mason/solgs/population/combined/combined.mas

   1 <%doc>
   2
   3 =head1 NAME
   4
   5 /solgs/population/combined/combined.mas - displays a list of traits common to the combined trials
   6
   7 =AUTHOR
   8
   9 Isaak Y Tecle (iyt2@cornell.edu)
  10
  11 =cut
  12
  13 </%doc>
  14
  15
  16 <%args>
  17
  18 $combo_pops_id
  19 $show_data => 1;
  20 $training_pop_id => ''
  21 $training_pop_name
  22 $training_pop_desc
  23 $training_pop_traits_details
  24 $markers_no
  25 $traits_no
  26 $stocks_no
  27 $protocol_url => ''
  28 $owner => ''
  29 $genotyping_protocol_id
  30 $data_set_type => ''
  31 </%args>
  32
  33 <%perl>
  34         if (!$training_pop_id) {$training_pop_id = $combo_pops_id;}
  35 </%perl>
  36
  37 <& /util/import_javascript.mas, classes => ["solGS.solGS"] &>
  38 <& /util/import_css.mas, paths => ['/static/css/solgs/solgs.css'] &>
  39
  40 <br />
  41 <br />
  42
  43 <& /page/page_title.mas,
  44    title => "Select one or more traits from training population \"$training_pop_name\" to build a GS model and predict GEBVs for."
  45 &>
  46
  47 <&| /page/info_section.mas,
  48     collapsible => 1,
  49     collapsed   => 0,
  50     title       => "Training population summary",
  51   &>
  52
  53  <& /solgs/population/summary.mas,
  54     training_pop_id   => $training_pop_id,
  55     training_pop_name => $training_pop_name,
  56     training_pop_desc => $training_pop_desc,
  57     combo_pops_id => $combo_pops_id,
  58     markers_no   => $markers_no,
  59     traits_no    => $traits_no,
  60     stocks_no    => $stocks_no,
  61     protocol_url => $protocol_url,
  62     owner        => $owner,
  63  &>
  64
  65  <& /solgs/population/hidden_input.mas,
  66     training_pop_id  => $training_pop_id,
  67    combo_pops_id => $training_pop_id,
  68         training_pop_name => $training_pop_name,
  69         training_pop_desc => $training_pop_desc,
  70         genotyping_protocol_id => $genotyping_protocol_id,
  71     data_set_type => $data_set_type
  72    &>
  73
  74 </&>
  75
  76 % if ($show_data)
  77 %{
  78
  79
  80 <&| /page/info_section.mas,
  81       collapsible => 1,
  82       collapsed   => 0,
  83       title       => "Traits"
  84 &>
  85
  86 <& /solgs/population/traits_list.mas,
  87     training_pop_id => $training_pop_id,
  88     training_pop_traits_details => $training_pop_traits_details,
  89     data_set_type => $data_set_type,
  90     genotyping_protocol_id => $genotyping_protocol_id,
  91 &>
  92
  93 </&>
  94
  95 <& /solgs/tools/correlation/correlation.mas,
  96    corre_pop_id  => $training_pop_id,
  97    data_set_type => $data_set_type
  98 &>
  99
 100 <& /solgs/population/trait_acronyms.mas &>
 101
 102 %}
 103 % else
 104 %{
 105
 106 <&| /page/info_section.mas,
 107     collapsible => 1,
 108     collapsed   => 0,
 109     title       => "Data Accessibility",
 110   &>
 111
 112 <p>This is private data.</p>
 113
 114 </&>
 115 %}