cgi-bin/maps/pennellii_il/index.pl

   1 use strict;
   2 use CXGN::Page;
   3 my $page=CXGN::Page->new('index.html','html2pl converter');
   4 $page->header('L. pennellii Introgression lines (ILs)');
   5 print<<END_HEREDOC;
   6
   7   <center>
   8
   9     <table summary="" width="720" cellpadding="0" cellspacing="0"
  10     border="0">
  11       <tr>
  12         <td>
  13           <h3 align="center"><em>L. pennellii</em> Introgression
  14           lines (ILs)</h3>
  15
  16           <p>
  17           Congenic lines that differ in a single defined chromosome
  18           segment are useful for the study of complex phenotypes,
  19           as they allow isolation of the effect of a particular
  20           quantitative trait locus (QTL) from those of the entire
  21           genome. We developed a set of Lycopersicon
  22           pennellii-derived introgression lines (ILs) that together
  23           cover the entire genome in the background of L.
  24           esculentum Var. M82. This resource is very powerful for
  25           the study of genes affecting complex phenotypes.</p>
  26
  27           <p>The second generation IL population is composed of 76
  28           ILs (the 50 original lines and 26 new ILs), each
  29           containing a single introgression from L. pennellii (LA
  30           716) in the genetic background of the processing tomato
  31           variety M82. The IL map was connected to the
  32           high-resolution F2 map composed of 1500 markers. This was
  33           achieved by probing all of the specific chromosome lines
  34           with the RFLP markers from the framework F2 map. A total
  35           of 614 markers were probed and the ends of the
  36           introgressions were mapped with the resolution of the F2
  37           map.</p>
  38
  39           <p>The L. pennellii introgressed segments appear as solid
  40           bars in which the boundary edge of each segment is
  41           indicated by inclusive (+) and exclusive (-) RFLP
  42           markers. All ILs are homozygous for the introgressed
  43           segment except for part of IL8-1 (dashed line). Bins are
  44           designated by the chromosome number followed by a capital
  45           letter and indicate a unique area of IL overlap and
  46           singularity; it is important to note that some of the bin
  47           designations might change as more probing is done.
  48           Molecular and genetic markers are indicated to the right
  49           of each chromosome and the genetic distances (in cM)
  50           according to Tanksley et al. (1992) are indicated to the
  51           left.</p>
  52
  53           <p>Seed of the second generation ILs is presently being
  54           increased by <a href=
  55           "http://tgrc.ucdavis.edu">The C.M. Rick Tomato Genetics Resource
  56           Center, University of California Davis</a>
  57           and the ILs were assigned accession numbers LA4028 -
  58           LA4103.</p>
  59
  60           <ul>
  61             <li><a href="chr1.pl" target="_blank">Chromosome
  62             1</a></li>
  63
  64             <li><a href="chr2.pl" target="_blank">Chromosome
  65             2</a></li>
  66
  67             <li><a href="chr3.pl" target="_blank">Chromosome
  68             3</a></li>
  69
  70             <li><a href="chr4.pl" target="_blank">Chromosome
  71             4</a></li>
  72
  73             <li><a href="chr5.pl" target="_blank">Chromosome
  74             5</a></li>
  75
  76             <li><a href="chr6.pl" target="_blank">Chromosome
  77             6</a></li>
  78
  79             <li><a href="chr7.pl" target="_blank">Chromosome
  80             7</a></li>
  81
  82             <li><a href="chr8.pl" target="_blank">Chromosome
  83             8</a></li>
  84
  85             <li><a href="chr9.pl" target="_blank">Chromosome
  86             9</a></li>
  87
  88             <li><a href="chr10.pl" target="_blank">Chromosome
  89             10</a></li>
  90
  91             <li><a href="chr11.pl" target="_blank">Chromosome
  92             11</a></li>
  93
  94             <li><a href="chr12.pl" target="_blank">Chromosome
  95             12</a></li>
  96           </ul>
  97
  98           <p><u>IL References</u></p>
  99
 100           <p>Eshed Y, M Abu-Abied, Y Saranga, D Zamir (1992)
 101           Lycopersicon esculentum lines containing small
 102           overlapping introgressions from L. pennellii. Theor Appl
 103           Genet 83:1027-1034</p>
 104
 105           <p>Eshed Y and D. Zamir (1994) Introgressions from
 106           Lycopersicon pennellii can improve the soluble-solids
 107           yield of tomato hybrids. Theor Appl Genet 88:891-897.</p>
 108
 109           <p>Eshed Y and D. Zamir (1994) A genomic library of
 110           Lycopersicon pennellii in L. esculentum: A tool for fine
 111           mapping of genes. Euphytica 79:175-179.</p>
 112
 113           <p>Eshed Y and D Zamir (1995) An introgression line
 114           population of Lycopersicon pennellii in the cultivated
 115           tomato enables the identification and fine mapping of
 116           yield associated QTL. Genetics 141:1147-1162.</p>
 117
 118           <p>Eshed Y and D Zamir (1996) Less than additive
 119           epistatic interactions of QTL in tomato. Genetics
 120           143:1807-1817.</p>
 121
 122           <p>Eshed Y, G Gera and D Zamir (1996) A genome-wide
 123           search for wild-species alleles that increase
 124           horticultural yield of processing tomatoes Theor Appl
 125           Genet 93: 877-886.</p>
 126
 127           <p>Zamir D and Y Eshed (1998) Tomato genetics and
 128           breeding using nearly isogenic introgression lines
 129           derived from wild species. in: Molecular Dissection of
 130           Complex Traits. ed. AH Paterson. CRC Press Inc. Fl.
 131           207-217.</p>
 132
 133           <p>Qilin P, Yong-Sheng L, Budai-Hadrian O, Sela M,
 134           Carmel-Goren L, Zamir D and R Fluhr (2000) Comparative
 135           genetics of NBS-LRR resistance gene homologues in the
 136           genomes of two dicotyledons: tomato and Arabidopsis.
 137           Genetics 155: 309-322.</p>
 138
 139           <p>Fridman E, Pleban T and D Zamir (2000) A recombination
 140           hotspot delimits a wild species QTL for tomato sugar
 141           content to 484-bp within an invertase gene. Proc Natl
 142           Acad Sci USA 97: 4718-4723.</p>
 143         </td>
 144       </tr>
 145     </table>
 146
 147   </center>
 148 END_HEREDOC
 149 $page->footer();