mason/tools/motifs_finder/motif_output.mas

   1 <%args>
   2 $parameters => ""
   3 $res => ""
   4 $outfile => ""
   5 $weblogo_output => ""
   6 @logo => ""
   7 @logoID => ""
   8 $tfile => ""
   9 @logowidth => ""
  10 @motif_tab => ""
  11 @freq_tab => ""
  12 @prob_tab => ""
  13 @BGPM_tab => ""
  14 @sum_indv_tab => ""
  15 $sum => ""
  16 </%args>
  17
  18 <center>
  19
  20         <%perl>
  21
  22                 for (my $i = 0; $i < scalar(@logo); $i++){
  23                         #print "my index = $i <br\>";
  24                         print "<div class='well' style=\"width:90%\">";
  25                         #print "<b>Motif Sequence logo $logoID[$i], for Length $logowidth[$i]</b>\n <br/>";
  26                         print "<b>Motif Sequence logo $logoID[$i]</b>\n <br/>";
  27                         #print "<img src= \"/export/prod/tmp/motifs_finder/$logo[$i]\"><br/><br/><br/>";
  28                         print "<img src= \"/static/documents/tempfiles/motifs_finder/$logo[$i]\" ><br/><br/><br/>";
  29                         print "<b>Motif Table </b><br/>$motif_tab[$i]\n <br/><br/>" ;
  30                         print "<b>Motif Model (residue frequence x 100)</b><br\>$freq_tab[$i]\n <br\> ";
  31                         print "<b>Motif Probabilty Model </b><br\>$prob_tab[$i]\n <br/>" ;
  32                         print "<b>Background Probabilty Model </b> <br\>$BGPM_tab[$i]\n <br/>" ;
  33                         print "<b>Motif $logoID[$i] Log MAP Value</b><br\>$sum_indv_tab[$i]\n <br/>" ;
  34                         print "</div>";
  35                 }
  36
  37         </%perl>
  38
  39         <hr style="\&quot;color:" #006699;="" margin:="" 50px="" 20px;="" \"="">
  40         <h ><b>Motif Finder Result Summary</h></b><br/><br/><%  $sum %> <br/><br/><br/>
  41
  42 </center>
  43
  44 <style>
  45
  46         p.f1 {
  47         font: 15px courier, sans-serif;
  48         }
  49
  50 </style>
  51
  52 <center>
  53         <form action="/result", method="POST" >
  54
  55                 <input name="file_name" value="<% $outfile %>" style="display:none;">
  56                 <input name="output_file" value="<% $res %>" style="display:none;">
  57                 <button class="btn btn-primary"  id="button"  value="Download Result">Download Result</button>
  58         </form>
  59
  60                 <p><br/>
  61                 <a href="#top"  >Back to top</a> &nbsp &nbsp <!--<a href="javascript:javascript:history.go(-1)">Back to previous page</a> --> &nbsp &nbsp
  62                 <a id="back_to_input" href="/tools/motifs_finder">Go back to input page</a>
  63                 </p>
  64 </center>