mason/page/detail_page_2_col_section.mas

   1 <%args>
   2 $trial_id => undef
   3 $trial_name => undef
   4 $stock_id => undef
   5 $stock_uniquename => undef
   6 $col1_width_class => "col-sm-1"
   7 $col2_width_class => "col-sm-11"
   8 $icon_class => "glyphicon glyphicon-th"
   9 $info_section_collapsible => 1
  10 $info_section_collapsed => 1
  11 $info_section_id => "2col_id"
  12 $info_section_title => "A title"
  13 $info_section_subtitle => "A subtitle"
  14 $buttons_html => undef
  15 $locations_by_program_json => undef
  16
  17 #Trying to find the right one
  18 $project_id => undef
  19 $name => undef
  20
  21
  22 #Specific to trial detail page
  23 $has_plant_entries => undef
  24 $has_subplot_entries => undef
  25 $has_tissue_sample_entries => undef
  26 $has_expression_atlas => undef
  27 $expression_atlas_url => undef
  28 $site_project_name => undef
  29 $sgn_session_id => undef
  30 $user_name => undef
  31 $main_production_site_url => undef
  32 $trial_phenotype_files => undef
  33 $hidap_enabled => undef
  34 $location_name => undef
  35 $country_name => undef
  36 $breeding_program_name => undef
  37 $breeding_program_id => undef
  38 $year => undef
  39 $trial_type => undef
  40 $design_name => undef
  41 $planting_date => undef
  42 $transplanting_date => undef
  43 $harvest_date => undef
  44 $trial_description => undef
  45 $folder_name => undef
  46 $folder_id => undef
  47 $plot_width => undef
  48 $plot_length => undef
  49 $field_size => undef
  50 $field_trial_is_planned_to_be_genotyped => undef
  51 $field_trial_is_planned_to_cross => undef
  52 $identifier_prefix => undef
  53 $genotyping_facility => undef
  54 $management_factor_date => undef
  55 $management_factor_type => undef
  56 $trial_stock_type => undef
  57 $trial_stock_count => undef
  58 $trial_owner => undef
  59 $phenotypes_fully_uploaded => undef
  60 $user_can_modify => undef
  61 $latest_trial_activity => undef
  62 $has_col_and_row_numbers => undef
  63
  64 #Specific to stock detail page
  65 $type_name => undef
  66 $stockref => {}
  67 $stockprops => undef
  68 $edit_privs => undef
  69 $editable_stock_props => undef
  70 $editor_link => undef
  71 $source_dbs => {}
  72 $locus_add_uri => undef
  73 $new_locus_link => undef
  74 $allele_div => undef
  75 $is_owner => undef
  76 $map_html => undef
  77 $has_pedigree => undef
  78 $image_ids => undef
  79 $related_image_ids => undef
  80 $dbh => undef
  81 $trait_ontology_db_name => undef
  82 $pubs => undef
  83 $cvterm_add_uri => undef
  84 $referer => undef
  85
  86 #Specific to genotyping protocol detail page
  87 $protocol_id => undef
  88 $protocol_name => undef
  89 $protocol_description => undef
  90 $marker_names => []
  91 $header_information_lines => []
  92 $reference_genome_name => undef
  93 $species_name => undef
  94 $create_date => undef
  95 $sample_observation_unit_type_name => undef
  96 $marker_type => undef
  97 $genotype_data_type => undef
  98 $marker_info_headers => undef
  99 $assay_type => undef
 100
 101 #Specific to drone run detail page
 102 $drone_run_date => undef
 103 $id_extension => undef
 104
 105 #Specific to analysis detail page
 106 $analysis_metadata => undef
 107 $for_analysis_page => undef
 108 $data_level => undef
 109
 110 $program_id => undef
 111 $program_name => undef
 112
 113 #Specific to analysis model detail page
 114 $model_id => undef
 115 $model_name => undef
 116 $model_description => undef
 117 $model_properties => {}
 118 $model_file_ids => {}
 119 $model_type_name => undef
 120 $model_files => {}
 121
 122 #Specific to manage nirs page
 123 $nirs_files => undef
 124 $deleted_nirs_files => undef
 125 $all_nirs_files => undef
 126 $all_deleted_nirs_files => undef
 127 $locations => undef
 128 $sampling_facilities => ()
 129
 130 #Specific to analytics detail page
 131 $analytics_protocol_id => undef
 132 $analytics_protocol_name => undef
 133 $analytics_protocol_description => undef
 134 $analytics_protocol_type_id => undef
 135 $analytics_protocol_type_name => undef
 136 $analytics_protocol_create_date => undef
 137 $analytics_protocol_properties => {}
 138 $analytics_protocol_result_summary => {}
 139
 140 #Specific to activity page
 141 $vendor_id => undef
 142
 143 </%args>
 144
 145 <& /util/import_javascript.mas,
 146    classes => ["jquery", "jqueryui", "thickbox", "CXGN.Page.FormattingHelpers", "jquery.cookie", "CXGN.Stock", "d3.d3v4Min" ],
 147   entries => ["sequenced_accessions"]
 148 &>
 149
 150 <div class="row">
 151     <div class="col-sm-12">
 152         <div class="well">
 153             <div class="row">
 154                 <div class="<% $col1_width_class %>">
 155                     <span style="font-size:3.5em;" class="<% $icon_class %>"></span>
