static/documents/markers/role_categories.txt

   1 1 METABOLISM
   2          1.01 amino-acid metabolism
   3                1.01.01 amino-acid biosynthesis
   4                1.01.04 regulation of amino-acid metabolism
   5                1.01.10 amino-acid degradation (catabolism)
   6                1.01.99 other amino-acid metabolism activities
   7          1.02 nitrogen and sulphur metabolism
   8                1.02.01 nitrogen and sulphur utilization
   9                1.02.04 regulation of nitrogen and sulphur utilization
  10                1.02.99 other nitrogen and sulphur metabolism activities
  11           1.03 nucleotide metabolism
  12                1.03.01 purine-ribonucleotide metabolism
  13                1.03.04 pyrimidine-ribonucleotide metabolism
  14                1.03.07 deoxyribonucleotide metabolism
  15                1.03.10 metabolism of cyclic and unusual nucleotides
  16                1.03.13 regulation of nucleotide metabolism
  17                1.03.16 polynucleotide degradation
  18                     1.03.16.01 RNA degradation
  19                1.03.19 nucleotide transport
  20                1.03.99 other nucleotide-metabolism activities
  21           1.04 phosphate metabolism
  22                1.04.01 phosphate utilization
  23                1.04.04 regulation of phosphate utilization
  24                1.04.07 phosphate transport
  25                1.04.99 other phosphate metabolism activities
  26           1.05 C-compound and carbohydrate metabolism
  27                1.05.01 C-compound and carbohydrate utilization
  28                     1.05.01.01 C-compound, carbohydrate catabolism
  29                          1.05.01.01.01 sugar, glucoside, polyol and carboxylate catabolism
  30                          1.05.01.01.03 C-2 compound, organic acid and fatty acid catabolism
  31                     1.05.01.03 C-compound, carbohydrate anabolism
  32                          1.05.01.03.02 polysaccharide biosynthesis
  33                          1.05.01.03.04 aminosaccharide biosynthesis
  34                     1.05.01.05 autotrophic CO2-fixation
  35                1.05.04 regulation of C-compound and carbohydrate utilization
  36                1.05.07 C-compound, carbohydrate transport
  37                1.05.99 other carbohydrate metabolism activities
  38           1.06 lipid, fatty-acid and isoprenoid metabolism
  39                1.06.01 lipid, fatty-acid and isoprenoid biosynthesis
  40                    1.06.01.01 phospholipid biosynthesis
  41                    1.06.01.05 fatty acid biosynthesis
  42                    1.06.01.07 isoprenoid biosynthesis
  43                          1.06.01.07.11 tetracyclic and pentacyclic triterpenes (steroids and hopanoids) biosynthesis
  44                1.06.04 breakdown of lipids, fatty acids and isoprenoids
  45                1.06.07 lipid, fatty-acid and isoprenoid utilization
  46                1.06.10 regulation of lipid, fatty-acid and isoprenoid biosynthesis
  47                1.06.13 lipid and fatty-acid transport
  48                1.06.99 other lipid, fatty-acid and isoprenoid metabolism activities
  49           1.07 metabolism of vitamins, cofactors, and prosthetic groups
  50                1.07.01 biosynthesis of vitamins, cofactors, and prosthetic groups
  51                1.07.04 utilization of vitamins, cofactors, and prosthetic groups
  52           1.20 secondary metabolism
  53                1.20.01 metabolism of primary metabolic sugars derivatives
  54                     1.20.01.01 biosynthesis of secondary monosaccharides
  55                     1.20.01.07 biosynthesis of glycosides
  56                1.20.13 biosynthesis of derivatives of homoisopentenyl pyrophosphate
  57                1.20.15 biosynthesis of derivatives of dehydroquinic acid, shikimic acid and chorismic acid
  58                1.20.17 biosynthesis of secondary products derived from primary amino acids
  59                1.20.35.01 biosynthesis of stilbenes, flavonoids
  60                1.20.37 biosynthesis of peptide derived compounds
  61                1.20.99 other secondary metabolism activities
  62
  63      2 ENERGY
  64           2.01 glycolysis and gluconeogenesis
  65           2.07 pentose-phosphate pathway
  66                2.07.01 pentose-phosphate pathway oxidative branch
  67           2.10 tricarboxylic-acid pathway
  68           2.11 electron transport and membrane-associated energy conservation
  69                2.11.01 electron transport proteins
  70                2.11.03 ATP synthesis proteins
  71                2.11.05 accessory proteins of electron transport and membrane-associated energy conservation
  72                2.11.99 other electron transport and membrane-associated energy conservation proteins
  73           2.13 respiration
  74                2.13.01 anaerobic respiration
  75                2.13.05 aerobic respiration
  76           2.16 fermentation
  77                2.16.01 alcohol fermentation
  78           2.19 metabolism of energy reserves (glycogen, trehalose)
  79           2.22 glyoxylate cycle
  80           2.25 oxidation of fatty acids
  81           2.30 photosynthesis
  82                2.30.01electron transport proteins of photosynthesis
  83                2.30.03 accessory proteins of photosynthetic electron transport
  84           2.99 other energy generation activities
  85
