backcross, sib, polycross, reselected)</li>
 132             <ul class="a">
 133                 <li>cross type descriptions:</li>
 134                 <ul class="b">
 135                     <li>biparental: An individual plant pollinated by another individual plant.</li>
 136                     <li>self: A self pollinated individual plant.</li>
 137                     <li>open: An individual plant pollinated by a group of plants or open pollinated (pollen may be from a group with known or unknown members).</li>
 138                     <li>backcross: An individual plant pollinated by one of its parents.</li>
 139                     <li>sib: Mating between individuals that have at least one parent in common. Generally between two individuals within the same plot.</li>
 140                     <li>polycross: Mating between individual female parent from a population and the corresponding male population.</li>
 141                     <li>reselected: Selection of a new accession from an existing line (e.g. caused by a mutation).</li>
 142                     <li>doubled_haploid: Chromosome doubling of a haploid plant.</li>
 143                     <li>dihaploid_induction: Generation of dihaploids from a tetraploid plant.</li>
 144                 </ul>
 145             </ul>
 146       </ul>
 147
 148           <h4>Optional fields</h4>
 149           <ul>
 150         <li>male parent accession (can be accession uniquename or accession synonym or population name). Required for most cross types. </li>
 151           </ul>
 152
 153           <h4>Notes</h4>
 154           <ul>
 155             <li>Always specify the type of the cross (biparental, self, open, sib, backcross, polycross or reselected).</li>
 156             <li>If the type is open and no potential male parent is known, leave the male parent field empty.</li>
 157              <li>For all other cases, list both known parents, even if they are the same, such as in the case of self.</li>
 158           </ul>
 159         </div>
 160       </div>
 161       <div class="modal-footer">
 162         <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
 163       </div>
 164     </div>
 165   </div>
 166 </div>