 156                 </div>
 157                 <div class="<% $col2_width_class %>">
 158
 159                     <&| /page/info_section.mas, id => $info_section_id, title => $info_section_title, collapsible=>$info_section_collapsible, collapsed => $info_section_collapsed, subtitle=> $info_section_subtitle &>
 160
 161 % if ($buttons_html){
 162                         <div class="panel panel-default">
 163                             <div class="panel-body">
 164                                 <% $buttons_html %>
 165                             </div>
 166                         </div>
 167 % }
 168
 169                         <div class="panel panel-default">
 170                             <div class="panel-body">
 171
 172 % if ($info_section_id eq 'pheno_heatmap'){
 173                                 <& /breeders_toolbox/trial/phenotype_heatmap.mas, trial_id => $trial_id, data_level => $data_level, has_col_and_row_numbers => $has_col_and_row_numbers &>
 174 % } #End pheno_heatmap
 175 % if ($info_section_id eq 'trial_design_section'){
 176                                 <& /breeders_toolbox/trial/design_section.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name, trial_stock_type => $trial_stock_type &>
 177 % } #End trial_design_section
 178 % if ($info_section_id eq 'trial_detail_traits_assayed'){
 179
 180 % if ($has_expression_atlas) {
 181                                 <& /breeders_toolbox/trial/export_trial_to_expression_atlas.mas, trial_id => $trial_id, trial_name=>$trial_name, expression_atlas_url=>$expression_atlas_url, site_project_name=>$site_project_name, sgn_session_id=>$sgn_session_id, user_name=>$user_name, main_production_site_url=>$main_production_site_url &>
 182 % }
 183
 184                                 <& /breeders_toolbox/trial/phenotype_summary.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 185
 186 % } #End trial_detail_traits_assayed
 187
 188 % if ($info_section_id eq 'trial_raw_data') {
 189    <& /breeders_toolbox/trial/trial_raw_data.mas, trial_id => $trial_id, trial_stock_type => $trial_stock_type &>
 190 % }
 191
 192
 193 % if ($info_section_id eq 'compute_derived_traits'){
 194                                 <& /breeders_toolbox/trial/derived_trait.mas, trial_id => $trial_id &>
 195 % } #End compute_derived_traits
 196 % if ($info_section_id eq 'trial_upload_files'){
 197                                 <& /breeders_toolbox/trial/files_section.mas, trial_id => $trial_id, trial_phenotype_files => $trial_phenotype_files, trial_stock_type => $trial_stock_type, for_analysis_page => $for_analysis_page &>
 198 % } #End trial_upload_files
 199 % if ($info_section_id eq 'trial_analysis_tools'){
 200
 201
 202                                 <!-- analysis tools on saved measurements -->
 203                                <& /breeders_toolbox/trial/saved_measurement_analysis.mas,
 204                                      trial_id => $trial_id
 205                                 &>
 206                                 <!-- Phenotypic correlation analysis -->
 207                                 <& /solgs/tools/correlation/analysis.mas,
 208                                     corr_pop_id => $trial_id
 209                                 &>
 210
 211                                 <& /solgs/tools/anova/analysis.mas,
 212                                     trial_id => $trial_id
 213                                 &>
 214
 215                                  <!-- Population structure analysis PCA -->
 216                                 <& /solgs/tools/pca/analysis.mas,
 217                                     trial_id => $trial_id
 218                                   &>
 219
 220                                 <!-- Clustering -->
 221                                 <& /solgs/tools/cluster/analysis.mas,
 222                                     trial_id => $trial_id
 223                                   &>
 224
 225                                 <!-- kinship and inbreeding-->
 226                                 <& /solgs/tools/kinship/analysis.mas,
 227                                     trial_id => $trial_id
 228                                 &>
 229
 230
 231                                   <& /tools/heritability/heritability.mas,
 232                                     trial_id => $trial_id
 233                                 &>
 234
 235                                 <& /solgs/population/trait_acronyms.mas,
 236                                   trial_id => $trial_id
 237                               &>
 238
 239 % if ($c->req->base =~ /sweetpotatobase/) {
 240                                 <& /tools/qualityControl/qualityControl.mas,