  86      3 CELL GROWTH, CELL DIVISION AND DNA SYNTHESIS
  87           3.13 meiosis
  88           3.16 DNA synthesis and replication
  89           3.19 recombination and DNA repair
  90           3.99 other cell growth, cell division and DNA synthesis activities
  91
  92      4 TRANSCRIPTION
  93           4.01 rRNA transcription
  94                4.01.01 rRNA synthesis
  95                4.01.04 rRNA processing
  96                4.01.99 other rRNA-transcription activities
  97           4.03 tRNA transcription
  98                4.03.01 tRNA synthesis
  99                4.03.03 tRNA processing
 100                4.03.06 tRNA modification
 101                4.03.99 other tRNA-transcription activities
 102           4.05 mRNA transcription
 103                4.05.01 mRNA synthesis
 104                     4.05.01.01 general transcription activities
 105                     4.05.01.04 transcriptional control
 106                4.05.03 mRNA processing (splicing)
 107                4.05.05 mRNA processing (5'-, 3'-end processing, mRNA degradation)
 108                4.05.99 other mRNA-transcription activities
 109           4.99 other transcription activities
 110
 111     5 PROTEIN SYNTHESIS
 112           5.01 ribosomal proteins
 113           5.04 translation
 114           5.07 translational control
 115           5.10 tRNA-synthetases
 116           5.99 other protein-synthesis activities
 117
 118      6 PROTEIN DESTINATION
 119           6.01 protein folding and stabilization
 120           6.04 protein targeting, sorting and translocation 6.07
 121           6.07 protein modification
 122           6.10 assembly of protein complexes
 123           6.13 proteolysis
 124                6.13.01 cytoplasmic and nuclear degradation
 125                6.13.04 lysosomal and vacuolar degradation
 126                6.13.07 other proteolytic degradation
 127           6.99 other protein-destination activities
 128
 129     7 TRANSPORT FACILITATION
 130           7.01 channels/pores
 131           7.04 ion transporters
 132                7.04.01 metal ion transporters (Cu, Fe, etc.)
 133                7.04.03 other cation transporters (Na, K, Ca , NH4, etc.)
 134                7.04.99 anion transporters (Cl, SO4, PO4, etc.)
 135           7.07 C-compound and carbohydrate transporters
 136           7.22 transport ATPases
 137           7.25 ABC transporters
 138           7.99 other transport facilitators
 139
 140      8 CELLULAR TRANSPORT AND TRANSPORT MECHANISMS
 141           8.01  nuclear transport
 142           8.02 chloroplast transport
 143           8.04 mitochondrial transport
 144           8.07 vesicular transport (Golgi network, etc.)
 145           8.10 peroxisomal transport
 146           8.13 vacuolar transport
 147           8.16 extracellular transport (secretion)
 148           8.19 cellular import
 149           8.22 cytoskeleton-dependent transport
 150           8.99 other intracellular-transport activities
 151
 152     9 CELLULAR BIOGENESIS (proteins are not localized to the corresponding organelle)
 153           9.01 biogenesis of cell wall (cell envelope)
 154           9.03 biogenesis of plasma membrane
 155           9.04 biogenesis of cytoskeleton
 156           9.99 chloroplast biogenesis
 157
 158      10 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION
 159          10.01 intracellular communication
 160           10.03 unspecified signal transduction
 161           10.05 receptor proteins
 162           10.99 other unspecified signal transduction activities
 163
 164     11 CELL RESCUE, DEFENSE, CELL DEATH AND AGEING
 165           11.01 stress response
 166           11.03DNA repair
 167                11.03.01nucleotide excision repair
 168           11.05 Disease, virulence and defense
 169                11.05.01 resistance proteins
 170                11.05.03 defense related proteins
 171                11.05.05 virulence, disease factors
 172                      11.05.05.99   other virulence, disease factors
 173                11.05.99 other disease and defense related proteins
 174           11.07 detoxificaton
 175                11.07.01 detoxification involving cytochrome P450
 176                11.07.03 detoxification by modification
 177                11.07.99 other detoxification
 178           11.10 cell death and ageing
 179           11.10.09 degradation of exogenous ester compounds
 180           11.99 other cell rescue activities
 181
 182     13  IONIC HOMEOSTASIS
 183            13.04 ionic homeostasis
 184
 185      30 CELLULAR ORGANIZATION (proteins are localized to the corresponding organelle)
 186           30.01 organization of cell wall
 187           30.02 organization of plasma membrane
 188           30.03 organization of cytoplasm
 189           30.04 organization of cytoskeleton
 190           30.07 organization of endoplasmatic reticulum
 191           30.08 organization of Golgi
 192           30.09 organization of intracellular transport vesicles
 193           30.10 nuclear organization
 194           30.13 organization of chromosome structure
 195           30.16 mitochondrial organization
 196           30.19 peroxisomal organization
 197           30.25 vacuolar and lysosomal organization
 198           30.26 chloroplast organization
 199           30.99 other cellular organization
 200
 201     98 CLASSIFICATION NOT YET CLEAR-CUT
 202
 203     99 UNCLASSIFIED PROTEINS