 241                                     trial_id => $trial_id
 242                                 &>
 243 % }
 244
 245 % if ($hidap_enabled) {
 246                                 <& /hidap/hidap_trial_link.mas, main_production_site_url=>$main_production_site_url, program => $breeding_program_name, folder => $folder_name, trial => $trial_name &>
 247 % }
 248 % } #End trial_analysis_tools
 249 % if ($info_section_id eq 'trial_weather_data'){
 250                                 <& /breeders_toolbox/trial/weather.mas, location => $location_name &>
 251 % } #End trial_weather_data
 252 % if ($info_section_id eq 'trial_jbrowse_data'){
 253                                 <& /breeders_toolbox/trial/jbrowse_instance.mas, trial_id => $trial_id &>
 254 %} #End trial_jbrowse_data
 255 % if ($info_section_id eq 'trial_linkage_section'){
 256                                 <&| /page/info_section.mas, title => 'Field Trial to Field Trial Linkage', id => 'field_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 257                                     <& /breeders_toolbox/trial/field_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => $trial_type, trial_name=>$trial_name &>
 258                                 </&>
 259                                 <&| /page/info_section.mas, title => 'Field Trial to Genotyping Plate Linkage', id => 'genotyping_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 260                                     <& /breeders_toolbox/trial/genotyping_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 261                                 </&>
 262                                 <&| /page/info_section.mas, title => 'Field Trial to Crossing Experiment Linkage', id => 'crossing_trial_from_field_trial_section', collapsible => 1, collapsed => 1 &>
 263                                     <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'field_trial' &>
 264                                 </&>
 265 %} #End trial_linkage_section
 266 % if ($info_section_id eq 'trial_deletion_section'){
 267                                 <&| /page/info_section.mas, title=>'Delete trial data', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 268                                     <& /breeders_toolbox/trial/trial_deletion.mas, trial_id => $trial_id  &>
 269                                 </&>
 270 %} #End trial_deletion_section
 271 % if ($info_section_id eq 'trial_data_agreement_section'){
 272                                 <& /breeders_toolbox/data_agreement.mas, trial_id => $trial_id &>
 273 % } #End trial_data_agreement_section
 274 % if ($info_section_id eq 'trial_status_section'){
 275                                 <& /breeders_toolbox/trial/trial_status.mas, trial_id => $trial_id, trial_name => $trial_name, breeding_program_name => $breeding_program_name, location_name => $location_name, year => $year, trial_type => $trial_type, planting_date => $planting_date, transplanting_date => $transplanting_date, harvest_date => $harvest_date, trial_description => $trial_description, folder_id => $folder_id, design_name => $design_name, has_plant_entries => $has_plant_entries, phenotypes_fully_uploaded => $phenotypes_fully_uploaded, user_can_modify => $user_can_modify, user_name => $user_name &>
 276 % } #End trial_status_section
 277 % if ($info_section_id eq 'trial_soil_data_section'){
 278                                 <& /breeders_toolbox/trial/trial_soil_data.mas, trial_id => $trial_id &>
 279 % } #End trial_soil_data_section
 280
 281
 282 % if ($info_section_id eq 'stock_additional_info_section'){
 283                                 <& /stock/additional_info_section.mas, stock_id => $stock_id, type_name => $type_name, stockprops => $stockprops, edit_privs => $edit_privs, editable_stock_props => $editable_stock_props, editor_link => $editor_link, source_dbs => $source_dbs, locus_add_uri => $locus_add_uri, allele_div => $allele_div, is_owner => $is_owner &>
 284 % } #End stock_additional_info_section
 285 % if ($info_section_id eq 'stock_trials_section'){
 286                                 <& /stock/trials.mas, stock_id => $stock_id, type_name => $type_name, trial_id => $trial_id, trial_name => $trial_name, name => $name, project_id => $project_id&>
 287 % } #End stock_trials_section
 288 % if ($info_section_id eq 'stock_upload_files'){
 289                                 <& /stock/accession_files.mas, stock_id => $stock_id &>
 290 % } #End stock_upload_files
 291 % if ($info_section_id eq 'stock_traits_section'){
 292                                 <& /stock/traits.mas, stock_id => $stock_id &>
 293 % } #End stock_traits_section
 294 % if ($info_section_id eq 'stock_genotypes_section'){
 295                                 <& /stock/direct_genotypes.mas, stock_id => $stock_id, map_html => $map_html &>
 296 % } #End stock_genotypes_section
 297 % if ($info_section_id eq 'stock_pedigree_section'){
 298                                 <&| /page/info_section.mas, title=>"Pedigree and Descendants" , collapsible=> 0, collapsed=>0 &>
 299                                     <& /pedigree/stock_pedigree.mas, stock_id => $stock_id, has_pedigree => $has_pedigree &>
 300                                 </&>
 301
 302                                 <& /pedigree/stock_pedigree_string.mas, stock_id => $stock_id &>
 303 % } #End stock_pedigree_section
 304 % if ($info_section_id eq 'stock_related_stock_section'){
 305                                 <& /stock/related_stock.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename, stock_type => $type_name &>
 306 % } #End stock_related_stock_section
 307 % if ($info_section_id eq 'vector_related_stocks_section'){
 308                                 <& /stock/vector_related_stocks.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename, stock_type => $type_name &>
 309 % } #End vector_related_stocks_section
 310
 311 % if ($info_section_id eq 'stock_images_section'){
 312                                 <& /image/compare_images.mas, stock_id => $stock_id &>
 313
 314                                 <&| /page/info_section.mas, title=>"Images of This Stock(" .  scalar(@$image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 315                                     <& /image/print_images.mas , images=>$image_ids , dbh=>$dbh, additional_image_button_id=>'stock_images' &>
 316                                 </&>
 317
 318                                 <&| /page/info_section.mas, title=>"Images of Related Stock(s) (" .  scalar(@$related_image_ids)  . ")", collapsible=>1, collapsed=>0 &>
 319                                     <& /image/print_images.mas , images=>$related_image_ids , dbh=>$dbh, additional_image_button_id=>'related_stock_images' &>
 320                                 </&>
 321 % } #End stock_images_section
 322 % if ($info_section_id eq 'stock_sequencing_status_section'){
 323                                 <& /stock/sequencing_status.mas, stock_id => $stock_id &>
 324 % } #End stock audit section
 325 % if($info_section_id eq 'audit_table_section'){
 326         <& /stock/audit.mas, stock_id => $stock_id, stock_uniquename => $stock_uniquename&>
 327 % } #End TRIALS audit section
 328 % if($info_section_id eq 'trial_audit_table_section'){
 329         <& /breeders_toolbox/trial/trial_audit.mas, trial_id => $trial_id, project_id => $project_id&>
 330 % } #End stock requencing status section
 331 % if ($info_section_id eq 'stock_literature_annotation_section'){
 332                                 <&| /page/info_section.mas, title=>"Literature annotation (".scalar( @$pubs ).")" , id=>"publications" , collapsible=>1, collapsed=>1 &>
 333
 334
 335 % foreach my $publication ( @$pubs  ) {
 336   <& /chado/publication.mas, pub=>$publication &>
 337     <br >
 338 % }
 339
 340                                 </&>
 341
 342                                 <&| /page/info_section.mas, id   => 'stock_ontology', title=>"Ontology annotation (" . $stockref->{ontology_count} . ")" &>
 343                                     <& /ontology/associate_ontology.mas,
 344                                     trait_db_name => $trait_ontology_db_name,
 345                                     object_id     => $stock_id ,
 346                                     object_name   => "stock",
 347                                     cvterm_add_uri=> $cvterm_add_uri,
 348                                     ontology_url  => "/stock/$stock_id/ontologies/",
 349                                     reference_uri => "/stock/$stock_id/references/",
 350                                     evidence_with_uri => "/stock/$stock_id/evidences/",
 351                                     show_form     => $is_owner  &>
 352                                 </&>
 353 % } #End stock_literature_annotation_section
 354 % if ($info_section_id eq 'stock_jbrowse_section'){
 355                                 <p id="jbrowse_check">[loading...]</p>
 356 % } #End stock_jbrowse_section
 357 % if ($info_section_id eq 'stock_comments_section'){
 358                                 <& /page/comments.mas, object_type=>'stock', object_id=>$stock_id, referer=>$referer &>
 359 % } #End stock_comments_section
 360 % if ($info_section_id eq 'stock_delete_section'){
 361                                 <& /stock/delete.mas, stock_id=>$stock_id &>
 362 % } #End stock_delete_section
 363 % if ($info_section_id eq 'population_delete_section'){
 364                                 <& /stock/population_delete.mas, stock_id=>$stock_id, stock_uniquename=>$stock_uniquename &>
 365 % } #End population_delete_section
 366 % if ($info_section_id eq 'population_members_section'){
 367                                 <& /stock/population_members.mas, stock_id=>$stock_id &>
 368 % } #End population_members_section
 369 % if ($info_section_id eq 'manage_tissue_samples_field_trials'){
 370                                 <& /breeders_toolbox/tissue_samples/field_trials_with_tissue_samples.mas &>
 371 % } #End manage_tissue_samples_field_trials
 372 % if ($info_section_id eq 'manage_tissue_samples_genotyping_trials'){
 373                                 <& /breeders_toolbox/tissue_samples/genotyping_trials.mas &>
 374 % } #End manage_tissue_samples_genotyping_trials
 375 % if ($info_section_id eq 'manage_tissue_samples_sampling_trials'){
 376                                 <& /breeders_toolbox/tissue_samples/sampling_trials.mas &>
 377 % } #End manage_tissue_samples_sampling_trials
 378 % if ($info_section_id eq 'trial_details'){
 379                                 <& /breeders_toolbox/trial/trial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_type=>$trial_type, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, plot_width=>$plot_width, plot_length=>$plot_length, field_size=>$field_size, field_trial_is_planned_to_be_genotyped=>$field_trial_is_planned_to_be_genotyped, field_trial_is_planned_to_cross=>$field_trial_is_planned_to_cross, trial_stock_type => $trial_stock_type, trial_stock_count => $trial_stock_count, trial_owner => $trial_owner, latest_trial_activity => $latest_trial_activity &>
 380 % } #End trial_details
 381 % if ($info_section_id eq 'stocks_search_graphical_filtering'){
 382                                 <& /search/stocks_graphicalfiltering.mas &>
 383 % } #End stocks_search_graphical_filtering
 384
 385
 386 % if ($info_section_id eq 'genotyping_data_project_details'){
 387                                 <& /breeders_toolbox/genotyping_data_project/details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, year=>$year, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, genotyping_facility => $genotyping_facility, genotype_data_type => $genotype_data_type, trial_owner => $trial_owner &>
 388 % } #End genotyping_data_project_details
 389 % if ($info_section_id eq 'genotyping_data_project_protocols'){
 390                                 <& /breeders_toolbox/genotyping_data_project/protocols.mas, trial_id=>$trial_id &>
 391 % } #End genotyping_data_project_protocols
 392 % if ($info_section_id eq 'genotyping_data_project_data'){
 393                                 <& /breeders_toolbox/genotyping_data_project/genotype_data.mas, trial_id=>$trial_id &>
 394 % } #End genotyping_data_project_data
 395 % if ($info_section_id eq 'genotyping_project_plates'){
 396                                 <& /breeders_toolbox/genotyping_data_project/genotyping_plates.mas, trial_id=>$trial_id &>
 397 % } #End genotyping_project_plates
 398 % if ($info_section_id eq 'genotyping_data_archived_vcf') {
 399                                 <& /breeders_toolbox/genotyping_data_project/genotype_archived_vcf.mas, trial_id=>$trial_id &>
 400 % } #End genotyping_data_archived_vcf
 401 % if ($info_section_id eq 'genotyping_project_deletion_section'){
 402                                 <& /breeders_toolbox/genotyping_data_project/genotyping_project_deletion.mas, trial_id=>$trial_id &>
 403 % } #End genotyping_project_deletion_section
 404 % if ($info_section_id eq 'project_pcr_genotype_data'){
 405                                 <& /breeders_toolbox/genotyping_data_project/pcr_genotype_data.mas, trial_id => $trial_id, marker_names => $marker_names &>
 406 % } #End project_pcr_genotype_data
 407
 408
 409 % if ($info_section_id eq 'identifier_generation_list'){
 410                                 <& /breeders_toolbox/identifier_generation/list_identifier_generation.mas &>
 411 % } #End identifier_generation_list
 412 % if ($info_section_id eq 'management_factor_details'){
 413                                 <& /breeders_toolbox/trial/management_factor_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, year=>$year, management_factor_type=>$management_factor_type, management_factor_date=>$management_factor_date &>
 414 % } #End management_factor_details
 415 % if ($info_section_id eq 'management_factor_design'){
 416                                 <& /breeders_toolbox/trial/design_section_management_factor.mas, trial_id => $trial_id, trial_name => $trial_name, has_subplot_entries => $has_subplot_entries, has_plant_entries => $has_plant_entries, has_tissue_sample_entries => $has_tissue_sample_entries, design_name => $design_name &>
 417 % } #End management_factor_design
 418
 419 % if ($info_section_id eq 'genotyping_protocol_details'){
 420                                 <& /breeders_toolbox/genotyping_protocol/details.mas, protocol_id => $protocol_id, protocol_name => $protocol_name, protocol_description => $protocol_description, marker_names => $marker_names, header_information_lines => $header_information_lines, reference_genome_name => $reference_genome_name, species_name => $species_name, create_date => $create_date, sample_observation_unit_type_name => $sample_observation_unit_type_name, marker_type => $marker_type, assay_type => $assay_type &>
 421 % } #End genotyping_protocol_details
 422 % if ($info_section_id eq 'genotyping_protocol_markers'){
 423                                 <& /breeders_toolbox/genotyping_protocol/markers.mas, protocol_id => $protocol_id, marker_info_headers => $marker_info_headers &>
 424 % } #End genotyping_protocol_markers
 425 % if ($info_section_id eq 'genotyping_protocol_genotype_data'){
 426                                 <& /breeders_toolbox/genotyping_protocol/genotype_data.mas, protocol_id => $protocol_id &>
 427 % } #End genotyping_protocol_genotype_data
 428 % if ($info_section_id eq 'genotyping_protocol_delete_genotype_data') {
 429                                 <& /breeders_toolbox/genotyping_protocol/delete_genotype_data.mas, protocol_id => $protocol_id &>
 430 % }
 431 % if ($info_section_id eq 'pcr_based_genotyping_markers'){
 432                                 <& /breeders_toolbox/genotyping_protocol/pcr_markers.mas, protocol_id => $protocol_id &>
 433 % } #End pcr_based_genotyping_markers
 434 % if ($info_section_id eq 'pcr_genotyping_protocol_genotype_data'){
 435                                 <& /breeders_toolbox/genotyping_protocol/pcr_genotype_data.mas, protocol_id => $protocol_id, marker_names => $marker_names &>
 436 % } #End pcr_genotyping_protocol_genotype_data
 437
 438
 439
 440 % if ($info_section_id eq 'crossingtrial_details'){
 441                                 <& /breeders_toolbox/cross/crossingtrial_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, planting_date=>$planting_date, transplanting_date=>$transplanting_date, harvest_date=>$harvest_date, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner &>
 442 % } #End crossingtrial_details
 443
 444 % if ($info_section_id eq 'target_numbers_crossingtrial_section'){
 445                                 <& /breeders_toolbox/cross/target_numbers.mas, trial_id=>$trial_id &>
 446 % } #End target_numbers_crossingtrial_section
 447
 448 % if ($info_section_id eq 'crosses_in_crossingtrial_section'){
 449                                 <& /breeders_toolbox/cross/crosses_in_crossingtrial.mas, trial_id=>$trial_id &>
 450 % } #End crosses_in_crossingtrial_section
 451
 452 % if ($info_section_id eq 'additional_info_crossingtrial_section'){
 453                                 <& /breeders_toolbox/cross/cross_additional_info_crossingtrial.mas, trial_id=>$trial_id &>
 454 % } #End additional_info_crossingtrial_section
 455
 456 % if ($info_section_id eq 'cross_properties_crossingtrial_section'){
 457                                 <& /breeders_toolbox/cross/cross_properties_crossingtrial.mas, trial_id=>$trial_id &>
 458 % } #End cross_properties_crossingtrial_section
 459
 460 % if ($info_section_id eq 'progenies_in_crossingtrial_section'){
 461                                 <& /breeders_toolbox/cross/progenies_in_crossingtrial.mas, trial_id=>$trial_id &>
 462 % } #End progenies_in_crossingtrial_section
 463
 464 % if ($info_section_id eq 'seedlots_from_crossingtrial_section'){
 465                                 <& /breeders_toolbox/cross/seedlots_from_crossingtrial.mas, trial_id=>$trial_id, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, locations_by_program_json=>$locations_by_program_json &>
 466 % } #End seedlots_from_crossingtrial_section
 467
 468 % if ($info_section_id eq 'crossing_trial_from_field_trial_section'){
 469                                 <& /breeders_toolbox/trial/crossing_trial_from_field_trial_linkage.mas, trial_id => $trial_id, trial_type => 'crossing_trial' &>
 470 % } #End crossing_trial_from_field_trial_section
 471
 472 % if ($info_section_id eq 'marker_set_summary_section'){
 473                                 <& /breeders_toolbox/markers/marker_set_summary.mas &>
 474 % } #End marker_set_summary_section
 475
 476 % if ($info_section_id eq 'crossing_experiment_deletion_section'){
 477                                 <& /breeders_toolbox/cross/crossing_experiment_deletion.mas, trial_id => $trial_id  &>
 478 %} #End crossing_experiment_deletion_section
 479
 480 % if ($info_section_id eq 'intercross_section'){
 481                                 <& /breeders_toolbox/cross/intercross_file_info.mas, trial_id => $trial_id  &>
 482 %} #End intercross_section
 483
 484 % if ($info_section_id eq 'progeny_search_section'){
 485                                 <& /search/cross/progeny_search_section.mas &>
 486 %} #End progeny_search_section
 487
 488 % if ($info_section_id eq 'cross_search_section'){
 489                                 <& /search/cross/cross_search_section.mas &>
 490 %} #End cross_search_section
 491
 492 % if ($info_section_id eq 'parent_search_section'){
 493                                 <& /search/cross/parent_search.mas &>
 494 %} #End parent_search_section
 495
 496 % if ($info_section_id eq 'all_cross_entries_section'){
 497                                 <& /breeders_toolbox/cross/all_cross_entries.mas &>
 498 %} #End all_cross_entries_section
 499
 500 % if ($info_section_id eq 'manage_nirs_main'){
 501                                 <& /tools/nirs/manage_nirs_main.mas, nirs_files => $nirs_files, deleted_nirs_files => $deleted_nirs_files, all_nirs_files => $all_nirs_files, all_deleted_nirs_files => $all_deleted_nirs_files, locations => $locations, sampling_facilities=>$sampling_facilities &>
 502 % } #End manage_nirs_main
 503
 504 % if ($info_section_id eq 'manage_sequence_metadata'){
 505     <& /tools/sequence_metadata/manage_sequence_metadata_main.mas &>
 506 % } #End manage_smd_main
 507
 508 % if ($info_section_id eq 'manage_drone_imagery_main'){
 509                                 <& /breeders_toolbox/drone_imagery/raw_image_section.mas &>
 510 % } #End manage_drone_imagery_main
 511
 512 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_section'){
 513                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_section.mas, id_extension=>$id_extension &>
 514 % } #End manage_drone_imagery_generate_plot_polygons_section
 515 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section'){
 516                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section.mas, id_extension=>$id_extension &>
 517 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section
 518 % if ($info_section_id eq 'manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points'){
 519                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_raw_images_section_ground_control_points.mas &>
 520 % } #End manage_drone_imagery_generate_plot_polygons_standard_process_raw_images_section_ground_control_points
 521 % if ($info_section_id eq 'manage_drone_imagery_standard_process_generate_plot_polygons_section'){
 522                                 <& /breeders_toolbox/drone_imagery/generate_plot_polygons_standard_process_section.mas &>
 523 % } #End manage_drone_imagery_standard_process_generate_plot_polygons_section
 524 % if ($info_section_id eq 'drone_run_project_details'){
 525                                 <& /breeders_toolbox/drone_imagery/drone_run_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, identifier_prefix=>$identifier_prefix, drone_run_date=>$drone_run_date &>
 526 % } #End trial_details
 527 % if ($info_section_id eq 'analysis_details'){
 528                                 <& /analyses/analysis_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, trial_description=>$trial_description, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, year=>$year, identifier_prefix=>$identifier_prefix, trial_stock_type => $trial_stock_type, analysis_metadata=>$analysis_metadata &>
 529 % } #End analysis_details
 530 % if ($info_section_id eq 'analysis_page_analysis_tools'){
 531                                 <& /breeders_toolbox/trial/correlation_workflow.mas, trial_id => $trial_id, is_analysis => 1 &>
 532
 533                                 <& /breeders_toolbox/trial/time_series_accessions_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 534
 535                                 <& /breeders_toolbox/trial/accession_rank_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 536
 537                                 <& /breeders_toolbox/trial/genotype_comparison_workflow.mas, trial_id => $trial_id, data_level=>'analysis_instance' &>
 538 % }
 539 % if ($info_section_id eq 'model_details'){
 540                                 <& /analyses/model_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, analysis_metadata=>$analysis_metadata &>
 541 % } #End analysis_details
 542 % if ($info_section_id eq 'analysis_model_details'){
 543                                 <& /analyses/model_detail_page_section.mas, model_id => $model_id, model_name => $model_name, model_description => $model_description, model_properties => $model_properties, model_file_ids => $model_file_ids, model_type_name => $model_type_name, model_files => $model_files, identifier_prefix => $identifier_prefix &>
 544 % } #End analysis_model_details
 545 % if ($info_section_id eq 'model_analyses'){
 546                                 <& /analyses/model_detail_page_analyses_section.mas, model_id => $model_id &>
 547 % } #End model_analyses
 548 % if ($info_section_id eq 'analytics_protocol_details'){
 549                                 <& /analytics_protocols/analytics_protocols_details.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name, analytics_protocol_description=>$analytics_protocol_description, analytics_protocol_type_id=>$analytics_protocol_type_id, analytics_protocol_type_name=>$analytics_protocol_type_name, analytics_protocol_create_date=>$analytics_protocol_create_date, analytics_protocol_properties=>$analytics_protocol_properties, analytics_protocol_result_summary=>$analytics_protocol_result_summary &>
 550 % } #End analytics_protocol_details
 551 % if ($info_section_id eq 'analytics_protocol_result_files'){
 552                                 <& /analytics_protocols/analytics_protocols_result_files.mas, analytics_protocol_id=>$analytics_protocol_id, analytics_protocol_name=>$analytics_protocol_name &>
 553 % } #End analytics_protocol_result_files
 554 % if ($info_section_id eq 'model_deletion_section'){
 555                                 <&| /page/info_section.mas, title=>'Delete model', subtitle=>'<font color="red" role="">Deletion cannot be undone</font>', collapsed=>1, collapsible=>1 &>
 556                                     <& /analyses/model_deletion.mas, model_id => $model_id  &>
 557                                 </&>
 558 % } #End model_deletion_section
 559 % if ($info_section_id eq 'manage_file_share_dump'){
 560                                 <& /breeders_toolbox/file_share/file_dump_share_files.mas &>
 561 % } #End manage_file_share_dump
 562
 563 % if ($info_section_id eq 'program_location_section'){
 564                                 <& /breeders_toolbox/program/program_locations.mas, program_id => $program_id &>
 565 % } #End program_location_section
 566 % if ($info_section_id eq 'program_project_section'){
 567                                 <& /breeders_toolbox/program/program_project_section.mas, program_id => $program_id &>
 568 % } #End program_project_section
 569 % if ($info_section_id eq 'program_stock_section'){
 570                                 <& /breeders_toolbox/program/program_stock_section.mas, program_id => $program_id &>
 571 % } #End program_stock_section
 572 % if ($info_section_id eq 'program_phenotype_section'){
 573                                 <& /breeders_toolbox/program/traits.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 574 % } #End program_phenotype_section
 575 % if ($info_section_id eq 'program_product_profile_section'){
 576                                 <& /breeders_toolbox/program/product_profile.mas, program_id => $program_id, collapse_phenotypes_section => 0 &>
 577 % } #End program_product_profile_section
 578
 579 % if ($info_section_id eq 'activity_project_details'){
 580                                 <& /tracking_activities/activity_project_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner, vendor_id => $vendor_id &>
 581 % } #End activity_project_details
 582 % if ($info_section_id eq 'active_tracking_identifiers_section'){
 583                                 <& /tracking_activities/active_tracking_identifiers.mas, trial_id=>$trial_id &>
 584 % } #End active_tracking_identifiers_section
 585
 586 % if ($info_section_id eq 'transformation_project_details'){
 587                                 <& /transformation/transformation_project_details.mas, trial_id=>$trial_id, trial_name=>$trial_name, breeding_program_name=>$breeding_program_name, breeding_program_id=>$breeding_program_id, location_name=>$location_name, country_name=>$country_name, year=>$year, trial_description=>$trial_description, folder_name=>$folder_name, folder_id=>$folder_id, identifier_prefix=>$identifier_prefix, trial_owner => $trial_owner &>
 588 % } #End transformation_project_details
 589 % if ($info_section_id eq 'transformations_in_project_section'){
 590                                 <& /transformation/transformations_in_project.mas, trial_id=>$trial_id &>
 591 % } #End transformations_in_project_section
 592
 593 % if (!$info_section_id){
 594                                 <p>No section specified! Main content goes here!</p>
 595 % }
 596
 597                             </div>
 598                         </div>
 599                     </&>
 600                 </div>
 601             </div>
 602         </div>
 603     </div>
 604 </div>